Wall clock time and date at job start Wed Apr 1 2020 05:35:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.47222 * 2 1 4 4 N 1.46501 * 109.47100 * 120.00316 * 2 1 3 5 5 C 1.36945 * 119.99846 * 275.00039 * 4 2 1 6 6 H 1.08003 * 119.99556 * 359.97438 * 5 4 2 7 7 C 1.38809 * 119.99867 * 180.02562 * 5 4 2 8 8 N 1.31620 * 119.99461 * 179.97438 * 7 5 4 9 9 Si 1.86796 * 120.00318 * 359.97438 * 7 5 4 10 10 H 1.48505 * 109.46688 * 90.00181 * 9 7 5 11 11 H 1.48499 * 109.47152 * 210.00290 * 9 7 5 12 12 H 1.48502 * 109.46987 * 330.00474 * 9 7 5 13 13 C 1.53000 * 109.47014 * 239.99937 * 2 1 3 14 14 H 1.08997 * 110.91765 * 299.18174 * 13 2 1 15 15 C 1.55163 * 111.00341 * 175.28222 * 13 2 1 16 16 C 1.54322 * 102.94198 * 206.42574 * 15 13 2 17 17 N 1.47022 * 107.27218 * 22.19114 * 16 15 13 18 18 C 1.34773 * 125.64972 * 181.02260 * 17 16 15 19 19 O 1.21573 * 120.00418 * 180.02562 * 18 17 16 20 20 C 1.47715 * 120.00051 * 0.04559 * 18 17 16 21 21 N 1.32202 * 126.67552 * 0.02562 * 20 18 17 22 22 N 1.28849 * 110.15252 * 179.97438 * 21 20 18 23 23 C 1.46497 * 124.98028 * 179.97438 * 22 21 20 24 24 C 1.34315 * 110.03537 * 359.94307 * 22 21 20 25 25 C 1.35586 * 107.21919 * 359.87328 * 24 22 21 26 26 C 1.50375 * 124.61868 * 180.02562 * 25 24 22 27 27 C 1.53477 * 108.28592 * 343.94370 * 26 25 24 28 28 C 1.53112 * 109.50638 * 49.48619 * 27 26 25 29 29 C 1.50712 * 128.89972 * 180.21294 * 24 22 21 30 30 C 1.47421 * 108.70416 * 1.06036 * 17 16 15 31 31 H 1.09002 * 109.47514 * 54.77812 * 1 2 3 32 32 H 1.09004 * 109.47110 * 174.77653 * 1 2 3 33 33 H 1.09005 * 109.47190 * 294.77197 * 1 2 3 34 34 H 0.96997 * 120.00794 * 95.00208 * 4 2 1 35 35 H 0.97007 * 119.99800 * 179.97438 * 8 7 5 36 36 H 1.09003 * 110.71542 * 324.78687 * 15 13 2 37 37 H 1.08995 * 110.72125 * 88.06125 * 15 13 2 38 38 H 1.09003 * 109.88260 * 262.77167 * 16 15 13 39 39 H 1.09000 * 110.01127 * 141.67780 * 16 15 13 40 40 H 1.08990 * 109.47397 * 90.02259 * 23 22 21 41 41 H 1.09000 * 109.46960 * 210.02345 * 23 22 21 42 42 H 1.09002 * 109.47175 * 330.01907 * 23 22 21 43 43 H 1.08999 * 109.70203 * 103.63961 * 26 25 24 44 44 H 1.08996 * 109.70251 * 224.20100 * 26 25 24 45 45 H 1.08992 * 109.46918 * 169.50226 * 27 26 25 46 46 H 1.09007 * 109.46407 * 289.49126 * 27 26 25 47 47 H 1.08999 * 109.43824 * 49.99433 * 28 27 26 48 48 H 1.08997 * 109.43774 * 169.91936 * 28 27 26 49 49 H 1.09001 * 109.69315 * 283.01338 * 29 24 22 50 50 H 1.09001 * 109.69315 * 43.58952 * 29 24 22 51 51 H 1.09000 * 110.36958 * 217.03833 * 30 17 16 52 52 H 1.08996 * 110.46384 * 94.75884 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1491 -0.0075 2.3758 6 1 1.8926 1.0405 2.4242 7 6 2.6123 -0.6618 3.5090 8 7 2.7384 -0.0051 4.6427 9 14 3.0565 -2.4742 3.4251 10 1 4.4892 -2.6163 3.0608 11 1 2.8175 -3.1043 4.7484 12 1 2.2162 -3.1429 2.3995 13 6 2.0399 -0.7213 -1.2492 14 1 1.7016 -1.7573 -1.2658 15 6 3.5864 -0.6397 -1.3462 16 6 3.8445 -0.7603 -2.8629 17 7 2.6073 -0.3606 -3.5493 18 6 2.4183 -0.3478 -4.8837 19 8 1.3489 0.0034 -5.3429 20 6 3.5106 -0.7609 -5.7883 21 7 4.7186 -1.1651 -5.4346 22 7 5.4161 -1.4478 -6.4804 23 6 6.8007 -1.9257 -6.4625 24 6 4.6872 -1.2405 -7.5894 25 6 3.4660 -0.8061 -7.1918 26 6 2.3387 -0.4559 -8.1234 27 6 2.9165 -0.2829 -9.5347 28 6 3.7990 -1.4864 -9.8769 29 6 5.0802 -1.4385 -9.0309 30 6 1.6079 0.0246 -2.5364 31 1 -0.3634 0.5927 -0.8395 32 1 -0.3633 -1.0234 -0.0936 33 1 -0.3634 0.4306 0.9331 34 1 2.2490 -1.6318 1.1527 35 1 3.0617 -0.4623 5.4347 36 1 3.9464 0.3174 -0.9686 37 1 4.0506 -1.4667 -0.8090 38 1 4.0924 -1.7911 -3.1159 39 1 4.6608 -0.1002 -3.1560 40 1 6.8087 -3.0148 -6.4199 41 1 7.3114 -1.5937 -7.3664 42 1 7.3124 -1.5242 -5.5878 43 1 1.6003 -1.2576 -8.1244 44 1 1.8707 0.4741 -7.8007 45 1 2.1014 -0.2136 -10.2549 46 1 3.5139 0.6281 -9.5735 47 1 3.2543 -2.4069 -9.6671 48 1 4.0628 -1.4538 -10.9340 49 1 5.7146 -0.6136 -9.3553 50 1 5.6178 -2.3805 -9.1390 51 1 0.6126 -0.2957 -2.8443 52 1 1.6255 1.1023 -2.3743 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271529369.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:35:09 Heat of formation + Delta-G solvation = 48.869124 kcal Electronic energy + Delta-G solvation = -30955.815930 eV Core-core repulsion = 26956.806936 eV Total energy + Delta-G solvation = -3999.008994 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -43.06360 -39.79486 -37.74102 -37.24180 -35.28223 -34.03775 -32.36577 -30.75900 -30.62625 -30.04224 -29.61161 -28.14181 -27.05062 -24.76343 -24.02884 -23.18673 -22.37294 -21.68233 -21.25482 -19.79239 -19.45807 -18.99333 -17.58748 -17.14896 -16.78076 -16.60562 -15.98061 -15.24200 -15.10445 -14.82831 -14.28868 -14.08773 -14.02037 -13.81948 -13.71509 -13.59945 -13.28287 -13.21869 -13.02264 -12.90852 -12.60830 -12.56316 -12.44148 -12.30649 -12.12225 -11.83355 -11.51715 -11.25673 -11.16157 -10.98148 -10.96344 -10.83300 -10.75826 -10.51558 -10.37124 -10.21320 -10.01392 -9.85965 -9.56163 -9.30593 -8.91461 -8.81979 -8.48472 -7.24933 -5.74903 -3.09921 1.45188 1.87725 2.16653 3.04508 3.38130 3.40125 3.41196 3.46265 3.99579 4.13080 4.39279 4.49374 4.52784 4.60616 4.64226 4.77884 4.82265 4.87035 4.90816 4.96664 5.05874 5.10741 5.14698 5.22347 5.27188 5.43529 5.50799 5.52729 5.57669 5.60008 5.68702 5.74565 5.78757 5.80198 5.94151 5.96945 6.01839 6.05128 6.05776 6.20120 6.22171 6.30634 6.36324 6.43978 6.49732 6.55604 6.60180 6.83861 7.06514 7.54857 7.70170 8.01898 8.22570 8.44246 9.22999 9.95586 10.15766 11.43558 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.019923 B = 0.002336 C = 0.002149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.070979 B =11985.426144 C =13024.994798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.191 3.809 3 H 0.059 0.941 4 N -0.746 5.746 5 C -0.238 4.238 6 H 0.090 0.910 7 C 0.003 3.997 8 N -0.935 5.935 9 Si 0.883 3.117 10 H -0.285 1.285 11 H -0.292 1.292 12 H -0.277 1.277 13 C -0.107 4.107 14 H 0.079 0.921 15 C -0.121 4.121 16 C 0.111 3.889 17 N -0.604 5.604 18 C 0.615 3.385 19 O -0.536 6.536 20 C -0.004 4.004 21 N -0.259 5.259 22 N -0.278 5.278 23 C 0.086 3.914 24 C 0.004 3.996 25 C -0.144 4.144 26 C -0.042 4.042 27 C -0.121 4.121 28 C -0.114 4.114 29 C -0.045 4.045 30 C 0.117 3.883 31 H 0.041 0.959 32 H 0.044 0.956 33 H 0.060 0.940 34 H 0.360 0.640 35 H 0.259 0.741 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.068 0.932 39 H 0.069 0.931 40 H 0.084 0.916 41 H 0.093 0.907 42 H 0.098 0.902 43 H 0.075 0.925 44 H 0.084 0.916 45 H 0.070 0.930 46 H 0.064 0.936 47 H 0.068 0.932 48 H 0.072 0.928 49 H 0.081 0.919 50 H 0.076 0.924 51 H 0.079 0.921 52 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.691 -4.239 -31.905 33.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.081 3.919 3 H 0.077 0.923 4 N -0.389 5.389 5 C -0.368 4.368 6 H 0.108 0.892 7 C -0.192 4.192 8 N -0.583 5.583 9 Si 0.713 3.287 10 H -0.212 1.212 11 H -0.219 1.219 12 H -0.203 1.203 13 C -0.127 4.127 14 H 0.098 0.902 15 C -0.159 4.159 16 C -0.012 4.012 17 N -0.337 5.337 18 C 0.402 3.598 19 O -0.412 6.412 20 C -0.162 4.162 21 N -0.095 5.095 22 N -0.064 5.064 23 C -0.054 4.054 24 C -0.122 4.122 25 C -0.154 4.154 26 C -0.080 4.080 27 C -0.159 4.159 28 C -0.152 4.152 29 C -0.083 4.083 30 C -0.006 4.006 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.079 0.921 34 H 0.193 0.807 35 H 0.069 0.931 36 H 0.100 0.900 37 H 0.100 0.900 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.103 0.897 41 H 0.112 0.888 42 H 0.117 0.883 43 H 0.093 0.907 44 H 0.102 0.898 45 H 0.088 0.912 46 H 0.083 0.917 47 H 0.087 0.913 48 H 0.090 0.910 49 H 0.100 0.900 50 H 0.094 0.906 51 H 0.097 0.903 52 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 7.936 -4.106 -31.080 32.339 hybrid contribution 0.150 -1.351 -0.323 1.397 sum 8.087 -5.457 -31.403 32.883 Atomic orbital electron populations 1.22464 0.98741 1.00647 1.01000 1.20103 0.91959 0.95450 0.84403 0.92347 1.42744 1.79849 1.09312 1.07009 1.19060 1.36564 0.95501 0.85663 0.89199 1.24658 1.01626 0.97370 0.95592 1.69703 1.52834 1.35508 1.00263 0.86570 0.78381 0.86946 0.76761 1.21156 1.21895 1.20338 1.22716 0.95364 1.00241 0.94342 0.90218 1.22652 0.96170 1.03921 0.93109 1.22115 0.86232 1.00447 0.92431 1.48341 1.15868 1.64967 1.04562 1.16470 0.85488 0.77830 0.80009 1.90772 1.25703 1.49219 1.75506 1.21477 0.92932 1.08502 0.93315 1.73983 1.04625 1.17641 1.13214 1.45087 1.12147 1.46326 1.02887 1.22150 0.76763 1.01119 1.05394 1.21083 0.92694 1.07361 0.91022 1.19862 0.96109 1.06937 0.92484 1.19972 0.94043 1.02659 0.91301 1.21672 0.99368 0.98090 0.96727 1.21599 0.95097 0.99559 0.98937 1.20232 0.98820 1.02272 0.87022 1.22297 0.92267 0.99562 0.86443 0.93968 0.93698 0.92108 0.80733 0.93142 0.89968 0.90043 0.91366 0.91298 0.89712 0.88830 0.88323 0.90702 0.89785 0.91172 0.91742 0.91281 0.90961 0.90026 0.90578 0.90275 0.90924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.95 9.22 37.16 0.34 -2.61 16 2 C 0.19 3.54 2.40 -67.93 -0.16 3.37 16 3 H 0.06 1.13 8.07 -51.93 -0.42 0.71 16 4 N -0.75 -17.05 4.71 -53.43 -0.25 -17.30 16 5 C -0.24 -6.55 10.41 -15.06 -0.16 -6.71 16 6 H 0.09 2.67 8.06 -52.48 -0.42 2.24 16 7 C 0.00 0.09 5.50 -17.43 -0.10 -0.01 16 8 N -0.94 -29.20 13.97 55.49 0.78 -28.42 16 9 Si 0.88 21.93 27.74 -169.99 -4.71 17.22 16 10 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 11 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 12 H -0.28 -6.51 6.52 56.52 0.37 -6.14 16 13 C -0.11 -1.66 2.64 -88.47 -0.23 -1.90 16 14 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 15 C -0.12 -1.78 6.21 -24.89 -0.15 -1.93 16 16 C 0.11 1.51 5.55 -3.06 -0.02 1.49 16 17 N -0.60 -9.13 3.33 -171.68 -0.57 -9.70 16 18 C 0.62 9.91 7.86 -12.39 -0.10 9.81 16 19 O -0.54 -9.68 16.06 5.30 0.09 -9.59 16 20 C 0.00 -0.05 6.96 -82.99 -0.58 -0.63 16 21 N -0.26 -3.30 9.55 33.28 0.32 -2.99 16 22 N -0.28 -2.70 3.69 -63.97 -0.24 -2.94 16 23 C 0.09 0.42 11.17 59.85 0.67 1.08 16 24 C 0.00 0.03 6.71 -82.45 -0.55 -0.52 16 25 C -0.14 -1.74 5.99 -104.88 -0.63 -2.37 16 26 C -0.04 -0.44 5.54 -27.79 -0.15 -0.59 16 27 C -0.12 -0.85 5.91 -26.43 -0.16 -1.01 16 28 C -0.11 -0.63 5.90 -26.36 -0.16 -0.79 16 29 C -0.04 -0.25 5.81 -27.56 -0.16 -0.41 16 30 C 0.12 1.73 5.48 -2.53 -0.01 1.72 16 31 H 0.04 0.63 7.58 -51.93 -0.39 0.24 16 32 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.36 8.15 5.66 -40.82 -0.23 7.92 16 35 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 36 H 0.08 1.27 8.03 -51.93 -0.42 0.85 16 37 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.07 0.92 7.66 -51.93 -0.40 0.52 16 39 H 0.07 0.92 7.77 -51.93 -0.40 0.52 16 40 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.09 0.21 7.86 -51.93 -0.41 -0.20 16 42 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 44 H 0.08 1.00 7.67 -51.93 -0.40 0.60 16 45 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.06 0.45 8.11 -51.92 -0.42 0.03 16 47 H 0.07 0.42 8.12 -51.93 -0.42 0.00 16 48 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 49 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 50 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 51 H 0.08 1.19 8.04 -51.93 -0.42 0.77 16 52 H 0.07 1.06 8.03 -51.93 -0.42 0.64 16 LS Contribution 407.55 15.07 6.14 6.14 Total: -1.00 -34.71 407.55 -9.75 -44.45 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: -8.99 Total: 5.12 kcal Atomic # 6 Polarization: 0.31 SS G_CDS: -2.31 Total: -1.99 kcal Atomic # 7 Polarization: -61.38 SS G_CDS: 0.03 Total: -61.34 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: 0.09 Total: -9.59 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.71 Total: 17.22 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -34.71 -9.75 -44.45 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271529369.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.324 kcal (2) G-P(sol) polarization free energy of solvation -34.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.455 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds