Wall clock time and date at job start Wed Apr 1 2020 05:30:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.46958 * 2 1 4 4 N 1.46493 * 109.47297 * 239.99888 * 2 1 3 5 5 C 1.36942 * 120.00266 * 85.00104 * 4 2 1 6 6 H 1.07999 * 119.99185 * 0.02562 * 5 4 2 7 7 C 1.38805 * 120.00019 * 179.97438 * 5 4 2 8 8 N 1.31616 * 120.00258 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99871 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47134 * 89.99935 * 9 7 5 11 11 H 1.48505 * 109.47239 * 210.00101 * 9 7 5 12 12 H 1.48501 * 109.47168 * 330.00262 * 9 7 5 13 13 C 1.53006 * 109.46847 * 119.99864 * 2 1 3 14 14 H 1.09001 * 109.49282 * 60.06424 * 13 2 1 15 15 C 1.53040 * 109.49687 * 300.00166 * 13 2 1 16 16 C 1.53044 * 109.53709 * 178.68176 * 15 13 2 17 17 C 1.53194 * 109.31225 * 61.36454 * 16 15 13 18 18 N 1.46934 * 108.77383 * 305.36657 * 17 16 15 19 19 C 1.34777 * 120.62579 * 233.58563 * 18 17 16 20 20 O 1.21680 * 119.99287 * 178.88958 * 19 18 17 21 21 C 1.46763 * 120.00577 * 358.89223 * 19 18 17 22 22 C 1.36833 * 126.90871 * 331.77265 * 21 19 18 23 23 N 1.33455 * 107.83611 * 179.97438 * 22 21 19 24 24 C 1.30560 * 109.68234 * 359.97438 * 23 22 21 25 25 N 1.34869 * 108.98533 * 0.03407 * 24 23 22 26 26 C 1.46451 * 124.99193 * 179.97438 * 25 24 23 27 27 C 1.53266 * 108.81283 * 342.93063 * 26 25 24 28 28 C 1.53165 * 109.44001 * 50.23663 * 27 26 25 29 29 C 1.51109 * 127.08815 * 180.30242 * 24 23 22 30 30 C 1.46920 * 118.74088 * 53.85972 * 18 17 16 31 31 H 1.09006 * 109.46658 * 59.99961 * 1 2 3 32 32 H 1.08992 * 109.47285 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47172 * 300.00571 * 1 2 3 34 34 H 0.97001 * 120.00122 * 265.00760 * 4 2 1 35 35 H 0.97000 * 119.99806 * 179.97438 * 8 7 5 36 36 H 1.09002 * 109.46075 * 58.66064 * 15 13 2 37 37 H 1.08999 * 109.46240 * 298.70098 * 15 13 2 38 38 H 1.08997 * 109.49702 * 301.41141 * 16 15 13 39 39 H 1.08999 * 109.49566 * 181.31331 * 16 15 13 40 40 H 1.08994 * 109.58796 * 185.57782 * 17 16 15 41 41 H 1.09004 * 109.70503 * 65.22077 * 17 16 15 42 42 H 1.08003 * 126.08471 * 359.97438 * 22 21 19 43 43 H 1.08997 * 109.57913 * 102.73063 * 26 25 24 44 44 H 1.08998 * 109.58392 * 222.99949 * 26 25 24 45 45 H 1.09002 * 109.47642 * 170.22368 * 27 26 25 46 46 H 1.08994 * 109.47615 * 290.24695 * 27 26 25 47 47 H 1.09001 * 109.50978 * 50.59122 * 28 27 26 48 48 H 1.08995 * 109.51060 * 170.73790 * 28 27 26 49 49 H 1.09003 * 109.71060 * 283.37117 * 29 24 23 50 50 H 1.09000 * 109.71115 * 43.99943 * 29 24 23 51 51 H 1.09003 * 109.59025 * 65.92577 * 30 18 17 52 52 H 1.08996 * 109.59114 * 186.35287 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1492 -0.0075 -2.3757 6 1 1.8927 1.0405 -2.4241 7 6 2.6125 -0.6618 -3.5089 8 7 2.9255 -1.9388 -3.4498 9 14 2.7902 0.2699 -5.1182 10 1 4.1521 0.8560 -5.2030 11 1 2.5806 -0.6619 -6.2554 12 1 1.7794 1.3562 -5.1755 13 6 2.0400 -0.7213 1.2493 14 1 1.6777 -1.7493 1.2491 15 6 1.5301 -0.0003 2.4993 16 6 2.0124 -0.7399 3.7493 17 6 3.5440 -0.7370 3.7804 18 7 4.0437 -1.2971 2.5172 19 6 4.9186 -2.3223 2.5193 20 8 5.3094 -2.7906 1.4664 21 6 5.3999 -2.8739 3.7913 22 6 5.5229 -2.2093 4.9811 23 7 5.9944 -3.0715 5.8841 24 6 6.1728 -4.2385 5.3266 25 7 5.8174 -4.1632 4.0277 26 6 5.8787 -5.2733 3.0745 27 6 6.7846 -6.3682 3.6486 28 6 6.3527 -6.6871 5.0831 29 6 6.6847 -5.4963 5.9893 30 6 3.5762 -0.7145 1.2521 31 1 -0.3633 0.5139 -0.8901 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3633 0.5139 0.8899 34 1 2.2490 -1.6318 -1.1525 35 1 3.2488 -2.3960 -4.2418 36 1 0.4403 0.0205 2.4874 37 1 1.9124 1.0204 2.5111 38 1 1.6509 -1.7679 3.7259 39 1 1.6295 -0.2392 4.6386 40 1 3.8938 -1.3460 4.6139 41 1 3.9073 0.2842 3.8962 42 1 5.2814 -1.1716 5.1580 43 1 4.8776 -5.6738 2.9153 44 1 6.2855 -4.9194 2.1272 45 1 6.7023 -7.2662 3.0362 46 1 7.8180 -6.0218 3.6488 47 1 5.2787 -6.8716 5.1073 48 1 6.8828 -7.5721 5.4347 49 1 7.7649 -5.4296 6.1197 50 1 6.2039 -5.6225 6.9594 51 1 3.9399 0.3093 1.1648 52 1 3.9471 -1.3087 0.4170 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268174543.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:30:09 Heat of formation + Delta-G solvation = 36.635821 kcal Electronic energy + Delta-G solvation = -31673.564572 eV Core-core repulsion = 27674.025103 eV Total energy + Delta-G solvation = -3999.539470 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.66321 -39.87232 -37.66525 -36.96971 -35.44671 -33.41781 -33.01027 -31.74679 -30.68359 -29.81723 -28.96735 -27.95121 -25.66555 -24.86478 -23.94830 -23.03542 -22.65957 -22.09869 -21.01599 -19.78436 -19.46346 -18.90153 -17.36631 -16.97019 -16.46646 -16.29084 -15.64781 -15.06479 -14.93132 -14.81486 -14.57439 -14.44917 -14.40596 -14.09071 -13.77948 -13.67216 -13.46109 -13.18570 -13.02362 -12.76593 -12.61884 -12.31147 -12.17707 -11.92348 -11.61586 -11.52265 -11.43607 -11.30320 -11.02727 -10.92762 -10.83134 -10.69732 -10.54739 -10.38552 -10.25270 -10.13353 -9.85567 -9.80650 -9.64642 -9.52009 -8.87504 -8.59890 -8.37271 -6.90437 -5.70232 -2.99368 1.30469 2.29603 2.69247 3.16458 3.29196 3.46746 3.51563 3.53309 3.94771 4.19099 4.24795 4.34504 4.50777 4.61894 4.80530 4.85304 4.93945 4.97403 5.01792 5.06712 5.16447 5.21721 5.26156 5.32367 5.39718 5.40284 5.44670 5.52921 5.54416 5.61967 5.71259 5.72889 5.81470 5.83441 5.95327 6.01235 6.07489 6.15790 6.22480 6.24000 6.35725 6.44503 6.49291 6.53914 6.72691 6.75676 6.88359 6.93703 7.12273 7.49509 7.74889 7.76977 8.25235 8.47413 9.58591 10.16456 10.50818 11.52006 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013080 B = 0.002911 C = 0.002518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2140.141352 B = 9615.867081 C =11115.750131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.180 3.820 3 H 0.047 0.953 4 N -0.724 5.724 5 C -0.238 4.238 6 H 0.069 0.931 7 C -0.013 4.013 8 N -0.930 5.930 9 Si 0.904 3.096 10 H -0.290 1.290 11 H -0.292 1.292 12 H -0.283 1.283 13 C -0.102 4.102 14 H 0.069 0.931 15 C -0.116 4.116 16 C -0.132 4.132 17 C 0.079 3.921 18 N -0.594 5.594 19 C 0.586 3.414 20 O -0.532 6.532 21 C -0.068 4.068 22 C 0.016 3.984 23 N -0.492 5.492 24 C 0.222 3.778 25 N -0.419 5.419 26 C 0.096 3.904 27 C -0.135 4.135 28 C -0.128 4.128 29 C -0.034 4.034 30 C 0.125 3.875 31 H 0.052 0.948 32 H 0.044 0.956 33 H 0.039 0.961 34 H 0.384 0.616 35 H 0.254 0.746 36 H 0.069 0.931 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.073 0.927 40 H 0.103 0.897 41 H 0.072 0.928 42 H 0.188 0.812 43 H 0.088 0.912 44 H 0.109 0.891 45 H 0.093 0.907 46 H 0.077 0.923 47 H 0.071 0.929 48 H 0.084 0.916 49 H 0.092 0.908 50 H 0.098 0.902 51 H 0.068 0.932 52 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.270 -6.100 22.781 23.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.070 3.930 3 H 0.065 0.935 4 N -0.366 5.366 5 C -0.369 4.369 6 H 0.087 0.913 7 C -0.209 4.209 8 N -0.578 5.578 9 Si 0.735 3.265 10 H -0.218 1.218 11 H -0.219 1.219 12 H -0.209 1.209 13 C -0.122 4.122 14 H 0.087 0.913 15 C -0.154 4.154 16 C -0.170 4.170 17 C -0.044 4.044 18 N -0.327 5.327 19 C 0.373 3.627 20 O -0.409 6.409 21 C -0.186 4.186 22 C -0.137 4.137 23 N -0.210 5.210 24 C -0.040 4.040 25 N -0.099 5.099 26 C -0.026 4.026 27 C -0.173 4.173 28 C -0.166 4.166 29 C -0.073 4.073 30 C 0.004 3.996 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.058 0.942 34 H 0.218 0.782 35 H 0.064 0.936 36 H 0.088 0.912 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.091 0.909 40 H 0.121 0.879 41 H 0.090 0.910 42 H 0.204 0.796 43 H 0.106 0.894 44 H 0.127 0.873 45 H 0.111 0.889 46 H 0.095 0.905 47 H 0.090 0.910 48 H 0.103 0.897 49 H 0.110 0.890 50 H 0.116 0.884 51 H 0.086 0.914 52 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 4.656 -6.192 22.708 23.994 hybrid contribution -0.149 0.153 -1.885 1.897 sum 4.507 -6.039 20.824 22.145 Atomic orbital electron populations 1.22479 0.99306 1.00772 0.99899 1.20176 0.91829 0.95274 0.85759 0.93467 1.42454 1.78080 1.10732 1.05306 1.19192 1.36583 0.93762 0.87345 0.91289 1.24727 1.02241 0.95931 0.97975 1.69668 1.50730 1.08597 1.28780 0.86243 0.77742 0.78582 0.83924 1.21785 1.21889 1.20866 1.21837 0.94463 1.00487 0.95405 0.91258 1.21645 1.01058 0.99095 0.93555 1.21900 0.94839 1.01457 0.98794 1.22481 0.95140 0.99725 0.87016 1.47859 1.43073 1.33358 1.08366 1.16836 0.79282 0.80103 0.86450 1.90875 1.57508 1.60178 1.32381 1.20736 1.13576 0.86553 0.97706 1.22940 1.02872 1.00114 0.87726 1.69936 1.19208 0.99628 1.32267 1.23417 1.02568 0.96706 0.81323 1.45154 1.45744 1.08803 1.10221 1.22214 1.02261 0.85258 0.92843 1.21941 0.99868 0.98473 0.96998 1.21697 1.02576 0.97962 0.94335 1.20255 1.01808 0.86704 0.98534 1.21850 0.93963 0.98910 0.84863 0.92880 0.93664 0.94250 0.78226 0.93588 0.91210 0.91775 0.91765 0.90862 0.87927 0.91006 0.79559 0.89420 0.87310 0.88855 0.90475 0.90997 0.89718 0.89020 0.88375 0.91413 0.87387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.92 9.14 37.16 0.34 -2.58 16 2 C 0.18 3.48 2.47 -67.93 -0.17 3.31 16 3 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 4 N -0.72 -18.01 4.52 -53.43 -0.24 -18.25 16 5 C -0.24 -6.58 9.93 -15.06 -0.15 -6.73 16 6 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 7 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 8 N -0.93 -28.60 13.06 55.49 0.72 -27.88 16 9 Si 0.90 22.73 29.55 -169.99 -5.02 17.71 16 10 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 11 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 12 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 13 C -0.10 -1.65 1.99 -90.27 -0.18 -1.83 16 14 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 15 C -0.12 -1.42 4.85 -26.69 -0.13 -1.55 16 16 C -0.13 -1.38 6.08 -26.61 -0.16 -1.55 16 17 C 0.08 0.86 5.38 -3.71 -0.02 0.84 16 18 N -0.59 -8.90 2.97 -174.01 -0.52 -9.41 16 19 C 0.59 9.87 7.57 -12.82 -0.10 9.77 16 20 O -0.53 -11.04 15.09 5.21 0.08 -10.96 16 21 C -0.07 -0.97 6.49 -82.36 -0.53 -1.51 16 22 C 0.02 0.21 9.55 -17.35 -0.17 0.04 16 23 N -0.49 -6.47 11.20 -10.35 -0.12 -6.58 16 24 C 0.22 2.58 7.64 -155.32 -1.19 1.39 16 25 N -0.42 -5.35 3.15 -109.76 -0.35 -5.69 16 26 C 0.10 1.04 6.51 -3.93 -0.03 1.01 16 27 C -0.14 -0.95 5.95 -26.51 -0.16 -1.10 16 28 C -0.13 -0.74 5.95 -26.50 -0.16 -0.89 16 29 C -0.03 -0.25 6.33 -27.54 -0.17 -0.42 16 30 C 0.13 2.18 5.50 -3.49 -0.02 2.16 16 31 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.04 0.57 6.40 -51.93 -0.33 0.24 16 34 H 0.38 10.40 7.64 -40.82 -0.31 10.09 16 35 H 0.25 7.62 8.31 -40.82 -0.34 7.28 16 36 H 0.07 0.83 6.36 -51.93 -0.33 0.50 16 37 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.10 1.04 3.61 -51.93 -0.19 0.85 16 41 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.19 1.88 6.00 -52.48 -0.32 1.56 16 43 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 44 H 0.11 1.40 7.15 -51.93 -0.37 1.03 16 45 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.08 0.55 8.12 -51.93 -0.42 0.13 16 47 H 0.07 0.44 8.12 -51.93 -0.42 0.02 16 48 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 49 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 50 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 51 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 52 H 0.11 2.36 6.53 -51.93 -0.34 2.03 16 LS Contribution 397.69 15.07 5.99 5.99 Total: -1.00 -34.52 397.69 -11.02 -45.54 By element: Atomic # 1 Polarization: 18.13 SS G_CDS: -8.49 Total: 9.64 kcal Atomic # 6 Polarization: 2.98 SS G_CDS: -3.08 Total: -0.10 kcal Atomic # 7 Polarization: -67.32 SS G_CDS: -0.50 Total: -67.82 kcal Atomic # 8 Polarization: -11.04 SS G_CDS: 0.08 Total: -10.96 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.02 Total: 17.71 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -34.52 -11.02 -45.54 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268174543.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.176 kcal (2) G-P(sol) polarization free energy of solvation -34.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.540 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds