Wall clock time and date at job start Wed Apr 1 2020 05:30:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.47565 * 2 1 4 4 N 1.46504 * 109.47161 * 120.00231 * 2 1 3 5 5 C 1.36933 * 119.99934 * 274.99907 * 4 2 1 6 6 H 1.08006 * 119.99812 * 359.97438 * 5 4 2 7 7 C 1.38811 * 120.00008 * 180.02562 * 5 4 2 8 8 N 1.31621 * 120.00242 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99927 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47457 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47489 * 119.99640 * 9 7 5 12 12 H 1.48504 * 109.47160 * 239.99592 * 9 7 5 13 13 C 1.53002 * 109.46926 * 240.00017 * 2 1 3 14 14 H 1.09000 * 109.52585 * 299.91763 * 13 2 1 15 15 C 1.53038 * 109.49764 * 59.99915 * 13 2 1 16 16 C 1.53047 * 109.52741 * 181.30759 * 15 13 2 17 17 C 1.53198 * 109.31163 * 298.64181 * 16 15 13 18 18 N 1.46921 * 108.77336 * 54.63612 * 17 16 15 19 19 C 1.34778 * 120.63276 * 126.36850 * 18 17 16 20 20 O 1.21676 * 120.00281 * 181.13243 * 19 18 17 21 21 C 1.46770 * 119.99576 * 1.12919 * 19 18 17 22 22 C 1.36824 * 126.91161 * 28.24013 * 21 19 18 23 23 N 1.33458 * 107.83180 * 179.81743 * 22 21 19 24 24 C 1.30547 * 109.68545 * 0.42472 * 23 22 21 25 25 N 1.34871 * 108.99219 * 359.76609 * 24 23 22 26 26 C 1.46440 * 124.99817 * 179.90264 * 25 24 23 27 27 C 1.53260 * 108.81672 * 342.95123 * 26 25 24 28 28 C 1.53157 * 109.44624 * 50.22010 * 27 26 25 29 29 C 1.51117 * 127.09307 * 179.77756 * 24 23 22 30 30 C 1.46928 * 118.74172 * 306.38643 * 18 17 16 31 31 H 1.09003 * 109.47083 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47271 * 299.99730 * 1 2 3 33 33 H 1.08999 * 109.47440 * 60.00299 * 1 2 3 34 34 H 0.97004 * 119.99823 * 95.00142 * 4 2 1 35 35 H 0.96990 * 120.00205 * 180.02562 * 8 7 5 36 36 H 1.09006 * 109.45867 * 61.29940 * 15 13 2 37 37 H 1.08997 * 109.46397 * 301.32384 * 15 13 2 38 38 H 1.09000 * 109.49300 * 58.59517 * 16 15 13 39 39 H 1.09001 * 109.49654 * 178.69103 * 16 15 13 40 40 H 1.08999 * 109.58156 * 174.42166 * 17 16 15 41 41 H 1.08992 * 109.58726 * 294.84586 * 17 16 15 42 42 H 1.07997 * 126.08410 * 359.96212 * 22 21 19 43 43 H 1.09001 * 109.58135 * 102.75068 * 26 25 24 44 44 H 1.09001 * 109.58330 * 223.14960 * 26 25 24 45 45 H 1.09005 * 109.47557 * 170.21201 * 27 26 25 46 46 H 1.09002 * 109.47670 * 290.22480 * 27 26 25 47 47 H 1.08997 * 109.50890 * 50.59338 * 28 27 26 48 48 H 1.08995 * 109.51122 * 170.73920 * 28 27 26 49 49 H 1.09003 * 109.70736 * 44.27291 * 29 24 23 50 50 H 1.09001 * 109.70932 * 283.64436 * 29 24 23 51 51 H 1.09001 * 109.58681 * 173.39424 * 30 18 17 52 52 H 1.08997 * 109.58722 * 293.82800 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.1491 -0.0076 2.3757 6 1 1.8926 1.0405 2.4241 7 6 2.6123 -0.6619 3.5090 8 7 2.9253 -1.9389 3.4499 9 14 2.7900 0.2698 5.1182 10 1 2.3752 1.6820 4.9212 11 1 1.9298 -0.3595 6.1523 12 1 4.2070 0.2278 5.5607 13 6 2.0399 -0.7213 -1.2493 14 1 1.6782 -1.7495 -1.2494 15 6 1.5301 -0.0003 -2.4992 16 6 2.0127 -0.7400 -3.7491 17 6 3.5444 -0.7370 -3.7798 18 7 4.0437 -1.2970 -2.5166 19 6 4.9180 -2.3228 -2.5182 20 8 5.3082 -2.7913 -1.4652 21 6 5.3992 -2.8747 -3.7902 22 6 5.5232 -2.2102 -4.9798 23 7 5.9986 -3.0717 -5.8815 24 6 6.1705 -4.2402 -5.3254 25 7 5.8109 -4.1658 -4.0276 26 6 5.8622 -5.2784 -3.0768 27 6 5.9670 -6.5924 -3.8586 28 6 7.0963 -6.4849 -4.8876 29 6 6.6854 -5.4975 -5.9869 30 6 3.5716 -0.7180 -1.2514 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 2.2490 -1.6319 1.1525 35 1 3.2487 -2.3962 4.2418 36 1 1.9124 1.0204 -2.5110 37 1 0.4403 0.0202 -2.4876 38 1 1.6513 -1.7681 -3.7256 39 1 1.6301 -0.2395 -4.6386 40 1 3.8943 -1.3461 -4.6132 41 1 3.9056 0.2849 -3.8944 42 1 5.2818 -1.1726 -5.1569 43 1 6.7333 -5.1671 -2.4310 44 1 4.9553 -5.2844 -2.4721 45 1 6.1800 -7.4095 -3.1692 46 1 5.0250 -6.7861 -4.3717 47 1 8.0023 -6.1282 -4.3977 48 1 7.2815 -7.4643 -5.3285 49 1 7.5488 -5.2589 -6.6080 50 1 5.9000 -5.9376 -6.6015 51 1 3.9395 -1.3146 -0.4167 52 1 3.9350 0.3056 -1.1600 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268174542.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:30:01 Heat of formation + Delta-G solvation = 14.879228 kcal Electronic energy + Delta-G solvation = -31679.402114 eV Core-core repulsion = 27678.919207 eV Total energy + Delta-G solvation = -4000.482906 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -43.62281 -41.12120 -39.05963 -37.74092 -36.96071 -34.72044 -34.24727 -33.18122 -31.95421 -30.88115 -30.31304 -29.29768 -26.87943 -26.04399 -25.41556 -24.31634 -23.68302 -22.97629 -22.20156 -21.15512 -20.62001 -19.80382 -19.16373 -18.31615 -17.70548 -17.11715 -16.86581 -16.62039 -16.32305 -15.80895 -15.67875 -15.54716 -15.21884 -15.17121 -15.09892 -14.94754 -14.68577 -14.30909 -14.21517 -14.12070 -13.88641 -13.79207 -13.29806 -13.03595 -12.92741 -12.81996 -12.53077 -12.35368 -12.25105 -12.11812 -12.09148 -11.99972 -11.98592 -11.78767 -11.67122 -11.51216 -11.30549 -11.19147 -10.99130 -10.90972 -10.75064 -9.78832 -9.43635 -8.99524 -7.92567 -5.20919 0.24779 1.29443 1.44033 1.45451 1.55052 1.69824 2.04679 2.12174 2.55548 3.18914 3.35194 3.41115 3.51571 3.66383 3.69586 3.74513 3.85052 3.92896 4.03770 4.11382 4.17463 4.22414 4.26131 4.28928 4.37099 4.42503 4.45713 4.58278 4.63627 4.74604 4.77243 4.83807 4.85395 4.90012 4.91150 4.91856 5.01797 5.03596 5.04736 5.12284 5.18628 5.23367 5.27506 5.35764 5.38303 5.47901 5.49487 5.55542 5.63188 5.99396 6.27816 6.28871 6.78560 7.00307 7.33767 8.11552 8.33264 9.31254 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013107 B = 0.002908 C = 0.002522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2135.764765 B = 9625.579062 C =11100.959530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.173 3.827 3 H 0.051 0.949 4 N -0.738 5.738 5 C -0.229 4.229 6 H 0.079 0.921 7 C -0.082 4.082 8 N -0.972 5.972 9 Si 0.969 3.031 10 H -0.262 1.262 11 H -0.295 1.295 12 H -0.299 1.299 13 C -0.088 4.088 14 H 0.046 0.954 15 C -0.109 4.109 16 C -0.125 4.125 17 C 0.074 3.926 18 N -0.590 5.590 19 C 0.579 3.421 20 O -0.590 6.590 21 C -0.103 4.103 22 C 0.034 3.966 23 N -0.513 5.513 24 C 0.231 3.769 25 N -0.428 5.428 26 C 0.098 3.902 27 C -0.127 4.127 28 C -0.121 4.121 29 C -0.035 4.035 30 C 0.133 3.867 31 H 0.034 0.966 32 H 0.035 0.965 33 H 0.082 0.918 34 H 0.367 0.633 35 H 0.247 0.753 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.051 0.949 39 H 0.113 0.887 40 H 0.115 0.885 41 H 0.099 0.901 42 H 0.213 0.787 43 H 0.079 0.921 44 H 0.071 0.929 45 H 0.111 0.889 46 H 0.082 0.918 47 H 0.065 0.935 48 H 0.118 0.882 49 H 0.113 0.887 50 H 0.113 0.887 51 H 0.051 0.949 52 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.542 -5.102 -26.520 27.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.065 3.935 3 H 0.069 0.931 4 N -0.377 5.377 5 C -0.361 4.361 6 H 0.097 0.903 7 C -0.274 4.274 8 N -0.624 5.624 9 Si 0.799 3.201 10 H -0.186 1.186 11 H -0.223 1.223 12 H -0.226 1.226 13 C -0.109 4.109 14 H 0.065 0.935 15 C -0.147 4.147 16 C -0.163 4.163 17 C -0.047 4.047 18 N -0.321 5.321 19 C 0.368 3.632 20 O -0.471 6.471 21 C -0.220 4.220 22 C -0.120 4.120 23 N -0.231 5.231 24 C -0.031 4.031 25 N -0.109 5.109 26 C -0.024 4.024 27 C -0.165 4.165 28 C -0.159 4.159 29 C -0.074 4.074 30 C 0.011 3.989 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.100 0.900 34 H 0.198 0.802 35 H 0.056 0.944 36 H 0.099 0.901 37 H 0.102 0.898 38 H 0.070 0.930 39 H 0.131 0.869 40 H 0.132 0.868 41 H 0.117 0.883 42 H 0.229 0.771 43 H 0.098 0.902 44 H 0.090 0.910 45 H 0.129 0.871 46 H 0.101 0.899 47 H 0.084 0.916 48 H 0.136 0.864 49 H 0.131 0.869 50 H 0.131 0.869 51 H 0.070 0.930 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.889 -5.116 -26.521 27.289 hybrid contribution 0.036 -0.154 2.925 2.929 sum 3.926 -5.270 -23.596 24.494 Atomic orbital electron populations 1.22321 0.97355 1.00518 1.01127 1.20478 0.93031 0.95081 0.84952 0.93144 1.42708 1.78355 1.10131 1.06545 1.19652 1.34122 0.94122 0.88184 0.90343 1.25562 1.03407 0.96839 1.01568 1.69860 1.53021 1.10426 1.29074 0.85118 0.76519 0.78396 0.80059 1.18602 1.22273 1.22626 1.21596 0.93367 0.99520 0.96370 0.93497 1.21637 1.01827 0.99450 0.91739 1.21903 0.94065 1.01009 0.99342 1.22833 0.95776 1.01038 0.85031 1.47911 1.42328 1.32816 1.09004 1.17301 0.79062 0.80044 0.86793 1.90851 1.59734 1.61986 1.34560 1.20540 1.16383 0.88016 0.97077 1.23346 1.00977 1.01024 0.86643 1.70016 1.20395 1.00257 1.32456 1.24391 1.00159 0.97741 0.80841 1.45362 1.45866 1.08501 1.11140 1.22201 1.03388 0.85404 0.91357 1.21989 1.01243 0.94021 0.99246 1.21725 0.97478 1.01314 0.95382 1.20584 1.02952 0.86289 0.97552 1.21423 0.94873 0.97977 0.84650 0.94666 0.94609 0.89963 0.80192 0.94429 0.90082 0.89807 0.93010 0.86876 0.86783 0.88317 0.77097 0.90223 0.91045 0.87066 0.89930 0.91642 0.86390 0.86909 0.86902 0.92990 0.90985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.26 9.14 71.98 0.66 -4.60 16 2 C 0.17 6.69 2.47 44.99 0.11 6.80 16 3 H 0.05 1.93 8.08 -2.39 -0.02 1.91 16 4 N -0.74 -38.26 4.52 -322.94 -1.46 -39.72 16 5 C -0.23 -12.98 9.93 84.03 0.83 -12.14 16 6 H 0.08 4.23 7.83 -2.91 -0.02 4.21 16 7 C -0.08 -4.91 5.50 84.86 0.47 -4.44 16 8 N -0.97 -62.97 13.06 21.65 0.28 -62.68 16 9 Si 0.97 48.04 29.55 68.60 2.03 50.07 16 10 H -0.26 -11.99 7.11 99.48 0.71 -11.28 16 11 H -0.30 -14.63 7.11 99.48 0.71 -13.92 16 12 H -0.30 -14.98 7.11 99.48 0.71 -14.27 16 13 C -0.09 -2.89 1.97 -10.72 -0.02 -2.91 16 14 H 0.05 1.73 8.14 -2.39 -0.02 1.72 16 15 C -0.11 -2.35 4.85 30.62 0.15 -2.20 16 16 C -0.13 -2.21 6.08 30.68 0.19 -2.02 16 17 C 0.07 1.44 5.39 86.37 0.47 1.91 16 18 N -0.59 -18.10 2.97 -823.56 -2.45 -20.55 16 19 C 0.58 20.86 7.57 86.47 0.65 21.52 16 20 O -0.59 -27.25 15.75 -4.27 -0.07 -27.32 16 21 C -0.10 -3.04 6.49 40.14 0.26 -2.78 16 22 C 0.03 0.81 9.55 84.11 0.80 1.61 16 23 N -0.51 -12.57 11.20 -186.68 -2.09 -14.66 16 24 C 0.23 5.04 7.63 138.30 1.06 6.10 16 25 N -0.43 -11.14 3.15 -501.18 -1.58 -12.73 16 26 C 0.10 2.28 6.17 86.48 0.53 2.81 16 27 C -0.13 -1.61 5.95 30.73 0.18 -1.43 16 28 C -0.12 -1.10 5.96 30.77 0.18 -0.92 16 29 C -0.04 -0.41 6.33 30.11 0.19 -0.22 16 30 C 0.13 4.86 5.47 86.36 0.47 5.34 16 31 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.08 2.11 6.40 -2.39 -0.02 2.09 16 34 H 0.37 21.31 7.62 -92.71 -0.71 20.60 16 35 H 0.25 15.57 8.31 -92.72 -0.77 14.80 16 36 H 0.08 1.55 8.14 -2.38 -0.02 1.53 16 37 H 0.08 1.63 6.36 -2.39 -0.02 1.61 16 38 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.11 2.02 3.61 -2.39 -0.01 2.02 16 41 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 42 H 0.21 3.71 6.00 -2.91 -0.02 3.70 16 43 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 44 H 0.07 1.98 8.13 -2.39 -0.02 1.96 16 45 H 0.11 1.02 8.14 -2.38 -0.02 1.00 16 46 H 0.08 0.97 8.12 -2.39 -0.02 0.95 16 47 H 0.06 0.72 8.12 -2.39 -0.02 0.70 16 48 H 0.12 0.38 8.14 -2.39 -0.02 0.36 16 49 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 50 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 51 H 0.05 2.50 6.51 -2.39 -0.02 2.49 16 52 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 Total: -1.00 -82.39 398.92 2.07 -80.32 By element: Atomic # 1 Polarization: 34.62 SS G_CDS: 0.22 Total: 34.84 kcal Atomic # 6 Polarization: 5.24 SS G_CDS: 7.19 Total: 12.43 kcal Atomic # 7 Polarization: -143.04 SS G_CDS: -7.30 Total: -150.34 kcal Atomic # 8 Polarization: -27.25 SS G_CDS: -0.07 Total: -27.32 kcal Atomic # 14 Polarization: 48.04 SS G_CDS: 2.03 Total: 50.07 kcal Total: -82.39 2.07 -80.32 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268174542.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.204 kcal (2) G-P(sol) polarization free energy of solvation -82.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds