Wall clock time and date at job start Wed Apr 1 2020 04:00:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.46647 * 2 1 4 4 N 1.46494 * 109.47203 * 240.00080 * 2 1 3 5 5 C 1.36938 * 120.00195 * 84.71969 * 4 2 1 6 6 H 1.07995 * 119.99919 * 0.27752 * 5 4 2 7 7 C 1.38817 * 119.99702 * 180.27211 * 5 4 2 8 8 N 1.31620 * 120.00161 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99565 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.46903 * 90.00592 * 9 7 5 11 11 H 1.48495 * 109.47076 * 210.00141 * 9 7 5 12 12 H 1.48496 * 109.47139 * 330.00632 * 9 7 5 13 13 C 1.52998 * 109.46985 * 119.99540 * 2 1 3 14 14 C 1.53039 * 109.45855 * 60.07229 * 13 2 1 15 15 C 1.53197 * 109.31124 * 178.61374 * 14 13 2 16 16 N 1.46924 * 108.77731 * 54.63251 * 15 14 13 17 17 C 1.34779 * 120.62911 * 126.41171 * 16 15 14 18 18 O 1.21605 * 119.99635 * 173.89245 * 17 16 15 19 19 C 1.47412 * 119.99915 * 353.89572 * 17 16 15 20 20 N 1.31871 * 125.93753 * 354.08754 * 19 17 16 21 21 C 1.33369 * 109.15554 * 179.97438 * 20 19 17 22 22 C 1.34868 * 108.15837 * 359.97438 * 21 20 19 23 23 N 1.35676 * 107.37373 * 359.80948 * 22 21 20 24 24 C 1.46446 * 124.57586 * 179.43570 * 23 22 21 25 25 C 1.53282 * 108.82415 * 343.35189 * 24 23 22 26 26 C 1.53152 * 109.60738 * 50.27502 * 25 24 23 27 27 C 1.50762 * 128.32653 * 180.02562 * 22 21 20 28 28 C 1.46922 * 118.73779 * 306.39150 * 16 15 14 29 29 C 1.53036 * 109.46130 * 300.00371 * 13 2 1 30 30 H 1.08999 * 109.47065 * 60.00417 * 1 2 3 31 31 H 1.09002 * 109.47085 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47261 * 300.00031 * 1 2 3 33 33 H 0.97002 * 119.99694 * 264.99787 * 4 2 1 34 34 H 0.96998 * 119.99481 * 179.97438 * 8 7 5 35 35 H 1.08998 * 109.45842 * 180.02562 * 13 2 1 36 36 H 1.09006 * 109.49872 * 298.56071 * 14 13 2 37 37 H 1.09001 * 109.50206 * 58.66157 * 14 13 2 38 38 H 1.09001 * 109.58684 * 294.84427 * 15 14 13 39 39 H 1.08998 * 109.58525 * 174.42523 * 15 14 13 40 40 H 1.07999 * 125.91934 * 180.02562 * 21 20 19 41 41 H 1.09000 * 109.75236 * 223.43747 * 24 23 22 42 42 H 1.09003 * 109.48515 * 103.10867 * 24 23 22 43 43 H 1.09004 * 109.44849 * 290.24415 * 25 24 23 44 44 H 1.08995 * 109.45346 * 170.31806 * 25 24 23 45 45 H 1.08997 * 109.51069 * 170.59365 * 26 25 24 46 46 H 1.09000 * 109.50310 * 50.45789 * 26 25 24 47 47 H 1.09002 * 109.73148 * 283.91597 * 27 22 21 48 48 H 1.09003 * 109.72932 * 44.59677 * 27 22 21 49 49 H 1.08996 * 109.59029 * 293.81949 * 28 16 15 50 50 H 1.09006 * 109.70165 * 173.46042 * 28 16 15 51 51 H 1.09003 * 109.50141 * 301.33487 * 29 13 2 52 52 H 1.09001 * 109.49981 * 61.40242 * 29 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1438 -0.0089 -2.3771 6 1 1.8869 1.0390 -2.4257 7 6 2.6011 -0.6647 -3.5119 8 7 2.9138 -1.9419 -3.4528 9 14 2.7728 0.2654 -5.1227 10 1 4.1350 0.8496 -5.2142 11 1 2.5569 -0.6670 -6.2581 12 1 1.7631 1.3530 -5.1764 13 6 2.0400 -0.7211 1.2493 14 6 1.5312 -2.1645 1.2482 15 6 2.0721 -2.8933 2.4824 16 7 1.7086 -2.1262 3.6816 17 6 1.0559 -2.7163 4.7026 18 8 0.8588 -2.1027 5.7338 19 6 0.5812 -4.1055 4.5691 20 7 0.6326 -4.8392 3.4745 21 6 0.1134 -6.0411 3.7286 22 6 -0.2759 -6.0665 5.0196 23 7 0.0190 -4.8554 5.5555 24 6 -0.2578 -4.4701 6.9410 25 6 -1.2731 -5.4533 7.5344 26 6 -0.8067 -6.8897 7.2799 27 6 -0.9178 -7.1987 5.7804 28 6 2.0706 -0.7038 3.7470 29 6 1.5297 0.0005 2.4986 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 2.2491 -1.6317 -1.1525 34 1 3.2331 -2.4002 -4.2458 35 1 3.1300 -0.7206 1.2493 36 1 0.4414 -2.1661 1.2733 37 1 1.8756 -2.6710 0.3466 38 1 3.1571 -2.9721 2.4140 39 1 1.6342 -3.8898 2.5394 40 1 0.0216 -6.8536 3.0230 41 1 -0.6682 -3.4607 6.9676 42 1 0.6655 -4.5047 7.5194 43 1 -2.2448 -5.2989 7.0653 44 1 -1.3576 -5.2841 8.6078 45 1 -1.4347 -7.5813 7.8414 46 1 0.2300 -6.9976 7.5986 47 1 -1.9674 -7.2831 5.4985 48 1 -0.4002 -8.1318 5.5578 49 1 3.1554 -0.6039 3.7817 50 1 1.6335 -0.2539 4.6385 51 1 1.8730 1.0350 2.4871 52 1 0.4400 -0.0210 2.5116 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267494240.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:34 Heat of formation + Delta-G solvation = 39.586871 kcal Electronic energy + Delta-G solvation = -31424.467896 eV Core-core repulsion = 27425.056394 eV Total energy + Delta-G solvation = -3999.411502 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.80882 -39.91949 -37.90811 -37.14366 -35.34382 -33.27011 -32.89190 -31.53677 -30.58356 -30.39703 -28.61241 -27.91969 -25.50623 -24.86926 -23.98291 -22.95893 -22.94659 -22.17101 -21.28054 -19.95597 -19.25710 -18.44065 -17.29605 -17.16727 -16.52129 -16.44936 -15.58654 -15.15704 -14.81844 -14.72460 -14.54395 -14.40154 -14.28252 -14.06238 -13.96901 -13.80095 -13.64416 -13.47328 -12.96928 -12.84125 -12.53692 -12.37954 -12.08075 -11.84897 -11.63707 -11.59483 -11.50700 -11.45033 -11.24216 -10.95959 -10.79946 -10.49793 -10.33051 -10.23999 -10.22262 -10.01335 -9.94328 -9.82958 -9.46218 -9.09032 -8.83062 -8.72812 -8.40012 -6.86309 -5.69153 -2.96492 1.20102 2.18841 2.40720 3.12857 3.30074 3.47763 3.52972 3.54505 4.00485 4.13242 4.15054 4.23097 4.35966 4.65004 4.78735 4.82399 4.92359 5.00714 5.11959 5.17248 5.19506 5.26080 5.27951 5.33061 5.41099 5.45745 5.46999 5.58788 5.64155 5.65557 5.70476 5.82868 5.93283 5.93911 6.08507 6.12638 6.17812 6.30729 6.34388 6.36042 6.43237 6.55291 6.65715 6.67789 6.81813 6.89026 6.98862 7.07073 7.26803 7.35607 7.63939 7.77444 8.07281 8.50548 9.61299 10.21362 10.56016 11.53812 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.019330 B = 0.002386 C = 0.002204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.190074 B =11732.006398 C =12698.592673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.178 3.822 3 H 0.044 0.956 4 N -0.724 5.724 5 C -0.234 4.234 6 H 0.068 0.932 7 C -0.016 4.016 8 N -0.934 5.934 9 Si 0.904 3.096 10 H -0.291 1.291 11 H -0.292 1.292 12 H -0.283 1.283 13 C -0.093 4.093 14 C -0.119 4.119 15 C 0.055 3.945 16 N -0.577 5.577 17 C 0.604 3.396 18 O -0.555 6.555 19 C 0.153 3.847 20 N -0.435 5.435 21 C -0.021 4.021 22 C -0.003 4.003 23 N -0.409 5.409 24 C 0.102 3.898 25 C -0.136 4.136 26 C -0.127 4.127 27 C -0.048 4.048 28 C 0.114 3.886 29 C -0.127 4.127 30 H 0.048 0.952 31 H 0.048 0.952 32 H 0.036 0.964 33 H 0.384 0.616 34 H 0.254 0.746 35 H 0.070 0.930 36 H 0.065 0.935 37 H 0.083 0.917 38 H 0.060 0.940 39 H 0.156 0.844 40 H 0.179 0.821 41 H 0.106 0.894 42 H 0.088 0.912 43 H 0.075 0.925 44 H 0.090 0.910 45 H 0.079 0.921 46 H 0.069 0.931 47 H 0.087 0.913 48 H 0.092 0.908 49 H 0.069 0.931 50 H 0.088 0.912 51 H 0.074 0.926 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.697 -10.323 25.199 28.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.069 3.931 3 H 0.062 0.938 4 N -0.366 5.366 5 C -0.365 4.365 6 H 0.086 0.914 7 C -0.212 4.212 8 N -0.583 5.583 9 Si 0.736 3.264 10 H -0.219 1.219 11 H -0.219 1.219 12 H -0.209 1.209 13 C -0.112 4.112 14 C -0.157 4.157 15 C -0.067 4.067 16 N -0.307 5.307 17 C 0.390 3.610 18 O -0.434 6.434 19 C -0.106 4.106 20 N -0.156 5.156 21 C -0.173 4.173 22 C -0.122 4.122 23 N -0.090 5.090 24 C -0.020 4.020 25 C -0.174 4.174 26 C -0.165 4.165 27 C -0.086 4.086 28 C -0.008 4.008 29 C -0.166 4.166 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.055 0.945 33 H 0.219 0.781 34 H 0.064 0.936 35 H 0.088 0.912 36 H 0.083 0.917 37 H 0.102 0.898 38 H 0.078 0.922 39 H 0.172 0.828 40 H 0.196 0.804 41 H 0.124 0.876 42 H 0.107 0.893 43 H 0.094 0.906 44 H 0.108 0.892 45 H 0.098 0.902 46 H 0.088 0.912 47 H 0.105 0.895 48 H 0.110 0.890 49 H 0.087 0.913 50 H 0.106 0.894 51 H 0.093 0.907 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -7.451 -9.467 25.018 27.768 hybrid contribution -0.073 0.005 -0.459 0.464 sum -7.525 -9.461 24.560 27.374 Atomic orbital electron populations 1.22530 0.99686 1.00888 0.99540 1.20180 0.91666 0.95044 0.86244 0.93832 1.42499 1.78085 1.10847 1.05194 1.19250 1.36106 0.93794 0.87346 0.91364 1.24712 1.02551 0.95968 0.97920 1.69657 1.51369 1.08548 1.28686 0.86226 0.77689 0.78572 0.83941 1.21866 1.21880 1.20906 1.21433 1.00260 0.95192 0.94331 1.21865 1.01026 0.95410 0.97388 1.23233 1.00490 1.00137 0.82810 1.47816 1.54302 1.10944 1.17660 1.16521 0.78224 0.82640 0.83662 1.90761 1.59371 1.64709 1.28517 1.22511 1.07466 0.95712 0.84913 1.69907 1.18680 1.03792 1.23266 1.22180 1.04335 0.96657 0.94116 1.21313 1.06936 0.88429 0.95514 1.44945 1.42603 1.10710 1.10772 1.22173 1.00740 1.00870 0.78192 1.21955 0.98797 0.94483 1.02148 1.21696 1.02491 0.96344 0.95976 1.20316 1.00752 0.94316 0.93208 1.21719 1.00067 0.79418 0.99636 1.22011 1.01468 0.99202 0.93881 0.93272 0.93251 0.94548 0.78097 0.93629 0.91201 0.91666 0.89810 0.92165 0.82796 0.80374 0.87566 0.89349 0.90602 0.89188 0.90237 0.91213 0.89509 0.88956 0.91256 0.89406 0.90741 0.91265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.14 8.78 37.16 0.33 -2.81 16 2 C 0.18 3.59 2.72 -67.93 -0.18 3.40 16 3 H 0.04 0.90 8.08 -51.93 -0.42 0.48 16 4 N -0.72 -18.19 5.04 -53.43 -0.27 -18.46 16 5 C -0.23 -6.55 9.93 -15.06 -0.15 -6.70 16 6 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 7 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 8 N -0.93 -28.40 13.06 55.49 0.72 -27.68 16 9 Si 0.90 22.72 29.55 -169.99 -5.02 17.70 16 10 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 11 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 12 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 13 C -0.09 -1.55 2.14 -90.58 -0.19 -1.75 16 14 C -0.12 -1.98 4.81 -26.61 -0.13 -2.11 16 15 C 0.05 0.82 6.32 -3.71 -0.02 0.80 16 16 N -0.58 -8.44 2.97 -174.04 -0.52 -8.95 16 17 C 0.60 9.14 7.68 -12.52 -0.10 9.04 16 18 O -0.55 -8.95 14.65 5.27 0.08 -8.87 16 19 C 0.15 2.14 7.58 -154.86 -1.17 0.96 16 20 N -0.44 -6.06 7.59 -11.45 -0.09 -6.15 16 21 C -0.02 -0.24 11.82 -18.08 -0.21 -0.45 16 22 C 0.00 -0.03 6.57 -82.06 -0.54 -0.56 16 23 N -0.41 -4.58 3.14 -110.07 -0.35 -4.93 16 24 C 0.10 0.87 6.16 -3.93 -0.02 0.85 16 25 C -0.14 -0.73 5.93 -26.51 -0.16 -0.88 16 26 C -0.13 -0.59 5.97 -26.40 -0.16 -0.75 16 27 C -0.05 -0.27 6.31 -27.60 -0.17 -0.44 16 28 C 0.11 1.52 6.41 -3.71 -0.02 1.50 16 29 C -0.13 -1.78 4.97 -26.61 -0.13 -1.91 16 30 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 31 H 0.05 0.95 6.46 -51.93 -0.34 0.61 16 32 H 0.04 0.59 6.46 -51.93 -0.34 0.25 16 33 H 0.38 10.15 6.04 -40.82 -0.25 9.91 16 34 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 35 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.06 1.13 6.51 -51.93 -0.34 0.79 16 37 H 0.08 1.58 6.46 -51.93 -0.34 1.24 16 38 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 39 H 0.16 2.36 3.70 -78.49 -0.29 2.07 16 40 H 0.18 1.51 8.06 -52.49 -0.42 1.09 16 41 H 0.11 1.03 7.17 -51.93 -0.37 0.66 16 42 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 43 H 0.08 0.43 8.12 -51.93 -0.42 0.01 16 44 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.08 0.24 8.14 -51.93 -0.42 -0.19 16 46 H 0.07 0.35 8.12 -51.93 -0.42 -0.07 16 47 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 48 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 49 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 50 H 0.09 1.16 7.05 -51.93 -0.37 0.80 16 51 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 52 H 0.07 1.01 6.51 -51.93 -0.34 0.67 16 LS Contribution 393.22 15.07 5.93 5.93 Total: -1.00 -33.27 393.22 -11.07 -44.35 By element: Atomic # 1 Polarization: 17.86 SS G_CDS: -8.42 Total: 9.45 kcal Atomic # 6 Polarization: 0.77 SS G_CDS: -3.14 Total: -2.37 kcal Atomic # 7 Polarization: -65.68 SS G_CDS: -0.49 Total: -66.18 kcal Atomic # 8 Polarization: -8.95 SS G_CDS: 0.08 Total: -8.87 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -5.02 Total: 17.70 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -33.27 -11.07 -44.35 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267494240.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.935 kcal (2) G-P(sol) polarization free energy of solvation -33.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds