Wall clock time and date at job start Wed Apr 1 2020 05:29:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47399 * 2 1 4 4 N 1.46498 * 109.46969 * 240.00173 * 2 1 3 5 5 C 1.36937 * 120.00423 * 84.99873 * 4 2 1 6 6 H 1.07997 * 119.99414 * 0.02562 * 5 4 2 7 7 C 1.38810 * 120.00306 * 179.97438 * 5 4 2 8 8 N 1.31618 * 119.99751 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 119.99977 * 0.02562 * 7 5 4 10 10 H 1.48502 * 109.47058 * 90.00172 * 9 7 5 11 11 H 1.48498 * 109.47017 * 209.99928 * 9 7 5 12 12 H 1.48495 * 109.46990 * 329.99900 * 9 7 5 13 13 C 1.53008 * 109.47273 * 120.00273 * 2 1 3 14 14 H 1.08997 * 109.49338 * 179.97438 * 13 2 1 15 15 C 1.53037 * 109.49577 * 300.00021 * 13 2 1 16 16 C 1.53039 * 109.53832 * 181.31853 * 15 13 2 17 17 C 1.53195 * 109.30896 * 298.63183 * 16 15 13 18 18 N 1.46927 * 108.77453 * 54.63611 * 17 16 15 19 19 C 1.34777 * 120.62697 * 126.36544 * 18 17 16 20 20 O 1.21686 * 119.99576 * 186.97087 * 19 18 17 21 21 C 1.46761 * 120.00490 * 6.97889 * 19 18 17 22 22 C 1.36834 * 126.91105 * 24.54728 * 21 19 18 23 23 N 1.33455 * 107.83121 * 180.02562 * 22 21 19 24 24 C 1.30553 * 109.69004 * 359.97438 * 23 22 21 25 25 N 1.34875 * 108.98430 * 0.04660 * 24 23 22 26 26 C 1.46446 * 124.98835 * 179.91255 * 25 24 23 27 27 C 1.53258 * 108.81790 * 342.94039 * 26 25 24 28 28 C 1.53163 * 109.43700 * 50.24461 * 27 26 25 29 29 C 1.51116 * 127.09711 * 180.09069 * 24 23 22 30 30 C 1.46919 * 118.73860 * 306.64032 * 18 17 16 31 31 H 1.09001 * 109.46968 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46858 * 299.99503 * 1 2 3 33 33 H 1.08998 * 109.47345 * 59.99848 * 1 2 3 34 34 H 0.97005 * 119.99918 * 265.00173 * 4 2 1 35 35 H 0.96996 * 119.99790 * 180.02562 * 8 7 5 36 36 H 1.08997 * 109.46078 * 61.29330 * 15 13 2 37 37 H 1.09003 * 109.44846 * 301.32983 * 15 13 2 38 38 H 1.08996 * 109.49966 * 178.68300 * 16 15 13 39 39 H 1.08998 * 109.50037 * 58.58227 * 16 15 13 40 40 H 1.08994 * 109.58448 * 294.84691 * 17 16 15 41 41 H 1.08999 * 109.58154 * 174.42107 * 17 16 15 42 42 H 1.07996 * 126.08642 * 0.02562 * 22 21 19 43 43 H 1.09003 * 109.58059 * 223.13700 * 26 25 24 44 44 H 1.09000 * 109.57685 * 102.74485 * 26 25 24 45 45 H 1.08997 * 109.47934 * 290.25044 * 27 26 25 46 46 H 1.09006 * 109.47826 * 170.23269 * 27 26 25 47 47 H 1.08999 * 109.51505 * 50.58293 * 28 27 26 48 48 H 1.09000 * 109.51262 * 170.73237 * 28 27 26 49 49 H 1.09007 * 109.70105 * 44.26396 * 29 24 23 50 50 H 1.08997 * 109.70814 * 283.64601 * 29 24 23 51 51 H 1.09000 * 109.58887 * 173.14798 * 30 18 17 52 52 H 1.09002 * 109.59048 * 293.57333 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1490 -0.0075 -2.3758 6 1 1.8926 1.0405 -2.4241 7 6 2.6122 -0.6617 -3.5091 8 7 2.7383 -0.0049 -4.6427 9 14 3.0565 -2.4742 -3.4252 10 1 1.8594 -3.2926 -3.7452 11 1 4.1323 -2.7660 -4.4063 12 1 3.5309 -2.8047 -2.0574 13 6 2.0400 -0.7213 1.2493 14 1 3.1300 -0.7219 1.2494 15 6 1.5302 -0.0004 2.4992 16 6 2.0668 -0.7017 3.7492 17 6 1.5534 -2.1448 3.7801 18 7 1.9150 -2.8025 2.5170 19 6 2.5907 -3.9686 2.5190 20 8 2.9950 -4.4392 1.4722 21 6 2.8387 -4.6710 3.7835 22 6 2.1076 -4.5716 4.9359 23 7 2.6680 -5.3712 5.8456 24 6 3.7083 -5.9659 5.3274 25 7 3.8534 -5.5613 4.0490 26 6 4.9114 -6.0097 3.1412 27 6 6.0351 -6.6452 3.9673 28 6 5.4394 -7.6781 4.9285 29 6 4.6273 -6.9531 6.0089 30 6 1.5313 -2.1617 1.2518 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 -0.3634 0.5138 -0.8899 34 1 2.2489 -1.6318 -1.1526 35 1 3.0616 -0.4622 -5.4346 36 1 0.4405 -0.0206 2.5110 37 1 1.8742 1.0339 2.4873 38 1 1.7225 -0.1740 4.6385 39 1 3.1565 -0.7037 3.7258 40 1 0.4695 -2.1445 3.8948 41 1 2.0111 -2.6775 4.6136 42 1 1.2328 -3.9557 5.0831 43 1 5.3030 -5.1568 2.5869 44 1 4.5082 -6.7458 2.4457 45 1 6.5489 -5.8715 4.5378 46 1 6.7438 -7.1359 3.3001 47 1 4.7880 -8.3559 4.3768 48 1 6.2435 -8.2457 5.3970 49 1 4.0372 -7.6760 6.5723 50 1 5.3013 -6.4235 6.6821 51 1 1.9742 -2.7058 0.4176 52 1 0.4455 -2.1629 1.1561 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268174541.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:54 Heat of formation + Delta-G solvation = 17.458284 kcal Electronic energy + Delta-G solvation = -31856.569504 eV Core-core repulsion = 27856.198434 eV Total energy + Delta-G solvation = -4000.371070 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -43.63806 -41.24767 -39.21834 -37.77176 -37.06157 -34.78549 -34.26409 -33.40063 -32.12783 -31.10029 -30.33348 -29.21517 -26.92370 -26.20576 -25.38753 -24.53328 -23.76190 -23.00048 -22.24373 -21.31216 -20.24744 -19.81199 -19.64066 -18.33174 -17.72910 -17.15185 -16.98573 -16.66892 -16.24463 -15.98990 -15.81007 -15.67993 -15.26594 -15.19441 -15.07789 -14.99945 -14.71413 -14.45280 -14.38443 -14.19516 -14.06856 -13.81665 -13.54730 -13.13389 -12.99297 -12.93408 -12.68526 -12.40336 -12.28906 -12.11227 -12.02980 -12.00221 -11.91913 -11.86089 -11.75225 -11.54178 -11.35254 -11.27731 -11.02605 -10.96485 -10.78210 -9.81049 -9.45071 -9.34650 -8.07443 -5.37840 0.20169 1.27406 1.29346 1.31748 1.38153 1.66836 2.01508 2.10054 2.40591 3.16821 3.24748 3.32251 3.48902 3.51334 3.65116 3.70058 3.78636 3.85467 3.97613 4.02696 4.08546 4.20413 4.22884 4.26419 4.33199 4.36515 4.43248 4.53357 4.58813 4.65074 4.75114 4.77134 4.80022 4.82097 4.87022 4.88552 5.01883 5.02888 5.07214 5.11176 5.16518 5.20933 5.21688 5.32816 5.36874 5.41517 5.46973 5.65895 5.75598 5.97071 6.18607 6.22128 6.76398 6.95025 7.04226 7.82807 7.98634 9.14577 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012789 B = 0.003238 C = 0.002693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2188.879521 B = 8646.469233 C =10394.190477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.176 3.824 3 H 0.049 0.951 4 N -0.757 5.757 5 C -0.218 4.218 6 H 0.066 0.934 7 C -0.058 4.058 8 N -0.981 5.981 9 Si 0.940 3.060 10 H -0.280 1.280 11 H -0.292 1.292 12 H -0.271 1.271 13 C -0.095 4.095 14 H 0.047 0.953 15 C -0.109 4.109 16 C -0.127 4.127 17 C 0.079 3.921 18 N -0.590 5.590 19 C 0.582 3.418 20 O -0.591 6.591 21 C -0.106 4.106 22 C 0.038 3.962 23 N -0.514 5.514 24 C 0.232 3.768 25 N -0.428 5.428 26 C 0.099 3.901 27 C -0.129 4.129 28 C -0.121 4.121 29 C -0.036 4.036 30 C 0.121 3.879 31 H 0.051 0.949 32 H 0.086 0.914 33 H 0.031 0.969 34 H 0.359 0.641 35 H 0.257 0.743 36 H 0.091 0.909 37 H 0.075 0.925 38 H 0.113 0.887 39 H 0.049 0.951 40 H 0.104 0.896 41 H 0.111 0.889 42 H 0.212 0.788 43 H 0.073 0.927 44 H 0.081 0.919 45 H 0.081 0.919 46 H 0.111 0.889 47 H 0.066 0.934 48 H 0.116 0.884 49 H 0.112 0.888 50 H 0.112 0.888 51 H 0.050 0.950 52 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.986 -12.767 30.466 33.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.069 3.931 3 H 0.068 0.932 4 N -0.401 5.401 5 C -0.350 4.350 6 H 0.084 0.916 7 C -0.249 4.249 8 N -0.632 5.632 9 Si 0.769 3.231 10 H -0.206 1.206 11 H -0.219 1.219 12 H -0.197 1.197 13 C -0.115 4.115 14 H 0.066 0.934 15 C -0.147 4.147 16 C -0.165 4.165 17 C -0.041 4.041 18 N -0.321 5.321 19 C 0.371 3.629 20 O -0.473 6.473 21 C -0.223 4.223 22 C -0.116 4.116 23 N -0.233 5.233 24 C -0.030 4.030 25 N -0.109 5.109 26 C -0.023 4.023 27 C -0.166 4.166 28 C -0.159 4.159 29 C -0.075 4.075 30 C -0.001 4.001 31 H 0.070 0.930 32 H 0.105 0.895 33 H 0.051 0.949 34 H 0.193 0.807 35 H 0.066 0.934 36 H 0.109 0.891 37 H 0.094 0.906 38 H 0.131 0.869 39 H 0.068 0.932 40 H 0.122 0.878 41 H 0.128 0.872 42 H 0.229 0.771 43 H 0.091 0.909 44 H 0.099 0.901 45 H 0.100 0.900 46 H 0.129 0.871 47 H 0.084 0.916 48 H 0.135 0.865 49 H 0.130 0.870 50 H 0.130 0.870 51 H 0.069 0.931 52 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 2.053 -12.973 30.435 33.148 hybrid contribution 0.645 -0.624 -2.324 2.491 sum 2.697 -13.596 28.111 31.343 Atomic orbital electron populations 1.22390 0.96592 1.01445 1.01446 1.20455 0.93603 0.95003 0.84076 0.93248 1.43026 1.79978 1.09578 1.07493 1.19084 1.34180 0.94642 0.87057 0.91649 1.25281 1.02897 1.01193 0.95560 1.69838 1.55206 1.37178 1.01026 0.85643 0.77908 0.82407 0.77155 1.20613 1.21901 1.19728 1.21574 0.99482 0.94128 0.96314 0.93434 1.21627 1.02198 0.99259 0.91573 1.21910 1.00478 0.94724 0.99352 1.22763 1.02634 0.94043 0.84698 1.47861 1.55090 1.20204 1.08955 1.17249 0.77816 0.81111 0.86692 1.90819 1.53490 1.68168 1.34829 1.20532 0.99031 1.04824 0.97914 1.23383 1.01274 0.99903 0.87049 1.70025 1.09081 1.12251 1.31920 1.24374 0.96988 0.99916 0.81764 1.45369 1.21763 1.31295 1.12456 1.22203 0.87387 1.00394 0.92300 1.21993 0.95826 0.99647 0.99140 1.21723 1.00751 0.97329 0.96099 1.20581 0.95144 0.94328 0.97411 1.21585 1.00607 0.92997 0.84920 0.92983 0.89523 0.94930 0.80719 0.93385 0.89080 0.90609 0.86881 0.93227 0.87762 0.87174 0.77139 0.90892 0.90057 0.90036 0.87078 0.91563 0.86528 0.86955 0.87007 0.93095 0.88949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.04 8.79 71.98 0.63 -4.41 16 2 C 0.18 6.53 2.72 44.99 0.12 6.65 16 3 H 0.05 1.92 8.08 -2.39 -0.02 1.90 16 4 N -0.76 -36.86 4.85 -322.94 -1.57 -38.43 16 5 C -0.22 -12.80 10.41 84.03 0.87 -11.92 16 6 H 0.07 4.10 8.06 -2.91 -0.02 4.08 16 7 C -0.06 -3.56 5.50 84.86 0.47 -3.09 16 8 N -0.98 -64.78 13.97 21.65 0.30 -64.48 16 9 Si 0.94 49.84 27.74 68.60 1.90 51.74 16 10 H -0.28 -14.52 7.11 99.48 0.71 -13.81 16 11 H -0.29 -15.45 7.11 99.48 0.71 -14.74 16 12 H -0.27 -14.13 6.52 99.48 0.65 -13.48 16 13 C -0.09 -2.85 2.32 -10.86 -0.03 -2.88 16 14 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 15 C -0.11 -2.14 4.78 30.62 0.15 -1.99 16 16 C -0.13 -1.99 6.08 30.67 0.19 -1.80 16 17 C 0.08 1.31 5.17 86.36 0.45 1.75 16 18 N -0.59 -15.75 2.98 -824.36 -2.46 -18.21 16 19 C 0.58 18.64 7.58 86.47 0.66 19.30 16 20 O -0.59 -24.29 15.56 -4.30 -0.07 -24.36 16 21 C -0.11 -2.82 6.48 40.14 0.26 -2.56 16 22 C 0.04 0.82 9.53 84.12 0.80 1.62 16 23 N -0.51 -11.62 11.20 -186.67 -2.09 -13.71 16 24 C 0.23 4.62 7.64 138.30 1.06 5.67 16 25 N -0.43 -10.08 3.15 -501.17 -1.58 -11.66 16 26 C 0.10 2.03 6.11 86.48 0.53 2.56 16 27 C -0.13 -1.38 5.95 30.74 0.18 -1.20 16 28 C -0.12 -0.91 5.96 30.77 0.18 -0.73 16 29 C -0.04 -0.37 6.33 30.11 0.19 -0.18 16 30 C 0.12 3.78 5.21 86.22 0.45 4.23 16 31 H 0.05 1.60 6.32 -2.39 -0.02 1.58 16 32 H 0.09 2.00 6.46 -2.39 -0.02 1.99 16 33 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.36 17.85 4.03 -92.70 -0.37 17.48 16 35 H 0.26 16.23 8.31 -92.71 -0.77 15.46 16 36 H 0.09 1.47 6.50 -2.39 -0.02 1.45 16 37 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.11 1.67 3.97 -2.39 -0.01 1.66 16 42 H 0.21 3.17 6.02 -2.91 -0.02 3.15 16 43 H 0.07 1.81 8.01 -2.39 -0.02 1.79 16 44 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 45 H 0.08 0.82 8.12 -2.39 -0.02 0.81 16 46 H 0.11 0.81 8.14 -2.38 -0.02 0.79 16 47 H 0.07 0.62 8.12 -2.39 -0.02 0.60 16 48 H 0.12 0.23 8.14 -2.39 -0.02 0.21 16 49 H 0.11 0.89 8.14 -2.38 -0.02 0.87 16 50 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 51 H 0.05 2.05 5.58 -2.39 -0.01 2.04 16 52 H 0.09 2.57 6.16 -2.39 -0.01 2.55 16 Total: -1.00 -83.90 390.02 2.11 -81.79 By element: Atomic # 1 Polarization: 25.78 SS G_CDS: 0.50 Total: 26.28 kcal Atomic # 6 Polarization: 3.87 SS G_CDS: 7.16 Total: 11.03 kcal Atomic # 7 Polarization: -139.10 SS G_CDS: -7.39 Total: -146.48 kcal Atomic # 8 Polarization: -24.29 SS G_CDS: -0.07 Total: -24.36 kcal Atomic # 14 Polarization: 49.84 SS G_CDS: 1.90 Total: 51.74 kcal Total: -83.90 2.11 -81.79 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268174541.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.253 kcal (2) G-P(sol) polarization free energy of solvation -83.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds