Wall clock time and date at job start Wed Apr 1 2020 04:00:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.46720 * 2 1 4 4 N 1.46499 * 109.47032 * 120.00008 * 2 1 3 5 5 C 1.36940 * 119.99912 * 275.00587 * 4 2 1 6 6 H 1.07995 * 120.00121 * 359.97438 * 5 4 2 7 7 C 1.38808 * 119.99794 * 180.02562 * 5 4 2 8 8 N 1.31626 * 120.00297 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99811 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47209 * 89.99557 * 9 7 5 11 11 H 1.48507 * 109.46673 * 209.99339 * 9 7 5 12 12 H 1.48493 * 109.47132 * 329.99158 * 9 7 5 13 13 C 1.52994 * 109.47018 * 240.00147 * 2 1 3 14 14 C 1.53046 * 109.45972 * 180.02562 * 13 2 1 15 15 C 1.53186 * 109.31346 * 178.60074 * 14 13 2 16 16 N 1.46927 * 108.76735 * 54.65271 * 15 14 13 17 17 C 1.34774 * 120.63349 * 126.40749 * 16 15 14 18 18 O 1.21603 * 120.00462 * 175.05622 * 17 16 15 19 19 C 1.47408 * 119.99655 * 355.05028 * 17 16 15 20 20 N 1.31875 * 125.94155 * 6.24602 * 19 17 16 21 21 C 1.33366 * 109.16328 * 179.97438 * 20 19 17 22 22 C 1.34878 * 108.15586 * 359.97438 * 21 20 19 23 23 N 1.35680 * 107.36778 * 359.81549 * 22 21 20 24 24 C 1.46455 * 124.56610 * 179.43200 * 23 22 21 25 25 C 1.53282 * 108.82471 * 343.34463 * 24 23 22 26 26 C 1.53142 * 109.60223 * 50.28173 * 25 24 23 27 27 C 1.50757 * 128.32410 * 180.02562 * 22 21 20 28 28 C 1.46931 * 118.73764 * 306.38463 * 16 15 14 29 29 C 1.53040 * 109.46275 * 59.97285 * 13 2 1 30 30 H 1.09004 * 109.47267 * 60.00215 * 1 2 3 31 31 H 1.08999 * 109.47176 * 299.99943 * 1 2 3 32 32 H 1.08999 * 109.47621 * 179.97438 * 1 2 3 33 33 H 0.96998 * 119.99736 * 94.99933 * 4 2 1 34 34 H 0.96992 * 120.00015 * 180.02562 * 8 7 5 35 35 H 1.09001 * 109.45980 * 299.99676 * 13 2 1 36 36 H 1.08997 * 109.49117 * 298.56596 * 14 13 2 37 37 H 1.08997 * 109.49532 * 58.66042 * 14 13 2 38 38 H 1.09005 * 109.59782 * 294.86557 * 15 14 13 39 39 H 1.08998 * 109.70706 * 174.50476 * 15 14 13 40 40 H 1.07994 * 125.92345 * 180.02562 * 21 20 19 41 41 H 1.09005 * 109.74447 * 223.43094 * 24 23 22 42 42 H 1.08991 * 109.48504 * 103.10853 * 24 23 22 43 43 H 1.08997 * 109.45084 * 290.24152 * 25 24 23 44 44 H 1.08995 * 109.44783 * 170.31949 * 25 24 23 45 45 H 1.09005 * 109.50772 * 170.59467 * 26 25 24 46 46 H 1.09001 * 109.51362 * 50.45290 * 26 25 24 47 47 H 1.08998 * 109.73375 * 283.92139 * 27 22 21 48 48 H 1.09006 * 109.72868 * 44.60907 * 27 22 21 49 49 H 1.09001 * 109.58633 * 293.81424 * 28 16 15 50 50 H 1.09001 * 109.70330 * 173.46615 * 28 16 15 51 51 H 1.08998 * 109.50020 * 301.33380 * 29 13 2 52 52 H 1.09000 * 109.49526 * 61.40015 * 29 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1490 -0.0075 2.3758 6 1 1.8924 1.0404 2.4242 7 6 2.6121 -0.6617 3.5090 8 7 2.9253 -1.9388 3.4499 9 14 2.7910 0.2703 5.1180 10 1 1.5236 0.1792 5.8864 11 1 3.8960 -0.3229 5.9134 12 1 3.0959 1.6954 4.8332 13 6 2.0399 -0.7212 -1.2492 14 6 3.5704 -0.7216 -1.2487 15 6 4.0773 -1.4747 -2.4825 16 7 3.4747 -0.8769 -3.6818 17 6 4.2481 -0.4582 -4.7030 18 8 3.7347 -0.0483 -5.7263 19 6 5.7165 -0.4969 -4.5794 20 7 6.3954 -1.0217 -3.5781 21 6 7.7006 -0.8738 -3.8089 22 6 7.8493 -0.2383 -4.9893 23 7 6.6071 -0.0022 -5.4814 24 6 6.3308 0.6827 -6.7461 25 6 7.5923 1.4327 -7.1884 26 6 8.7948 0.4854 -7.1457 27 6 9.1277 0.1570 -5.6837 28 6 2.0128 -0.7447 -3.7469 29 6 1.5291 0.0000 -2.4986 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 2.2490 -1.6318 1.1526 34 1 3.2486 -2.3960 4.2419 35 1 1.6765 -1.7488 -1.2490 36 1 3.9344 0.3055 -1.2741 37 1 3.9337 -1.2147 -0.3470 38 1 3.7904 -2.5241 -2.4138 39 1 5.1628 -1.3958 -2.5410 40 1 8.4999 -1.2060 -3.1632 41 1 5.5132 1.3908 -6.6105 42 1 6.0569 -0.0507 -7.5044 43 1 7.7686 2.2735 -6.5175 44 1 7.4572 1.8021 -8.2049 45 1 9.6533 0.9656 -7.6153 46 1 8.5535 -0.4336 -7.6799 47 1 9.5547 1.0340 -5.1972 48 1 9.8381 -0.6688 -5.6447 49 1 1.5576 -1.7345 -3.7813 50 1 1.7339 -0.1831 -4.6385 51 1 0.4394 0.0207 -2.4869 52 1 1.9122 1.0204 -2.5118 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267494239.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:29 Heat of formation + Delta-G solvation = 37.444779 kcal Electronic energy + Delta-G solvation = -31364.728592 eV Core-core repulsion = 27365.224202 eV Total energy + Delta-G solvation = -3999.504390 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.79411 -39.87486 -37.80286 -37.13055 -35.34887 -33.25907 -32.88157 -31.47814 -30.61385 -30.54463 -28.65487 -27.94491 -25.47017 -24.88990 -23.97942 -22.95661 -22.55192 -22.16062 -20.96737 -19.84291 -19.39186 -19.04439 -17.36624 -17.01701 -16.55428 -16.42513 -15.53662 -15.23513 -14.87015 -14.67711 -14.53374 -14.35609 -14.12514 -14.02676 -13.83230 -13.73735 -13.62999 -13.46997 -13.10220 -12.61451 -12.48650 -12.36637 -12.25447 -11.93275 -11.60354 -11.57189 -11.50581 -11.44168 -11.01854 -10.92674 -10.82130 -10.64783 -10.43387 -10.25397 -10.17736 -10.06457 -9.91492 -9.78651 -9.50105 -9.11356 -8.81320 -8.71071 -8.38102 -6.86387 -5.69403 -2.96795 1.22237 2.19431 2.43069 3.14227 3.32098 3.47525 3.52880 3.54253 4.01741 4.14218 4.17022 4.24143 4.37238 4.64628 4.80417 4.84570 4.93190 5.01629 5.12371 5.17881 5.20446 5.26909 5.28216 5.33687 5.42057 5.46948 5.48013 5.60070 5.62462 5.65702 5.73511 5.85455 5.92899 6.01427 6.08767 6.13952 6.17982 6.25548 6.31528 6.45252 6.48811 6.56172 6.64245 6.68394 6.79718 6.93308 7.00544 7.10057 7.22497 7.37134 7.65883 7.77110 8.09224 8.49742 9.60721 10.20052 10.55042 11.53407 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014291 B = 0.002593 C = 0.002307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1958.749480 B =10794.261528 C =12133.624884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.178 3.822 3 H 0.043 0.957 4 N -0.722 5.722 5 C -0.232 4.232 6 H 0.068 0.932 7 C -0.015 4.015 8 N -0.933 5.933 9 Si 0.903 3.097 10 H -0.292 1.292 11 H -0.292 1.292 12 H -0.283 1.283 13 C -0.092 4.092 14 C -0.115 4.115 15 C 0.052 3.948 16 N -0.577 5.577 17 C 0.603 3.397 18 O -0.556 6.556 19 C 0.154 3.846 20 N -0.436 5.436 21 C -0.021 4.021 22 C -0.003 4.003 23 N -0.409 5.409 24 C 0.104 3.896 25 C -0.137 4.137 26 C -0.127 4.127 27 C -0.048 4.048 28 C 0.113 3.887 29 C -0.127 4.127 30 H 0.037 0.963 31 H 0.050 0.950 32 H 0.045 0.955 33 H 0.383 0.617 34 H 0.254 0.746 35 H 0.067 0.933 36 H 0.057 0.943 37 H 0.090 0.910 38 H 0.061 0.939 39 H 0.159 0.841 40 H 0.179 0.821 41 H 0.103 0.897 42 H 0.090 0.910 43 H 0.075 0.925 44 H 0.090 0.910 45 H 0.079 0.921 46 H 0.069 0.931 47 H 0.087 0.913 48 H 0.092 0.908 49 H 0.069 0.931 50 H 0.087 0.913 51 H 0.078 0.922 52 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.800 3.956 -24.625 27.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.068 3.932 3 H 0.061 0.939 4 N -0.363 5.363 5 C -0.364 4.364 6 H 0.086 0.914 7 C -0.211 4.211 8 N -0.582 5.582 9 Si 0.735 3.265 10 H -0.219 1.219 11 H -0.219 1.219 12 H -0.209 1.209 13 C -0.112 4.112 14 C -0.154 4.154 15 C -0.070 4.070 16 N -0.307 5.307 17 C 0.389 3.611 18 O -0.434 6.434 19 C -0.105 4.105 20 N -0.158 5.158 21 C -0.173 4.173 22 C -0.122 4.122 23 N -0.090 5.090 24 C -0.017 4.017 25 C -0.174 4.174 26 C -0.165 4.165 27 C -0.086 4.086 28 C -0.009 4.009 29 C -0.165 4.165 30 H 0.056 0.944 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.217 0.783 34 H 0.064 0.936 35 H 0.085 0.915 36 H 0.075 0.925 37 H 0.109 0.891 38 H 0.080 0.920 39 H 0.175 0.825 40 H 0.196 0.804 41 H 0.121 0.879 42 H 0.108 0.892 43 H 0.094 0.906 44 H 0.108 0.892 45 H 0.098 0.902 46 H 0.088 0.912 47 H 0.105 0.895 48 H 0.110 0.890 49 H 0.087 0.913 50 H 0.106 0.894 51 H 0.097 0.903 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 10.062 3.998 -24.496 26.782 hybrid contribution 0.309 0.449 0.525 0.756 sum 10.371 4.446 -23.972 26.495 Atomic orbital electron populations 1.22498 0.99677 1.00696 0.99730 1.20211 0.91453 0.95296 0.86227 0.93869 1.42405 1.78037 1.10641 1.05230 1.19219 1.35969 0.93756 0.87406 0.91429 1.24698 1.02490 0.95972 0.97901 1.69655 1.51262 1.08609 1.28702 0.86241 0.77211 0.78815 0.84255 1.21916 1.21863 1.20897 1.21425 0.95719 0.99704 0.94313 1.21810 0.95092 1.00790 0.97663 1.23340 1.04973 0.96037 0.82619 1.47854 1.06791 1.58487 1.17589 1.16522 0.82749 0.78256 0.83612 1.90765 1.74006 1.49621 1.29048 1.22509 0.92698 1.06100 0.89145 1.69861 1.04457 1.19563 1.21870 1.22182 0.93994 1.04679 0.96402 1.21310 0.86891 1.06200 0.97797 1.44934 1.05677 1.41087 1.17338 1.22139 0.99428 0.97312 0.82864 1.21959 0.93598 0.98763 1.03111 1.21693 0.98337 1.00008 0.96446 1.20315 0.91639 1.02494 0.94143 1.21720 0.78445 1.01083 0.99614 1.22012 1.01043 0.99554 0.93911 0.94379 0.93113 0.93616 0.78301 0.93640 0.91489 0.92468 0.89125 0.92023 0.82549 0.80379 0.87923 0.89181 0.90594 0.89177 0.90236 0.91212 0.89487 0.88966 0.91258 0.89420 0.90335 0.91785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.03 9.14 37.16 0.34 -2.70 16 2 C 0.18 3.55 2.47 -67.93 -0.17 3.38 16 3 H 0.04 0.91 8.08 -51.93 -0.42 0.49 16 4 N -0.72 -17.92 4.41 -53.43 -0.24 -18.16 16 5 C -0.23 -6.45 9.93 -15.06 -0.15 -6.60 16 6 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 7 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 8 N -0.93 -28.22 13.06 55.49 0.72 -27.49 16 9 Si 0.90 22.65 29.55 -169.99 -5.02 17.63 16 10 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 11 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 12 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 13 C -0.09 -1.53 1.79 -90.58 -0.16 -1.70 16 14 C -0.12 -1.99 5.22 -26.61 -0.14 -2.12 16 15 C 0.05 0.79 6.32 -3.71 -0.02 0.77 16 16 N -0.58 -8.57 2.97 -174.04 -0.52 -9.09 16 17 C 0.60 9.27 7.68 -12.53 -0.10 9.18 16 18 O -0.56 -9.07 14.79 5.27 0.08 -9.00 16 19 C 0.15 2.20 7.60 -154.86 -1.18 1.02 16 20 N -0.44 -6.20 7.54 -11.45 -0.09 -6.29 16 21 C -0.02 -0.24 11.82 -18.08 -0.21 -0.45 16 22 C 0.00 -0.03 6.57 -82.06 -0.54 -0.57 16 23 N -0.41 -4.70 3.14 -110.06 -0.35 -5.04 16 24 C 0.10 0.91 6.04 -3.92 -0.02 0.89 16 25 C -0.14 -0.76 5.93 -26.51 -0.16 -0.92 16 26 C -0.13 -0.61 5.97 -26.40 -0.16 -0.77 16 27 C -0.05 -0.28 6.31 -27.60 -0.17 -0.45 16 28 C 0.11 1.52 6.41 -3.71 -0.02 1.50 16 29 C -0.13 -1.77 5.04 -26.61 -0.13 -1.91 16 30 H 0.04 0.58 6.40 -51.93 -0.33 0.25 16 31 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.38 10.11 7.58 -40.82 -0.31 9.80 16 34 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 35 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 37 H 0.09 1.80 7.41 -51.93 -0.38 1.42 16 38 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.16 2.47 3.65 -81.62 -0.30 2.17 16 40 H 0.18 1.55 8.06 -52.49 -0.42 1.13 16 41 H 0.10 1.01 7.43 -51.93 -0.39 0.62 16 42 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.08 0.45 8.12 -51.93 -0.42 0.03 16 44 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 46 H 0.07 0.37 8.12 -51.93 -0.42 -0.06 16 47 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 49 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 50 H 0.09 1.17 7.04 -51.93 -0.37 0.80 16 51 H 0.08 1.00 6.36 -51.93 -0.33 0.67 16 52 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 398.60 15.07 6.01 6.01 Total: -1.00 -32.89 398.60 -11.20 -44.10 By element: Atomic # 1 Polarization: 18.01 SS G_CDS: -8.71 Total: 9.30 kcal Atomic # 6 Polarization: 1.13 SS G_CDS: -3.09 Total: -1.97 kcal Atomic # 7 Polarization: -65.61 SS G_CDS: -0.46 Total: -66.07 kcal Atomic # 8 Polarization: -9.07 SS G_CDS: 0.08 Total: -9.00 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.63 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -32.89 -11.20 -44.10 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267494239.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.540 kcal (2) G-P(sol) polarization free energy of solvation -32.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.096 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds