Wall clock time and date at job start Wed Apr 1 2020 05:29:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47399 * 2 1 4 4 N 1.46498 * 109.46969 * 240.00173 * 2 1 3 5 5 C 1.36937 * 120.00423 * 84.99873 * 4 2 1 6 6 H 1.07997 * 119.99414 * 0.02562 * 5 4 2 7 7 C 1.38810 * 120.00306 * 179.97438 * 5 4 2 8 8 N 1.31618 * 119.99751 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 119.99977 * 0.02562 * 7 5 4 10 10 H 1.48502 * 109.47058 * 90.00172 * 9 7 5 11 11 H 1.48498 * 109.47017 * 209.99928 * 9 7 5 12 12 H 1.48495 * 109.46990 * 329.99900 * 9 7 5 13 13 C 1.53008 * 109.47273 * 120.00273 * 2 1 3 14 14 H 1.08997 * 109.49338 * 179.97438 * 13 2 1 15 15 C 1.53037 * 109.49577 * 300.00021 * 13 2 1 16 16 C 1.53039 * 109.53832 * 181.31853 * 15 13 2 17 17 C 1.53195 * 109.30896 * 298.63183 * 16 15 13 18 18 N 1.46927 * 108.77453 * 54.63611 * 17 16 15 19 19 C 1.34777 * 120.62697 * 126.36544 * 18 17 16 20 20 O 1.21686 * 119.99576 * 186.97087 * 19 18 17 21 21 C 1.46761 * 120.00490 * 6.97889 * 19 18 17 22 22 C 1.36834 * 126.91105 * 24.54728 * 21 19 18 23 23 N 1.33455 * 107.83121 * 180.02562 * 22 21 19 24 24 C 1.30553 * 109.69004 * 359.97438 * 23 22 21 25 25 N 1.34875 * 108.98430 * 0.04660 * 24 23 22 26 26 C 1.46446 * 124.98835 * 179.91255 * 25 24 23 27 27 C 1.53258 * 108.81790 * 342.94039 * 26 25 24 28 28 C 1.53163 * 109.43700 * 50.24461 * 27 26 25 29 29 C 1.51116 * 127.09711 * 180.09069 * 24 23 22 30 30 C 1.46919 * 118.73860 * 306.64032 * 18 17 16 31 31 H 1.09001 * 109.46968 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46858 * 299.99503 * 1 2 3 33 33 H 1.08998 * 109.47345 * 59.99848 * 1 2 3 34 34 H 0.97005 * 119.99918 * 265.00173 * 4 2 1 35 35 H 0.96996 * 119.99790 * 180.02562 * 8 7 5 36 36 H 1.08997 * 109.46078 * 61.29330 * 15 13 2 37 37 H 1.09003 * 109.44846 * 301.32983 * 15 13 2 38 38 H 1.08996 * 109.49966 * 178.68300 * 16 15 13 39 39 H 1.08998 * 109.50037 * 58.58227 * 16 15 13 40 40 H 1.08994 * 109.58448 * 294.84691 * 17 16 15 41 41 H 1.08999 * 109.58154 * 174.42107 * 17 16 15 42 42 H 1.07996 * 126.08642 * 0.02562 * 22 21 19 43 43 H 1.09003 * 109.58059 * 223.13700 * 26 25 24 44 44 H 1.09000 * 109.57685 * 102.74485 * 26 25 24 45 45 H 1.08997 * 109.47934 * 290.25044 * 27 26 25 46 46 H 1.09006 * 109.47826 * 170.23269 * 27 26 25 47 47 H 1.08999 * 109.51505 * 50.58293 * 28 27 26 48 48 H 1.09000 * 109.51262 * 170.73237 * 28 27 26 49 49 H 1.09007 * 109.70105 * 44.26396 * 29 24 23 50 50 H 1.08997 * 109.70814 * 283.64601 * 29 24 23 51 51 H 1.09000 * 109.58887 * 173.14798 * 30 18 17 52 52 H 1.09002 * 109.59048 * 293.57333 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1490 -0.0075 -2.3758 6 1 1.8926 1.0405 -2.4241 7 6 2.6122 -0.6617 -3.5091 8 7 2.7383 -0.0049 -4.6427 9 14 3.0565 -2.4742 -3.4252 10 1 1.8594 -3.2926 -3.7452 11 1 4.1323 -2.7660 -4.4063 12 1 3.5309 -2.8047 -2.0574 13 6 2.0400 -0.7213 1.2493 14 1 3.1300 -0.7219 1.2494 15 6 1.5302 -0.0004 2.4992 16 6 2.0668 -0.7017 3.7492 17 6 1.5534 -2.1448 3.7801 18 7 1.9150 -2.8025 2.5170 19 6 2.5907 -3.9686 2.5190 20 8 2.9950 -4.4392 1.4722 21 6 2.8387 -4.6710 3.7835 22 6 2.1076 -4.5716 4.9359 23 7 2.6680 -5.3712 5.8456 24 6 3.7083 -5.9659 5.3274 25 7 3.8534 -5.5613 4.0490 26 6 4.9114 -6.0097 3.1412 27 6 6.0351 -6.6452 3.9673 28 6 5.4394 -7.6781 4.9285 29 6 4.6273 -6.9531 6.0089 30 6 1.5313 -2.1617 1.2518 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 -0.3634 0.5138 -0.8899 34 1 2.2489 -1.6318 -1.1526 35 1 3.0616 -0.4622 -5.4346 36 1 0.4405 -0.0206 2.5110 37 1 1.8742 1.0339 2.4873 38 1 1.7225 -0.1740 4.6385 39 1 3.1565 -0.7037 3.7258 40 1 0.4695 -2.1445 3.8948 41 1 2.0111 -2.6775 4.6136 42 1 1.2328 -3.9557 5.0831 43 1 5.3030 -5.1568 2.5869 44 1 4.5082 -6.7458 2.4457 45 1 6.5489 -5.8715 4.5378 46 1 6.7438 -7.1359 3.3001 47 1 4.7880 -8.3559 4.3768 48 1 6.2435 -8.2457 5.3970 49 1 4.0372 -7.6760 6.5723 50 1 5.3013 -6.4235 6.6821 51 1 1.9742 -2.7058 0.4176 52 1 0.4455 -2.1629 1.1561 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268174541.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:56 Heat of formation + Delta-G solvation = 40.932113 kcal Electronic energy + Delta-G solvation = -31855.551602 eV Core-core repulsion = 27856.198434 eV Total energy + Delta-G solvation = -3999.353168 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.77501 -40.11990 -37.92166 -37.07575 -35.64147 -33.52377 -33.10867 -31.95327 -30.76079 -30.03895 -29.27651 -27.98613 -25.89751 -24.96727 -24.25808 -23.13109 -22.85123 -22.16686 -21.07730 -20.19003 -19.14417 -18.80442 -17.78051 -17.19542 -16.73917 -16.27017 -15.81244 -15.31743 -15.00769 -14.79904 -14.67735 -14.60055 -14.45634 -14.22476 -14.13430 -13.94345 -13.43661 -13.37554 -13.04509 -12.94885 -12.64385 -12.55039 -12.32005 -12.12175 -11.70397 -11.63819 -11.62404 -11.53535 -11.27605 -11.04950 -10.90137 -10.71226 -10.58411 -10.52875 -10.33072 -10.11523 -9.98178 -9.91544 -9.81169 -9.52003 -8.90392 -8.73196 -8.50424 -7.24178 -5.73786 -3.09006 1.16173 2.17143 2.57411 3.00157 3.14200 3.43583 3.49923 3.52542 3.84915 4.08443 4.14197 4.23009 4.37812 4.64088 4.68144 4.75164 4.83742 4.86729 4.90836 4.93126 5.05177 5.06798 5.11176 5.22963 5.24209 5.31497 5.34691 5.38996 5.42713 5.47192 5.56760 5.59756 5.64165 5.75349 5.76231 5.80442 5.90594 5.99595 6.01753 6.16782 6.24290 6.24968 6.27855 6.45501 6.48702 6.62075 6.76802 6.78982 7.04763 7.30045 7.65955 8.02532 8.06511 8.45417 9.24187 9.97305 10.16388 11.44527 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012789 B = 0.003238 C = 0.002693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2188.879521 B = 8646.469233 C =10394.190477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.186 3.814 3 H 0.059 0.941 4 N -0.750 5.750 5 C -0.241 4.241 6 H 0.090 0.910 7 C 0.006 3.994 8 N -0.935 5.935 9 Si 0.877 3.123 10 H -0.284 1.284 11 H -0.291 1.291 12 H -0.273 1.273 13 C -0.107 4.107 14 H 0.074 0.926 15 C -0.115 4.115 16 C -0.133 4.133 17 C 0.084 3.916 18 N -0.595 5.595 19 C 0.588 3.412 20 O -0.538 6.538 21 C -0.072 4.072 22 C 0.022 3.978 23 N -0.491 5.491 24 C 0.225 3.775 25 N -0.419 5.419 26 C 0.103 3.897 27 C -0.137 4.137 28 C -0.128 4.128 29 C -0.035 4.035 30 C 0.117 3.883 31 H 0.047 0.953 32 H 0.043 0.957 33 H 0.058 0.942 34 H 0.361 0.639 35 H 0.259 0.741 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.075 0.925 39 H 0.064 0.936 40 H 0.074 0.926 41 H 0.101 0.899 42 H 0.187 0.813 43 H 0.097 0.903 44 H 0.093 0.907 45 H 0.076 0.924 46 H 0.093 0.907 47 H 0.072 0.928 48 H 0.085 0.915 49 H 0.098 0.902 50 H 0.093 0.907 51 H 0.094 0.906 52 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.532 -11.668 26.123 28.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.076 3.924 3 H 0.077 0.923 4 N -0.394 5.394 5 C -0.371 4.371 6 H 0.108 0.892 7 C -0.190 4.190 8 N -0.583 5.583 9 Si 0.707 3.293 10 H -0.211 1.211 11 H -0.218 1.218 12 H -0.199 1.199 13 C -0.127 4.127 14 H 0.092 0.908 15 C -0.153 4.153 16 C -0.171 4.171 17 C -0.038 4.038 18 N -0.327 5.327 19 C 0.376 3.624 20 O -0.416 6.416 21 C -0.190 4.190 22 C -0.131 4.131 23 N -0.210 5.210 24 C -0.037 4.037 25 N -0.100 5.100 26 C -0.019 4.019 27 C -0.174 4.174 28 C -0.166 4.166 29 C -0.074 4.074 30 C -0.005 4.005 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.077 0.923 34 H 0.195 0.805 35 H 0.069 0.931 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.094 0.906 39 H 0.083 0.917 40 H 0.092 0.908 41 H 0.119 0.881 42 H 0.204 0.796 43 H 0.115 0.885 44 H 0.111 0.889 45 H 0.095 0.905 46 H 0.112 0.888 47 H 0.091 0.909 48 H 0.104 0.896 49 H 0.117 0.883 50 H 0.111 0.889 51 H 0.112 0.888 52 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 2.626 -11.898 26.008 28.720 hybrid contribution 0.498 -1.044 -1.084 1.585 sum 3.125 -12.941 24.924 28.257 Atomic orbital electron populations 1.22543 0.98932 1.00893 1.00620 1.20148 0.92053 0.95581 0.84630 0.92342 1.42891 1.79714 1.09585 1.07176 1.19061 1.36871 0.95583 0.85577 0.89174 1.24638 1.01404 0.97364 0.95595 1.69699 1.52820 1.35528 1.00255 0.86650 0.78277 0.86933 0.77400 1.21056 1.21770 1.19942 1.21744 1.01113 0.94040 0.95817 0.90799 1.21625 1.01059 0.99346 0.93223 1.21917 1.01381 0.94904 0.98938 1.22424 1.00679 0.94220 0.86519 1.47794 1.55902 1.20733 1.08268 1.16844 0.78354 0.80763 0.86463 1.90860 1.51183 1.66662 1.32916 1.20679 0.97094 1.02949 0.98278 1.22965 1.01403 1.00688 0.88084 1.69948 1.08118 1.11320 1.31589 1.23453 0.97332 1.00652 0.82285 1.45164 1.21679 1.31351 1.11793 1.22121 0.86544 1.01448 0.91791 1.21969 0.97125 0.99311 0.99027 1.21713 1.00191 0.97888 0.96780 1.20290 0.95295 0.94781 0.96989 1.21792 1.00235 0.93447 0.84991 0.93433 0.93804 0.92331 0.80510 0.93121 0.91137 0.91336 0.90601 0.91683 0.90812 0.88107 0.79606 0.88496 0.88883 0.90499 0.88834 0.90915 0.89638 0.88318 0.88887 0.88813 0.90484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.83 8.79 37.16 0.33 -2.50 16 2 C 0.19 3.45 2.72 -67.93 -0.18 3.27 16 3 H 0.06 1.13 8.08 -51.93 -0.42 0.71 16 4 N -0.75 -17.84 4.85 -53.43 -0.26 -18.10 16 5 C -0.24 -6.84 10.41 -15.06 -0.16 -7.00 16 6 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16 7 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 8 N -0.94 -29.85 13.97 55.49 0.78 -29.07 16 9 Si 0.88 23.16 27.74 -169.99 -4.71 18.45 16 10 H -0.28 -7.46 7.11 56.52 0.40 -7.06 16 11 H -0.29 -7.75 7.11 56.52 0.40 -7.35 16 12 H -0.27 -7.06 6.52 56.52 0.37 -6.69 16 13 C -0.11 -1.64 2.32 -90.72 -0.21 -1.86 16 14 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 15 C -0.11 -1.31 4.78 -26.69 -0.13 -1.44 16 16 C -0.13 -1.29 6.08 -26.61 -0.16 -1.45 16 17 C 0.08 0.83 5.17 -3.71 -0.02 0.81 16 18 N -0.59 -8.17 2.98 -174.55 -0.52 -8.69 16 19 C 0.59 9.21 7.58 -12.82 -0.10 9.11 16 20 O -0.54 -10.42 15.56 5.20 0.08 -10.34 16 21 C -0.07 -0.97 6.48 -82.36 -0.53 -1.50 16 22 C 0.02 0.26 9.53 -17.35 -0.17 0.09 16 23 N -0.49 -6.08 11.20 -10.35 -0.12 -6.19 16 24 C 0.22 2.44 7.64 -155.32 -1.19 1.25 16 25 N -0.42 -4.99 3.15 -109.76 -0.35 -5.34 16 26 C 0.10 1.02 6.11 -3.94 -0.02 1.00 16 27 C -0.14 -0.84 5.95 -26.51 -0.16 -1.00 16 28 C -0.13 -0.66 5.96 -26.45 -0.16 -0.82 16 29 C -0.03 -0.23 6.33 -27.49 -0.17 -0.40 16 30 C 0.12 1.83 5.21 -3.94 -0.02 1.81 16 31 H 0.05 0.77 6.32 -51.93 -0.33 0.44 16 32 H 0.04 0.59 6.46 -51.93 -0.34 0.25 16 33 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 34 H 0.36 8.73 4.03 -40.82 -0.16 8.57 16 35 H 0.26 7.90 8.31 -40.82 -0.34 7.56 16 36 H 0.07 0.75 6.50 -51.93 -0.34 0.41 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.10 0.93 3.97 -51.93 -0.21 0.72 16 42 H 0.19 1.71 6.02 -52.49 -0.32 1.39 16 43 H 0.10 1.10 8.01 -51.93 -0.42 0.68 16 44 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 45 H 0.08 0.47 8.12 -51.93 -0.42 0.04 16 46 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.07 0.42 8.12 -51.93 -0.42 -0.01 16 48 H 0.09 0.27 8.14 -51.93 -0.42 -0.16 16 49 H 0.10 0.56 8.14 -51.92 -0.42 0.14 16 50 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 51 H 0.09 1.82 5.58 -51.93 -0.29 1.53 16 52 H 0.08 1.13 6.16 -51.93 -0.32 0.81 16 LS Contribution 390.02 15.07 5.88 5.88 Total: -1.00 -36.01 390.02 -10.59 -46.59 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: -8.22 Total: 7.36 kcal Atomic # 6 Polarization: 2.61 SS G_CDS: -3.15 Total: -0.54 kcal Atomic # 7 Polarization: -66.94 SS G_CDS: -0.47 Total: -67.40 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: 0.08 Total: -10.34 kcal Atomic # 14 Polarization: 23.16 SS G_CDS: -4.71 Total: 18.45 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -36.01 -10.59 -46.59 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268174541.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.527 kcal (2) G-P(sol) polarization free energy of solvation -36.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds