Wall clock time and date at job start Wed Apr 1 2020 05:30:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.46958 * 2 1 4 4 N 1.46493 * 109.47297 * 239.99888 * 2 1 3 5 5 C 1.36942 * 120.00266 * 85.00104 * 4 2 1 6 6 H 1.07999 * 119.99185 * 0.02562 * 5 4 2 7 7 C 1.38805 * 120.00019 * 179.97438 * 5 4 2 8 8 N 1.31616 * 120.00258 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99871 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47134 * 89.99935 * 9 7 5 11 11 H 1.48505 * 109.47239 * 210.00101 * 9 7 5 12 12 H 1.48501 * 109.47168 * 330.00262 * 9 7 5 13 13 C 1.53006 * 109.46847 * 119.99864 * 2 1 3 14 14 H 1.09001 * 109.49282 * 60.06424 * 13 2 1 15 15 C 1.53040 * 109.49687 * 300.00166 * 13 2 1 16 16 C 1.53044 * 109.53709 * 178.68176 * 15 13 2 17 17 C 1.53194 * 109.31225 * 61.36454 * 16 15 13 18 18 N 1.46934 * 108.77383 * 305.36657 * 17 16 15 19 19 C 1.34777 * 120.62579 * 233.58563 * 18 17 16 20 20 O 1.21680 * 119.99287 * 178.88958 * 19 18 17 21 21 C 1.46763 * 120.00577 * 358.89223 * 19 18 17 22 22 C 1.36833 * 126.90871 * 331.77265 * 21 19 18 23 23 N 1.33455 * 107.83611 * 179.97438 * 22 21 19 24 24 C 1.30560 * 109.68234 * 359.97438 * 23 22 21 25 25 N 1.34869 * 108.98533 * 0.03407 * 24 23 22 26 26 C 1.46451 * 124.99193 * 179.97438 * 25 24 23 27 27 C 1.53266 * 108.81283 * 342.93063 * 26 25 24 28 28 C 1.53165 * 109.44001 * 50.23663 * 27 26 25 29 29 C 1.51109 * 127.08815 * 180.30242 * 24 23 22 30 30 C 1.46920 * 118.74088 * 53.85972 * 18 17 16 31 31 H 1.09006 * 109.46658 * 59.99961 * 1 2 3 32 32 H 1.08992 * 109.47285 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47172 * 300.00571 * 1 2 3 34 34 H 0.97001 * 120.00122 * 265.00760 * 4 2 1 35 35 H 0.97000 * 119.99806 * 179.97438 * 8 7 5 36 36 H 1.09002 * 109.46075 * 58.66064 * 15 13 2 37 37 H 1.08999 * 109.46240 * 298.70098 * 15 13 2 38 38 H 1.08997 * 109.49702 * 301.41141 * 16 15 13 39 39 H 1.08999 * 109.49566 * 181.31331 * 16 15 13 40 40 H 1.08994 * 109.58796 * 185.57782 * 17 16 15 41 41 H 1.09004 * 109.70503 * 65.22077 * 17 16 15 42 42 H 1.08003 * 126.08471 * 359.97438 * 22 21 19 43 43 H 1.08997 * 109.57913 * 102.73063 * 26 25 24 44 44 H 1.08998 * 109.58392 * 222.99949 * 26 25 24 45 45 H 1.09002 * 109.47642 * 170.22368 * 27 26 25 46 46 H 1.08994 * 109.47615 * 290.24695 * 27 26 25 47 47 H 1.09001 * 109.50978 * 50.59122 * 28 27 26 48 48 H 1.08995 * 109.51060 * 170.73790 * 28 27 26 49 49 H 1.09003 * 109.71060 * 283.37117 * 29 24 23 50 50 H 1.09000 * 109.71115 * 43.99943 * 29 24 23 51 51 H 1.09003 * 109.59025 * 65.92577 * 30 18 17 52 52 H 1.08996 * 109.59114 * 186.35287 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1492 -0.0075 -2.3757 6 1 1.8927 1.0405 -2.4241 7 6 2.6125 -0.6618 -3.5089 8 7 2.9255 -1.9388 -3.4498 9 14 2.7902 0.2699 -5.1182 10 1 4.1521 0.8560 -5.2030 11 1 2.5806 -0.6619 -6.2554 12 1 1.7794 1.3562 -5.1755 13 6 2.0400 -0.7213 1.2493 14 1 1.6777 -1.7493 1.2491 15 6 1.5301 -0.0003 2.4993 16 6 2.0124 -0.7399 3.7493 17 6 3.5440 -0.7370 3.7804 18 7 4.0437 -1.2971 2.5172 19 6 4.9186 -2.3223 2.5193 20 8 5.3094 -2.7906 1.4664 21 6 5.3999 -2.8739 3.7913 22 6 5.5229 -2.2093 4.9811 23 7 5.9944 -3.0715 5.8841 24 6 6.1728 -4.2385 5.3266 25 7 5.8174 -4.1632 4.0277 26 6 5.8787 -5.2733 3.0745 27 6 6.7846 -6.3682 3.6486 28 6 6.3527 -6.6871 5.0831 29 6 6.6847 -5.4963 5.9893 30 6 3.5762 -0.7145 1.2521 31 1 -0.3633 0.5139 -0.8901 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3633 0.5139 0.8899 34 1 2.2490 -1.6318 -1.1525 35 1 3.2488 -2.3960 -4.2418 36 1 0.4403 0.0205 2.4874 37 1 1.9124 1.0204 2.5111 38 1 1.6509 -1.7679 3.7259 39 1 1.6295 -0.2392 4.6386 40 1 3.8938 -1.3460 4.6139 41 1 3.9073 0.2842 3.8962 42 1 5.2814 -1.1716 5.1580 43 1 4.8776 -5.6738 2.9153 44 1 6.2855 -4.9194 2.1272 45 1 6.7023 -7.2662 3.0362 46 1 7.8180 -6.0218 3.6488 47 1 5.2787 -6.8716 5.1073 48 1 6.8828 -7.5721 5.4347 49 1 7.7649 -5.4296 6.1197 50 1 6.2039 -5.6225 6.9594 51 1 3.9399 0.3093 1.1648 52 1 3.9471 -1.3087 0.4170 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268174543.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:30:08 Heat of formation + Delta-G solvation = 14.834817 kcal Electronic energy + Delta-G solvation = -31674.509935 eV Core-core repulsion = 27674.025103 eV Total energy + Delta-G solvation = -4000.484832 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -43.62049 -41.10973 -39.04945 -37.74098 -36.95597 -34.71574 -34.24442 -33.18076 -31.94288 -30.87633 -30.31315 -29.28851 -26.87188 -26.03887 -25.41540 -24.31581 -23.68220 -22.97711 -22.20695 -21.15583 -20.61459 -19.80366 -19.15901 -18.32068 -17.56498 -17.25954 -16.87097 -16.65872 -16.22381 -15.79949 -15.63079 -15.50960 -15.32349 -15.19170 -15.13423 -14.96246 -14.62860 -14.30832 -14.20221 -14.09592 -13.89601 -13.78235 -13.28708 -13.03941 -12.92851 -12.77983 -12.53424 -12.37175 -12.29433 -12.14441 -12.08478 -12.02698 -11.96319 -11.77528 -11.66051 -11.47769 -11.30428 -11.19315 -10.98435 -10.91637 -10.72666 -9.79035 -9.43324 -8.99286 -7.92258 -5.20655 0.24501 1.30077 1.44043 1.46440 1.54345 1.69998 2.04932 2.12625 2.55798 3.19270 3.35245 3.41241 3.51808 3.67410 3.71110 3.74929 3.85169 3.92690 4.03023 4.11129 4.17632 4.21050 4.26140 4.28818 4.40692 4.43351 4.45818 4.58274 4.63753 4.74741 4.76961 4.83923 4.85483 4.90138 4.91146 4.91931 5.01823 5.04353 5.04893 5.12358 5.19053 5.23364 5.27631 5.35845 5.38432 5.48008 5.49459 5.55441 5.63264 5.99693 6.27953 6.29043 6.78769 7.00398 7.33988 8.11913 8.33589 9.31360 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013080 B = 0.002911 C = 0.002518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2140.141352 B = 9615.867081 C =11115.750131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.173 3.827 3 H 0.050 0.950 4 N -0.738 5.738 5 C -0.230 4.230 6 H 0.078 0.922 7 C -0.082 4.082 8 N -0.972 5.972 9 Si 0.970 3.030 10 H -0.290 1.290 11 H -0.299 1.299 12 H -0.266 1.266 13 C -0.088 4.088 14 H 0.047 0.953 15 C -0.109 4.109 16 C -0.125 4.125 17 C 0.074 3.926 18 N -0.590 5.590 19 C 0.579 3.421 20 O -0.590 6.590 21 C -0.103 4.103 22 C 0.034 3.966 23 N -0.513 5.513 24 C 0.231 3.769 25 N -0.427 5.427 26 C 0.092 3.908 27 C -0.128 4.128 28 C -0.120 4.120 29 C -0.036 4.036 30 C 0.133 3.867 31 H 0.034 0.966 32 H 0.034 0.966 33 H 0.082 0.918 34 H 0.367 0.633 35 H 0.247 0.753 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.051 0.949 39 H 0.113 0.887 40 H 0.114 0.886 41 H 0.099 0.901 42 H 0.213 0.787 43 H 0.083 0.917 44 H 0.076 0.924 45 H 0.112 0.888 46 H 0.077 0.923 47 H 0.069 0.931 48 H 0.117 0.883 49 H 0.108 0.892 50 H 0.116 0.884 51 H 0.072 0.928 52 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.722 -5.076 26.374 27.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.065 3.935 3 H 0.068 0.932 4 N -0.377 5.377 5 C -0.362 4.362 6 H 0.096 0.904 7 C -0.273 4.273 8 N -0.624 5.624 9 Si 0.799 3.201 10 H -0.218 1.218 11 H -0.226 1.226 12 H -0.190 1.190 13 C -0.108 4.108 14 H 0.065 0.935 15 C -0.147 4.147 16 C -0.163 4.163 17 C -0.047 4.047 18 N -0.320 5.320 19 C 0.368 3.632 20 O -0.472 6.472 21 C -0.220 4.220 22 C -0.120 4.120 23 N -0.231 5.231 24 C -0.032 4.032 25 N -0.108 5.108 26 C -0.030 4.030 27 C -0.165 4.165 28 C -0.158 4.158 29 C -0.074 4.074 30 C 0.011 3.989 31 H 0.054 0.946 32 H 0.053 0.947 33 H 0.100 0.900 34 H 0.198 0.802 35 H 0.056 0.944 36 H 0.102 0.898 37 H 0.099 0.901 38 H 0.070 0.930 39 H 0.131 0.869 40 H 0.132 0.868 41 H 0.117 0.883 42 H 0.229 0.771 43 H 0.102 0.898 44 H 0.094 0.906 45 H 0.130 0.870 46 H 0.096 0.904 47 H 0.088 0.912 48 H 0.135 0.865 49 H 0.126 0.874 50 H 0.134 0.866 51 H 0.091 0.909 52 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.058 -5.104 26.370 27.164 hybrid contribution 0.026 -0.141 -2.889 2.893 sum 4.083 -5.245 23.481 24.404 Atomic orbital electron populations 1.22323 0.97387 1.00509 1.01107 1.20477 0.93010 0.95085 0.84977 0.93157 1.42696 1.78374 1.10118 1.06540 1.19615 1.34294 0.94113 0.88221 0.90376 1.25560 1.03372 0.96822 1.01570 1.69856 1.52935 1.10406 1.29161 0.85185 0.77812 0.77481 0.79594 1.21784 1.22574 1.19046 1.21676 0.93315 0.99505 0.96329 0.93475 1.21636 1.01817 0.99452 0.91752 1.21897 0.94054 1.01007 0.99334 1.22832 0.95768 1.01045 0.85031 1.47918 1.42339 1.32772 1.09020 1.17298 0.79024 0.80048 0.86784 1.90840 1.59735 1.62020 1.34558 1.20524 1.16399 0.88022 0.97089 1.23349 1.00987 1.00992 0.86657 1.70020 1.20377 1.00302 1.32446 1.24387 1.00265 0.97743 0.80759 1.45359 1.45791 1.08650 1.11019 1.22290 1.02858 0.85946 0.91904 1.21972 0.98730 0.97491 0.98326 1.21704 1.02870 0.98457 0.92733 1.20563 1.02778 0.84980 0.99103 1.21516 0.94858 0.97917 0.84639 0.94638 0.94666 0.89972 0.80191 0.94419 0.89822 0.90084 0.93010 0.86886 0.86809 0.88320 0.77104 0.89846 0.90586 0.86994 0.90441 0.91236 0.86488 0.87362 0.86619 0.90939 0.92974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.27 9.14 71.98 0.66 -4.61 16 2 C 0.17 6.70 2.47 45.00 0.11 6.81 16 3 H 0.05 1.93 8.08 -2.39 -0.02 1.91 16 4 N -0.74 -38.28 4.52 -322.95 -1.46 -39.75 16 5 C -0.23 -13.08 9.93 84.03 0.83 -12.25 16 6 H 0.08 4.21 7.83 -2.91 -0.02 4.19 16 7 C -0.08 -4.87 5.50 84.86 0.47 -4.41 16 8 N -0.97 -62.94 13.06 21.65 0.28 -62.65 16 9 Si 0.97 48.01 29.55 68.60 2.03 50.04 16 10 H -0.29 -14.24 7.11 99.48 0.71 -13.53 16 11 H -0.30 -14.98 7.11 99.48 0.71 -14.27 16 12 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 13 C -0.09 -2.88 1.99 -10.57 -0.02 -2.90 16 14 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 15 C -0.11 -2.35 4.85 30.62 0.15 -2.20 16 16 C -0.12 -2.21 6.08 30.67 0.19 -2.03 16 17 C 0.07 1.45 5.38 86.36 0.47 1.91 16 18 N -0.59 -18.09 2.97 -822.68 -2.44 -20.53 16 19 C 0.58 20.85 7.57 86.47 0.65 21.50 16 20 O -0.59 -27.17 15.09 -4.29 -0.06 -27.23 16 21 C -0.10 -3.05 6.49 40.14 0.26 -2.79 16 22 C 0.03 0.81 9.55 84.12 0.80 1.62 16 23 N -0.51 -12.59 11.20 -186.67 -2.09 -14.68 16 24 C 0.23 5.05 7.64 138.30 1.06 6.11 16 25 N -0.43 -11.14 3.15 -501.17 -1.58 -12.72 16 26 C 0.09 2.12 6.51 86.48 0.56 2.69 16 27 C -0.13 -1.67 5.95 30.74 0.18 -1.49 16 28 C -0.12 -1.06 5.95 30.74 0.18 -0.88 16 29 C -0.04 -0.42 6.33 30.07 0.19 -0.23 16 30 C 0.13 4.86 5.50 86.51 0.48 5.33 16 31 H 0.03 1.32 8.14 -2.38 -0.02 1.30 16 32 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.08 2.11 6.40 -2.39 -0.02 2.10 16 34 H 0.37 21.32 7.64 -92.71 -0.71 20.61 16 35 H 0.25 15.61 8.31 -92.71 -0.77 14.83 16 36 H 0.08 1.63 6.36 -2.39 -0.02 1.61 16 37 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.11 2.02 3.61 -2.39 -0.01 2.02 16 41 H 0.10 1.47 8.14 -2.39 -0.02 1.46 16 42 H 0.21 3.71 6.00 -2.91 -0.02 3.70 16 43 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 44 H 0.08 2.24 7.15 -2.39 -0.02 2.23 16 45 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 46 H 0.08 1.03 8.12 -2.39 -0.02 1.01 16 47 H 0.07 0.69 8.12 -2.39 -0.02 0.67 16 48 H 0.12 0.37 8.14 -2.39 -0.02 0.35 16 49 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 50 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 51 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 52 H 0.05 2.51 6.53 -2.39 -0.02 2.49 16 Total: -1.00 -82.16 397.69 2.11 -80.05 By element: Atomic # 1 Polarization: 35.06 SS G_CDS: 0.22 Total: 35.28 kcal Atomic # 6 Polarization: 4.97 SS G_CDS: 7.22 Total: 12.19 kcal Atomic # 7 Polarization: -143.04 SS G_CDS: -7.29 Total: -150.33 kcal Atomic # 8 Polarization: -27.17 SS G_CDS: -0.06 Total: -27.23 kcal Atomic # 14 Polarization: 48.01 SS G_CDS: 2.03 Total: 50.04 kcal Total: -82.16 2.11 -80.05 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268174543.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.886 kcal (2) G-P(sol) polarization free energy of solvation -82.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.051 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds