Wall clock time and date at job start Wed Apr 1 2020 04:00:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.46647 * 2 1 4 4 N 1.46494 * 109.47203 * 240.00080 * 2 1 3 5 5 C 1.36938 * 120.00195 * 84.71969 * 4 2 1 6 6 H 1.07995 * 119.99919 * 0.27752 * 5 4 2 7 7 C 1.38817 * 119.99702 * 180.27211 * 5 4 2 8 8 N 1.31620 * 120.00161 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99565 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.46903 * 90.00592 * 9 7 5 11 11 H 1.48495 * 109.47076 * 210.00141 * 9 7 5 12 12 H 1.48496 * 109.47139 * 330.00632 * 9 7 5 13 13 C 1.52998 * 109.46985 * 119.99540 * 2 1 3 14 14 C 1.53039 * 109.45855 * 60.07229 * 13 2 1 15 15 C 1.53197 * 109.31124 * 178.61374 * 14 13 2 16 16 N 1.46924 * 108.77731 * 54.63251 * 15 14 13 17 17 C 1.34779 * 120.62911 * 126.41171 * 16 15 14 18 18 O 1.21605 * 119.99635 * 173.89245 * 17 16 15 19 19 C 1.47412 * 119.99915 * 353.89572 * 17 16 15 20 20 N 1.31871 * 125.93753 * 354.08754 * 19 17 16 21 21 C 1.33369 * 109.15554 * 179.97438 * 20 19 17 22 22 C 1.34868 * 108.15837 * 359.97438 * 21 20 19 23 23 N 1.35676 * 107.37373 * 359.80948 * 22 21 20 24 24 C 1.46446 * 124.57586 * 179.43570 * 23 22 21 25 25 C 1.53282 * 108.82415 * 343.35189 * 24 23 22 26 26 C 1.53152 * 109.60738 * 50.27502 * 25 24 23 27 27 C 1.50762 * 128.32653 * 180.02562 * 22 21 20 28 28 C 1.46922 * 118.73779 * 306.39150 * 16 15 14 29 29 C 1.53036 * 109.46130 * 300.00371 * 13 2 1 30 30 H 1.08999 * 109.47065 * 60.00417 * 1 2 3 31 31 H 1.09002 * 109.47085 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47261 * 300.00031 * 1 2 3 33 33 H 0.97002 * 119.99694 * 264.99787 * 4 2 1 34 34 H 0.96998 * 119.99481 * 179.97438 * 8 7 5 35 35 H 1.08998 * 109.45842 * 180.02562 * 13 2 1 36 36 H 1.09006 * 109.49872 * 298.56071 * 14 13 2 37 37 H 1.09001 * 109.50206 * 58.66157 * 14 13 2 38 38 H 1.09001 * 109.58684 * 294.84427 * 15 14 13 39 39 H 1.08998 * 109.58525 * 174.42523 * 15 14 13 40 40 H 1.07999 * 125.91934 * 180.02562 * 21 20 19 41 41 H 1.09000 * 109.75236 * 223.43747 * 24 23 22 42 42 H 1.09003 * 109.48515 * 103.10867 * 24 23 22 43 43 H 1.09004 * 109.44849 * 290.24415 * 25 24 23 44 44 H 1.08995 * 109.45346 * 170.31806 * 25 24 23 45 45 H 1.08997 * 109.51069 * 170.59365 * 26 25 24 46 46 H 1.09000 * 109.50310 * 50.45789 * 26 25 24 47 47 H 1.09002 * 109.73148 * 283.91597 * 27 22 21 48 48 H 1.09003 * 109.72932 * 44.59677 * 27 22 21 49 49 H 1.08996 * 109.59029 * 293.81949 * 28 16 15 50 50 H 1.09006 * 109.70165 * 173.46042 * 28 16 15 51 51 H 1.09003 * 109.50141 * 301.33487 * 29 13 2 52 52 H 1.09001 * 109.49981 * 61.40242 * 29 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1438 -0.0089 -2.3771 6 1 1.8869 1.0390 -2.4257 7 6 2.6011 -0.6647 -3.5119 8 7 2.9138 -1.9419 -3.4528 9 14 2.7728 0.2654 -5.1227 10 1 4.1350 0.8496 -5.2142 11 1 2.5569 -0.6670 -6.2581 12 1 1.7631 1.3530 -5.1764 13 6 2.0400 -0.7211 1.2493 14 6 1.5312 -2.1645 1.2482 15 6 2.0721 -2.8933 2.4824 16 7 1.7086 -2.1262 3.6816 17 6 1.0559 -2.7163 4.7026 18 8 0.8588 -2.1027 5.7338 19 6 0.5812 -4.1055 4.5691 20 7 0.6326 -4.8392 3.4745 21 6 0.1134 -6.0411 3.7286 22 6 -0.2759 -6.0665 5.0196 23 7 0.0190 -4.8554 5.5555 24 6 -0.2578 -4.4701 6.9410 25 6 -1.2731 -5.4533 7.5344 26 6 -0.8067 -6.8897 7.2799 27 6 -0.9178 -7.1987 5.7804 28 6 2.0706 -0.7038 3.7470 29 6 1.5297 0.0005 2.4986 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 2.2491 -1.6317 -1.1525 34 1 3.2331 -2.4002 -4.2458 35 1 3.1300 -0.7206 1.2493 36 1 0.4414 -2.1661 1.2733 37 1 1.8756 -2.6710 0.3466 38 1 3.1571 -2.9721 2.4140 39 1 1.6342 -3.8898 2.5394 40 1 0.0216 -6.8536 3.0230 41 1 -0.6682 -3.4607 6.9676 42 1 0.6655 -4.5047 7.5194 43 1 -2.2448 -5.2989 7.0653 44 1 -1.3576 -5.2841 8.6078 45 1 -1.4347 -7.5813 7.8414 46 1 0.2300 -6.9976 7.5986 47 1 -1.9674 -7.2831 5.4985 48 1 -0.4002 -8.1318 5.5578 49 1 3.1554 -0.6039 3.7817 50 1 1.6335 -0.2539 4.6385 51 1 1.8730 1.0350 2.4871 52 1 0.4400 -0.0210 2.5116 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267494240.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:32 Heat of formation + Delta-G solvation = 20.864081 kcal Electronic energy + Delta-G solvation = -31425.279777 eV Core-core repulsion = 27425.056394 eV Total energy + Delta-G solvation = -4000.223383 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -43.65915 -41.09882 -39.26396 -37.78840 -36.84412 -34.68884 -33.92873 -32.79994 -31.98396 -31.46053 -30.02924 -29.07482 -26.81119 -25.92737 -25.33750 -24.23225 -24.13073 -22.90169 -22.52588 -21.09102 -20.03097 -19.74181 -19.21055 -18.30855 -17.65290 -17.28054 -16.75557 -16.51489 -16.15143 -15.88436 -15.47791 -15.42280 -15.22451 -15.12625 -15.03839 -14.83352 -14.77058 -14.64367 -14.23246 -14.19155 -13.93160 -13.66897 -13.11776 -13.03565 -12.97171 -12.89323 -12.75436 -12.66283 -12.16627 -12.09118 -12.02367 -11.92873 -11.90023 -11.76538 -11.60017 -11.43458 -11.33620 -11.15314 -10.89081 -10.78633 -10.24291 -9.82231 -9.34882 -8.94989 -7.89732 -5.16767 0.24187 1.32141 1.47699 1.49194 1.51546 1.57378 2.13787 2.26270 2.58823 3.10046 3.43063 3.48860 3.55605 3.75274 3.78961 3.83887 3.87434 3.97813 4.06827 4.18994 4.24209 4.27930 4.34905 4.39439 4.46272 4.51439 4.55424 4.63322 4.65949 4.74089 4.82715 4.86180 4.86570 4.94985 4.96154 5.00240 5.05319 5.06209 5.10897 5.12707 5.25906 5.27936 5.34690 5.37252 5.43688 5.51495 5.58100 5.71610 5.81925 5.99095 6.20710 6.33386 6.66009 6.99502 7.39174 8.18120 8.41220 9.33970 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.019330 B = 0.002386 C = 0.002204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.190074 B =11732.006398 C =12698.592673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.173 3.827 3 H 0.042 0.958 4 N -0.736 5.736 5 C -0.235 4.235 6 H 0.072 0.928 7 C -0.078 4.078 8 N -0.969 5.969 9 Si 0.969 3.031 10 H -0.288 1.288 11 H -0.297 1.297 12 H -0.272 1.272 13 C -0.083 4.083 14 C -0.108 4.108 15 C 0.064 3.936 16 N -0.580 5.580 17 C 0.601 3.399 18 O -0.571 6.571 19 C 0.113 3.887 20 N -0.457 5.457 21 C -0.044 4.044 22 C 0.016 3.984 23 N -0.408 5.408 24 C 0.095 3.905 25 C -0.129 4.129 26 C -0.124 4.124 27 C -0.048 4.048 28 C 0.114 3.886 29 C -0.117 4.117 30 H 0.031 0.969 31 H 0.040 0.960 32 H 0.067 0.933 33 H 0.374 0.626 34 H 0.249 0.751 35 H 0.062 0.938 36 H 0.057 0.943 37 H 0.056 0.944 38 H 0.061 0.939 39 H 0.157 0.843 40 H 0.200 0.800 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.074 0.926 44 H 0.112 0.888 45 H 0.106 0.894 46 H 0.066 0.934 47 H 0.103 0.897 48 H 0.112 0.888 49 H 0.081 0.919 50 H 0.093 0.907 51 H 0.094 0.906 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.777 -10.828 27.137 30.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.065 3.935 3 H 0.060 0.940 4 N -0.377 5.377 5 C -0.367 4.367 6 H 0.090 0.910 7 C -0.270 4.270 8 N -0.621 5.621 9 Si 0.799 3.201 10 H -0.215 1.215 11 H -0.224 1.224 12 H -0.197 1.197 13 C -0.102 4.102 14 C -0.146 4.146 15 C -0.058 4.058 16 N -0.310 5.310 17 C 0.388 3.612 18 O -0.451 6.451 19 C -0.144 4.144 20 N -0.179 5.179 21 C -0.196 4.196 22 C -0.104 4.104 23 N -0.089 5.089 24 C -0.026 4.026 25 C -0.167 4.167 26 C -0.162 4.162 27 C -0.086 4.086 28 C -0.007 4.007 29 C -0.155 4.155 30 H 0.050 0.950 31 H 0.059 0.941 32 H 0.086 0.914 33 H 0.208 0.792 34 H 0.058 0.942 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.079 0.921 39 H 0.173 0.827 40 H 0.217 0.783 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.093 0.907 44 H 0.130 0.870 45 H 0.124 0.876 46 H 0.084 0.916 47 H 0.121 0.879 48 H 0.130 0.870 49 H 0.099 0.901 50 H 0.111 0.889 51 H 0.112 0.888 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -8.546 -9.918 27.000 30.007 hybrid contribution 0.205 0.110 -0.972 0.999 sum -8.342 -9.808 26.028 29.038 Atomic orbital electron populations 1.22373 0.98415 1.00541 1.00174 1.20410 0.92402 0.94826 0.85885 0.93975 1.42707 1.78319 1.10574 1.06083 1.19618 1.34578 0.94064 0.88409 0.90967 1.25502 1.03377 0.96885 1.01253 1.69817 1.53006 1.10053 1.29188 0.85195 0.77770 0.77410 0.79743 1.21524 1.22365 1.19708 1.21293 0.99672 0.95078 0.94154 1.21698 1.00334 0.95464 0.97099 1.23090 1.00326 1.00151 0.82216 1.47841 1.54437 1.11381 1.17371 1.16714 0.77842 0.83239 0.83393 1.90734 1.60078 1.65340 1.28972 1.22286 1.10218 0.95801 0.86129 1.69730 1.19250 1.05017 1.23916 1.22680 1.04905 0.96416 0.95575 1.22029 1.04596 0.88618 0.95205 1.45183 1.41659 1.10839 1.11251 1.22374 1.01800 1.01248 0.77142 1.21982 0.97429 0.94108 1.03168 1.21720 1.02888 0.96156 0.95403 1.20570 1.01418 0.93227 0.93381 1.21776 1.00818 0.78788 0.99329 1.21927 1.01200 0.99915 0.92455 0.95026 0.94092 0.91413 0.79238 0.94180 0.91997 0.92472 0.92529 0.92111 0.82736 0.78334 0.89183 0.89169 0.90707 0.86961 0.87591 0.91555 0.87906 0.86992 0.90098 0.88871 0.88798 0.91485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.81 8.78 71.98 0.63 -5.17 16 2 C 0.17 6.96 2.72 44.99 0.12 7.08 16 3 H 0.04 1.72 8.08 -2.39 -0.02 1.70 16 4 N -0.74 -37.75 5.04 -322.95 -1.63 -39.38 16 5 C -0.23 -13.28 9.93 84.03 0.83 -12.45 16 6 H 0.07 3.95 7.83 -2.91 -0.02 3.93 16 7 C -0.08 -4.58 5.50 84.86 0.47 -4.11 16 8 N -0.97 -60.38 13.06 21.65 0.28 -60.09 16 9 Si 0.97 47.20 29.55 68.60 2.03 49.23 16 10 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 11 H -0.30 -14.57 7.11 99.48 0.71 -13.86 16 12 H -0.27 -12.59 7.11 99.48 0.71 -11.89 16 13 C -0.08 -2.77 2.14 -10.77 -0.02 -2.79 16 14 C -0.11 -3.70 4.81 30.67 0.15 -3.55 16 15 C 0.06 1.97 6.32 86.36 0.55 2.52 16 16 N -0.58 -17.01 2.97 -822.79 -2.45 -19.45 16 17 C 0.60 18.40 7.68 86.66 0.67 19.07 16 18 O -0.57 -18.53 14.65 -4.05 -0.06 -18.59 16 19 C 0.11 3.19 7.58 136.40 1.03 4.22 16 20 N -0.46 -12.92 7.59 -190.13 -1.44 -14.36 16 21 C -0.04 -0.95 11.82 83.68 0.99 0.04 16 22 C 0.02 0.29 6.57 41.21 0.27 0.56 16 23 N -0.41 -8.90 3.14 -502.15 -1.58 -10.48 16 24 C 0.10 1.54 6.16 86.48 0.53 2.08 16 25 C -0.13 -1.05 5.93 30.74 0.18 -0.87 16 26 C -0.12 -0.72 5.97 30.81 0.18 -0.54 16 27 C -0.05 -0.38 6.31 30.03 0.19 -0.19 16 28 C 0.11 2.95 6.41 86.37 0.55 3.51 16 29 C -0.12 -3.11 4.97 30.67 0.15 -2.96 16 30 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.04 1.58 6.46 -2.39 -0.02 1.57 16 32 H 0.07 2.09 6.46 -2.39 -0.02 2.07 16 33 H 0.37 20.53 6.04 -92.71 -0.56 19.97 16 34 H 0.25 15.08 8.31 -92.71 -0.77 14.31 16 35 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 36 H 0.06 2.04 6.51 -2.38 -0.02 2.02 16 37 H 0.06 2.26 6.46 -2.39 -0.02 2.24 16 38 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 39 H 0.16 4.90 3.70 -54.83 -0.20 4.70 16 40 H 0.20 3.16 8.06 -2.91 -0.02 3.13 16 41 H 0.09 1.75 7.17 -2.39 -0.02 1.74 16 42 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 43 H 0.07 0.66 8.12 -2.38 -0.02 0.64 16 44 H 0.11 0.44 8.14 -2.39 -0.02 0.43 16 45 H 0.11 0.14 8.14 -2.39 -0.02 0.12 16 46 H 0.07 0.47 8.12 -2.39 -0.02 0.45 16 47 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 48 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 49 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 50 H 0.09 2.36 7.05 -2.38 -0.02 2.34 16 51 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 52 H 0.07 1.84 6.51 -2.39 -0.02 1.82 16 Total: -1.00 -73.40 393.22 2.81 -70.59 By element: Atomic # 1 Polarization: 35.93 SS G_CDS: 0.18 Total: 36.11 kcal Atomic # 6 Polarization: -1.05 SS G_CDS: 7.48 Total: 6.43 kcal Atomic # 7 Polarization: -136.95 SS G_CDS: -6.81 Total: -143.76 kcal Atomic # 8 Polarization: -18.53 SS G_CDS: -0.06 Total: -18.59 kcal Atomic # 14 Polarization: 47.20 SS G_CDS: 2.03 Total: 49.23 kcal Total: -73.40 2.81 -70.59 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267494240.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.452 kcal (2) G-P(sol) polarization free energy of solvation -73.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.588 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds