Wall clock time and date at job start Wed Apr 1 2020 05:30:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.47565 * 2 1 4 4 N 1.46504 * 109.47161 * 120.00231 * 2 1 3 5 5 C 1.36933 * 119.99934 * 274.99907 * 4 2 1 6 6 H 1.08006 * 119.99812 * 359.97438 * 5 4 2 7 7 C 1.38811 * 120.00008 * 180.02562 * 5 4 2 8 8 N 1.31621 * 120.00242 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99927 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47457 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47489 * 119.99640 * 9 7 5 12 12 H 1.48504 * 109.47160 * 239.99592 * 9 7 5 13 13 C 1.53002 * 109.46926 * 240.00017 * 2 1 3 14 14 H 1.09000 * 109.52585 * 299.91763 * 13 2 1 15 15 C 1.53038 * 109.49764 * 59.99915 * 13 2 1 16 16 C 1.53047 * 109.52741 * 181.30759 * 15 13 2 17 17 C 1.53198 * 109.31163 * 298.64181 * 16 15 13 18 18 N 1.46921 * 108.77336 * 54.63612 * 17 16 15 19 19 C 1.34778 * 120.63276 * 126.36850 * 18 17 16 20 20 O 1.21676 * 120.00281 * 181.13243 * 19 18 17 21 21 C 1.46770 * 119.99576 * 1.12919 * 19 18 17 22 22 C 1.36824 * 126.91161 * 28.24013 * 21 19 18 23 23 N 1.33458 * 107.83180 * 179.81743 * 22 21 19 24 24 C 1.30547 * 109.68545 * 0.42472 * 23 22 21 25 25 N 1.34871 * 108.99219 * 359.76609 * 24 23 22 26 26 C 1.46440 * 124.99817 * 179.90264 * 25 24 23 27 27 C 1.53260 * 108.81672 * 342.95123 * 26 25 24 28 28 C 1.53157 * 109.44624 * 50.22010 * 27 26 25 29 29 C 1.51117 * 127.09307 * 179.77756 * 24 23 22 30 30 C 1.46928 * 118.74172 * 306.38643 * 18 17 16 31 31 H 1.09003 * 109.47083 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47271 * 299.99730 * 1 2 3 33 33 H 1.08999 * 109.47440 * 60.00299 * 1 2 3 34 34 H 0.97004 * 119.99823 * 95.00142 * 4 2 1 35 35 H 0.96990 * 120.00205 * 180.02562 * 8 7 5 36 36 H 1.09006 * 109.45867 * 61.29940 * 15 13 2 37 37 H 1.08997 * 109.46397 * 301.32384 * 15 13 2 38 38 H 1.09000 * 109.49300 * 58.59517 * 16 15 13 39 39 H 1.09001 * 109.49654 * 178.69103 * 16 15 13 40 40 H 1.08999 * 109.58156 * 174.42166 * 17 16 15 41 41 H 1.08992 * 109.58726 * 294.84586 * 17 16 15 42 42 H 1.07997 * 126.08410 * 359.96212 * 22 21 19 43 43 H 1.09001 * 109.58135 * 102.75068 * 26 25 24 44 44 H 1.09001 * 109.58330 * 223.14960 * 26 25 24 45 45 H 1.09005 * 109.47557 * 170.21201 * 27 26 25 46 46 H 1.09002 * 109.47670 * 290.22480 * 27 26 25 47 47 H 1.08997 * 109.50890 * 50.59338 * 28 27 26 48 48 H 1.08995 * 109.51122 * 170.73920 * 28 27 26 49 49 H 1.09003 * 109.70736 * 44.27291 * 29 24 23 50 50 H 1.09001 * 109.70932 * 283.64436 * 29 24 23 51 51 H 1.09001 * 109.58681 * 173.39424 * 30 18 17 52 52 H 1.08997 * 109.58722 * 293.82800 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.1491 -0.0076 2.3757 6 1 1.8926 1.0405 2.4241 7 6 2.6123 -0.6619 3.5090 8 7 2.9253 -1.9389 3.4499 9 14 2.7900 0.2698 5.1182 10 1 2.3752 1.6820 4.9212 11 1 1.9298 -0.3595 6.1523 12 1 4.2070 0.2278 5.5607 13 6 2.0399 -0.7213 -1.2493 14 1 1.6782 -1.7495 -1.2494 15 6 1.5301 -0.0003 -2.4992 16 6 2.0127 -0.7400 -3.7491 17 6 3.5444 -0.7370 -3.7798 18 7 4.0437 -1.2970 -2.5166 19 6 4.9180 -2.3228 -2.5182 20 8 5.3082 -2.7913 -1.4652 21 6 5.3992 -2.8747 -3.7902 22 6 5.5232 -2.2102 -4.9798 23 7 5.9986 -3.0717 -5.8815 24 6 6.1705 -4.2402 -5.3254 25 7 5.8109 -4.1658 -4.0276 26 6 5.8622 -5.2784 -3.0768 27 6 5.9670 -6.5924 -3.8586 28 6 7.0963 -6.4849 -4.8876 29 6 6.6854 -5.4975 -5.9869 30 6 3.5716 -0.7180 -1.2514 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 2.2490 -1.6319 1.1525 35 1 3.2487 -2.3962 4.2418 36 1 1.9124 1.0204 -2.5110 37 1 0.4403 0.0202 -2.4876 38 1 1.6513 -1.7681 -3.7256 39 1 1.6301 -0.2395 -4.6386 40 1 3.8943 -1.3461 -4.6132 41 1 3.9056 0.2849 -3.8944 42 1 5.2818 -1.1726 -5.1569 43 1 6.7333 -5.1671 -2.4310 44 1 4.9553 -5.2844 -2.4721 45 1 6.1800 -7.4095 -3.1692 46 1 5.0250 -6.7861 -4.3717 47 1 8.0023 -6.1282 -4.3977 48 1 7.2815 -7.4643 -5.3285 49 1 7.5488 -5.2589 -6.6080 50 1 5.9000 -5.9376 -6.6015 51 1 3.9395 -1.3146 -0.4167 52 1 3.9350 0.3056 -1.1600 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268174542.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:30:03 Heat of formation + Delta-G solvation = 36.788158 kcal Electronic energy + Delta-G solvation = -31678.452071 eV Core-core repulsion = 27678.919207 eV Total energy + Delta-G solvation = -3999.532864 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.66522 -39.88159 -37.67275 -36.97191 -35.44988 -33.42103 -33.01288 -31.74963 -30.69077 -29.82482 -28.96813 -27.96083 -25.67301 -24.86899 -23.94837 -23.03903 -22.65745 -22.09872 -21.00878 -19.78522 -19.47599 -18.89716 -17.36378 -16.95738 -16.63270 -16.14805 -15.56273 -15.23270 -14.91148 -14.83307 -14.62065 -14.49890 -14.19326 -14.05146 -13.85463 -13.69091 -13.46981 -13.19896 -13.03104 -12.75600 -12.62896 -12.32403 -12.18246 -11.91450 -11.58164 -11.53342 -11.44124 -11.30037 -11.03131 -10.93316 -10.85030 -10.69918 -10.57047 -10.39788 -10.24233 -10.11910 -9.85191 -9.79692 -9.66025 -9.52482 -8.88176 -8.59530 -8.37563 -6.90617 -5.70539 -2.99641 1.30955 2.28999 2.69123 3.16303 3.28921 3.46304 3.51578 3.54049 3.94535 4.18594 4.24377 4.32532 4.50881 4.61733 4.81186 4.85906 4.93896 4.97352 5.02497 5.06546 5.16151 5.17153 5.25950 5.31927 5.40027 5.41103 5.43982 5.52363 5.53170 5.61782 5.71620 5.73041 5.81350 5.83199 5.95117 6.00492 6.06908 6.15716 6.22166 6.23745 6.35568 6.44394 6.49220 6.53772 6.72719 6.75596 6.88053 6.93491 7.11971 7.49583 7.75173 7.76847 8.25467 8.47042 9.58328 10.16109 10.50495 11.51772 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013107 B = 0.002908 C = 0.002522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2135.764765 B = 9625.579062 C =11100.959530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.180 3.820 3 H 0.047 0.953 4 N -0.724 5.724 5 C -0.237 4.237 6 H 0.070 0.930 7 C -0.013 4.013 8 N -0.929 5.929 9 Si 0.903 3.097 10 H -0.281 1.281 11 H -0.293 1.293 12 H -0.292 1.292 13 C -0.102 4.102 14 H 0.069 0.931 15 C -0.115 4.115 16 C -0.132 4.132 17 C 0.079 3.921 18 N -0.594 5.594 19 C 0.586 3.414 20 O -0.531 6.531 21 C -0.067 4.067 22 C 0.016 3.984 23 N -0.492 5.492 24 C 0.222 3.778 25 N -0.419 5.419 26 C 0.102 3.898 27 C -0.136 4.136 28 C -0.128 4.128 29 C -0.034 4.034 30 C 0.125 3.875 31 H 0.044 0.956 32 H 0.052 0.948 33 H 0.039 0.961 34 H 0.384 0.616 35 H 0.254 0.746 36 H 0.064 0.936 37 H 0.069 0.931 38 H 0.063 0.937 39 H 0.073 0.927 40 H 0.103 0.897 41 H 0.072 0.928 42 H 0.188 0.812 43 H 0.094 0.906 44 H 0.097 0.903 45 H 0.093 0.907 46 H 0.076 0.924 47 H 0.072 0.928 48 H 0.084 0.916 49 H 0.098 0.902 50 H 0.092 0.908 51 H 0.108 0.892 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.147 -6.135 -22.873 24.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.070 3.930 3 H 0.065 0.935 4 N -0.366 5.366 5 C -0.368 4.368 6 H 0.088 0.912 7 C -0.209 4.209 8 N -0.578 5.578 9 Si 0.735 3.265 10 H -0.206 1.206 11 H -0.220 1.220 12 H -0.219 1.219 13 C -0.122 4.122 14 H 0.087 0.913 15 C -0.153 4.153 16 C -0.170 4.170 17 C -0.044 4.044 18 N -0.327 5.327 19 C 0.372 3.628 20 O -0.408 6.408 21 C -0.185 4.185 22 C -0.137 4.137 23 N -0.210 5.210 24 C -0.040 4.040 25 N -0.100 5.100 26 C -0.019 4.019 27 C -0.174 4.174 28 C -0.166 4.166 29 C -0.073 4.073 30 C 0.004 3.996 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.058 0.942 34 H 0.218 0.782 35 H 0.064 0.936 36 H 0.082 0.918 37 H 0.088 0.912 38 H 0.082 0.918 39 H 0.091 0.909 40 H 0.121 0.879 41 H 0.090 0.910 42 H 0.204 0.796 43 H 0.112 0.888 44 H 0.115 0.885 45 H 0.112 0.888 46 H 0.094 0.906 47 H 0.091 0.909 48 H 0.103 0.897 49 H 0.116 0.884 50 H 0.110 0.890 51 H 0.126 0.874 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.544 -6.216 -22.805 24.070 hybrid contribution -0.155 0.145 1.905 1.917 sum 4.390 -6.071 -20.899 22.202 Atomic orbital electron populations 1.22477 0.99290 1.00776 0.99904 1.20176 0.91838 0.95275 0.85739 0.93452 1.42464 1.78069 1.10742 1.05311 1.19238 1.36452 0.93792 0.87318 0.91228 1.24732 1.02254 0.95944 0.97984 1.69676 1.50814 1.08616 1.28655 0.86172 0.77276 0.78776 0.84290 1.20627 1.22005 1.21946 1.21756 0.94531 1.00494 0.95440 0.91287 1.21644 1.01060 0.99096 0.93546 1.21906 0.94865 1.01452 0.98798 1.22480 0.95134 0.99723 0.87024 1.47852 1.43080 1.33411 1.08340 1.16841 0.79335 0.80116 0.86468 1.90890 1.57463 1.60102 1.32359 1.20753 1.13508 0.86567 0.97692 1.22937 1.02893 1.00147 0.87708 1.69930 1.19228 0.99579 1.32278 1.23415 1.02472 0.96693 0.81441 1.45158 1.45772 1.08673 1.10366 1.22121 1.05313 0.83554 0.90952 1.21963 1.00228 0.96265 0.98935 1.21710 0.98616 1.00033 0.96210 1.20274 1.01884 0.88025 0.97103 1.21757 0.93958 0.99003 0.84873 0.93662 0.92876 0.94243 0.78230 0.93637 0.91770 0.91205 0.91775 0.90859 0.87910 0.90999 0.79556 0.88797 0.88469 0.88837 0.90551 0.90908 0.89714 0.88406 0.88977 0.87394 0.91433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.91 9.14 37.15 0.34 -2.57 16 2 C 0.18 3.47 2.47 -67.93 -0.17 3.31 16 3 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 4 N -0.72 -18.00 4.52 -53.42 -0.24 -18.24 16 5 C -0.24 -6.55 9.93 -15.06 -0.15 -6.70 16 6 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 7 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 8 N -0.93 -28.60 13.06 55.49 0.72 -27.87 16 9 Si 0.90 22.73 29.55 -169.99 -5.02 17.71 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.29 -7.42 7.11 56.52 0.40 -7.01 16 12 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 13 C -0.10 -1.66 1.97 -90.51 -0.18 -1.83 16 14 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 15 C -0.12 -1.42 4.85 -26.69 -0.13 -1.55 16 16 C -0.13 -1.39 6.08 -26.60 -0.16 -1.55 16 17 C 0.08 0.86 5.39 -3.71 -0.02 0.84 16 18 N -0.59 -8.90 2.97 -174.29 -0.52 -9.42 16 19 C 0.59 9.87 7.57 -12.81 -0.10 9.77 16 20 O -0.53 -11.06 15.75 5.21 0.08 -10.98 16 21 C -0.07 -0.97 6.49 -82.35 -0.53 -1.50 16 22 C 0.02 0.20 9.55 -17.36 -0.17 0.04 16 23 N -0.49 -6.46 11.20 -10.36 -0.12 -6.57 16 24 C 0.22 2.57 7.63 -155.33 -1.19 1.39 16 25 N -0.42 -5.34 3.15 -109.76 -0.35 -5.69 16 26 C 0.10 1.10 6.17 -3.94 -0.02 1.08 16 27 C -0.14 -0.93 5.95 -26.52 -0.16 -1.09 16 28 C -0.13 -0.74 5.96 -26.46 -0.16 -0.90 16 29 C -0.03 -0.25 6.33 -27.49 -0.17 -0.42 16 30 C 0.13 2.18 5.47 -3.72 -0.02 2.16 16 31 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.04 0.57 6.40 -51.93 -0.33 0.24 16 34 H 0.38 10.40 7.62 -40.82 -0.31 10.08 16 35 H 0.25 7.59 8.31 -40.82 -0.34 7.25 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.07 0.83 6.36 -51.93 -0.33 0.49 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.10 1.04 3.61 -51.93 -0.19 0.85 16 41 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.19 1.88 6.00 -52.49 -0.31 1.57 16 43 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.10 1.18 8.13 -51.93 -0.42 0.76 16 45 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.08 0.51 8.12 -51.93 -0.42 0.09 16 47 H 0.07 0.47 8.12 -51.93 -0.42 0.04 16 48 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 49 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 50 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 51 H 0.11 2.36 6.51 -51.93 -0.34 2.03 16 52 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 LS Contribution 398.92 15.07 6.01 6.01 Total: -1.00 -34.61 398.92 -11.05 -45.66 By element: Atomic # 1 Polarization: 17.94 SS G_CDS: -8.54 Total: 9.40 kcal Atomic # 6 Polarization: 3.07 SS G_CDS: -3.08 Total: -0.01 kcal Atomic # 7 Polarization: -67.30 SS G_CDS: -0.50 Total: -67.80 kcal Atomic # 8 Polarization: -11.06 SS G_CDS: 0.08 Total: -10.98 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.02 Total: 17.71 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -34.61 -11.05 -45.66 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268174542.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.450 kcal (2) G-P(sol) polarization free energy of solvation -34.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.662 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds