Wall clock time and date at job start Wed Apr 1 2020 05:35:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.47222 * 2 1 4 4 N 1.46501 * 109.47100 * 120.00316 * 2 1 3 5 5 C 1.36945 * 119.99846 * 275.00039 * 4 2 1 6 6 H 1.08003 * 119.99556 * 359.97438 * 5 4 2 7 7 C 1.38809 * 119.99867 * 180.02562 * 5 4 2 8 8 N 1.31620 * 119.99461 * 179.97438 * 7 5 4 9 9 Si 1.86796 * 120.00318 * 359.97438 * 7 5 4 10 10 H 1.48505 * 109.46688 * 90.00181 * 9 7 5 11 11 H 1.48499 * 109.47152 * 210.00290 * 9 7 5 12 12 H 1.48502 * 109.46987 * 330.00474 * 9 7 5 13 13 C 1.53000 * 109.47014 * 239.99937 * 2 1 3 14 14 H 1.08997 * 110.91765 * 299.18174 * 13 2 1 15 15 C 1.55163 * 111.00341 * 175.28222 * 13 2 1 16 16 C 1.54322 * 102.94198 * 206.42574 * 15 13 2 17 17 N 1.47022 * 107.27218 * 22.19114 * 16 15 13 18 18 C 1.34773 * 125.64972 * 181.02260 * 17 16 15 19 19 O 1.21573 * 120.00418 * 180.02562 * 18 17 16 20 20 C 1.47715 * 120.00051 * 0.04559 * 18 17 16 21 21 N 1.32202 * 126.67552 * 0.02562 * 20 18 17 22 22 N 1.28849 * 110.15252 * 179.97438 * 21 20 18 23 23 C 1.46497 * 124.98028 * 179.97438 * 22 21 20 24 24 C 1.34315 * 110.03537 * 359.94307 * 22 21 20 25 25 C 1.35586 * 107.21919 * 359.87328 * 24 22 21 26 26 C 1.50375 * 124.61868 * 180.02562 * 25 24 22 27 27 C 1.53477 * 108.28592 * 343.94370 * 26 25 24 28 28 C 1.53112 * 109.50638 * 49.48619 * 27 26 25 29 29 C 1.50712 * 128.89972 * 180.21294 * 24 22 21 30 30 C 1.47421 * 108.70416 * 1.06036 * 17 16 15 31 31 H 1.09002 * 109.47514 * 54.77812 * 1 2 3 32 32 H 1.09004 * 109.47110 * 174.77653 * 1 2 3 33 33 H 1.09005 * 109.47190 * 294.77197 * 1 2 3 34 34 H 0.96997 * 120.00794 * 95.00208 * 4 2 1 35 35 H 0.97007 * 119.99800 * 179.97438 * 8 7 5 36 36 H 1.09003 * 110.71542 * 324.78687 * 15 13 2 37 37 H 1.08995 * 110.72125 * 88.06125 * 15 13 2 38 38 H 1.09003 * 109.88260 * 262.77167 * 16 15 13 39 39 H 1.09000 * 110.01127 * 141.67780 * 16 15 13 40 40 H 1.08990 * 109.47397 * 90.02259 * 23 22 21 41 41 H 1.09000 * 109.46960 * 210.02345 * 23 22 21 42 42 H 1.09002 * 109.47175 * 330.01907 * 23 22 21 43 43 H 1.08999 * 109.70203 * 103.63961 * 26 25 24 44 44 H 1.08996 * 109.70251 * 224.20100 * 26 25 24 45 45 H 1.08992 * 109.46918 * 169.50226 * 27 26 25 46 46 H 1.09007 * 109.46407 * 289.49126 * 27 26 25 47 47 H 1.08999 * 109.43824 * 49.99433 * 28 27 26 48 48 H 1.08997 * 109.43774 * 169.91936 * 28 27 26 49 49 H 1.09001 * 109.69315 * 283.01338 * 29 24 22 50 50 H 1.09001 * 109.69315 * 43.58952 * 29 24 22 51 51 H 1.09000 * 110.36958 * 217.03833 * 30 17 16 52 52 H 1.08996 * 110.46384 * 94.75884 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1491 -0.0075 2.3758 6 1 1.8926 1.0405 2.4242 7 6 2.6123 -0.6618 3.5090 8 7 2.7384 -0.0051 4.6427 9 14 3.0565 -2.4742 3.4251 10 1 4.4892 -2.6163 3.0608 11 1 2.8175 -3.1043 4.7484 12 1 2.2162 -3.1429 2.3995 13 6 2.0399 -0.7213 -1.2492 14 1 1.7016 -1.7573 -1.2658 15 6 3.5864 -0.6397 -1.3462 16 6 3.8445 -0.7603 -2.8629 17 7 2.6073 -0.3606 -3.5493 18 6 2.4183 -0.3478 -4.8837 19 8 1.3489 0.0034 -5.3429 20 6 3.5106 -0.7609 -5.7883 21 7 4.7186 -1.1651 -5.4346 22 7 5.4161 -1.4478 -6.4804 23 6 6.8007 -1.9257 -6.4625 24 6 4.6872 -1.2405 -7.5894 25 6 3.4660 -0.8061 -7.1918 26 6 2.3387 -0.4559 -8.1234 27 6 2.9165 -0.2829 -9.5347 28 6 3.7990 -1.4864 -9.8769 29 6 5.0802 -1.4385 -9.0309 30 6 1.6079 0.0246 -2.5364 31 1 -0.3634 0.5927 -0.8395 32 1 -0.3633 -1.0234 -0.0936 33 1 -0.3634 0.4306 0.9331 34 1 2.2490 -1.6318 1.1527 35 1 3.0617 -0.4623 5.4347 36 1 3.9464 0.3174 -0.9686 37 1 4.0506 -1.4667 -0.8090 38 1 4.0924 -1.7911 -3.1159 39 1 4.6608 -0.1002 -3.1560 40 1 6.8087 -3.0148 -6.4199 41 1 7.3114 -1.5937 -7.3664 42 1 7.3124 -1.5242 -5.5878 43 1 1.6003 -1.2576 -8.1244 44 1 1.8707 0.4741 -7.8007 45 1 2.1014 -0.2136 -10.2549 46 1 3.5139 0.6281 -9.5735 47 1 3.2543 -2.4069 -9.6671 48 1 4.0628 -1.4538 -10.9340 49 1 5.7146 -0.6136 -9.3553 50 1 5.6178 -2.3805 -9.1390 51 1 0.6126 -0.2957 -2.8443 52 1 1.6255 1.1023 -2.3743 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271529369.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:35:08 Heat of formation + Delta-G solvation = 27.151389 kcal Electronic energy + Delta-G solvation = -30956.757682 eV Core-core repulsion = 26956.806936 eV Total energy + Delta-G solvation = -3999.950745 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 2.11 seconds Orbital eigenvalues (eV) -43.85459 -41.02323 -39.06878 -37.85625 -36.89670 -34.80457 -34.22030 -32.26603 -31.25272 -31.12972 -30.77669 -29.31192 -27.99776 -26.16660 -25.03357 -24.42736 -23.09951 -22.73530 -22.57432 -21.33188 -20.32615 -19.89855 -19.52103 -18.04049 -17.65974 -17.52801 -17.23167 -16.55369 -16.32442 -15.82149 -15.65404 -15.22514 -15.01892 -14.71532 -14.68519 -14.57151 -14.35499 -14.20116 -14.09887 -13.98234 -13.83430 -13.66357 -13.49709 -13.42634 -13.33405 -12.98523 -12.89493 -12.83899 -12.38136 -12.05989 -11.91684 -11.83309 -11.74345 -11.72118 -11.70843 -11.61907 -11.57840 -11.39498 -11.10778 -10.94906 -10.13221 -9.75591 -9.52839 -9.28840 -7.97960 -5.30606 0.47909 1.07487 1.40063 1.43144 1.50224 1.51181 1.94794 2.28242 2.51849 3.17955 3.33477 3.37876 3.55140 3.62422 3.71558 3.82666 3.99460 4.04730 4.10547 4.23923 4.28192 4.29443 4.33188 4.36030 4.45744 4.48997 4.56144 4.59525 4.64886 4.65533 4.66970 4.75013 4.76073 4.88559 4.93625 4.97473 5.02602 5.04562 5.09938 5.13304 5.17170 5.23760 5.30210 5.33885 5.34936 5.46277 5.49566 5.57200 5.82188 5.90962 6.25747 6.37735 6.79278 7.07726 7.12327 7.88161 8.08212 9.23747 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.019923 B = 0.002336 C = 0.002149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.070979 B =11985.426144 C =13024.994798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.188 3.812 3 H 0.048 0.952 4 N -0.746 5.746 5 C -0.220 4.220 6 H 0.056 0.944 7 C -0.067 4.067 8 N -0.986 5.986 9 Si 0.953 3.047 10 H -0.276 1.276 11 H -0.301 1.301 12 H -0.253 1.253 13 C -0.095 4.095 14 H 0.086 0.914 15 C -0.117 4.117 16 C 0.124 3.876 17 N -0.607 5.607 18 C 0.609 3.391 19 O -0.568 6.568 20 C -0.039 4.039 21 N -0.274 5.274 22 N -0.271 5.271 23 C 0.073 3.927 24 C 0.018 3.982 25 C -0.173 4.173 26 C -0.041 4.041 27 C -0.116 4.116 28 C -0.112 4.112 29 C -0.043 4.043 30 C 0.121 3.879 31 H 0.068 0.932 32 H 0.052 0.948 33 H 0.035 0.965 34 H 0.365 0.635 35 H 0.256 0.744 36 H 0.073 0.927 37 H 0.085 0.915 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.101 0.899 41 H 0.126 0.874 42 H 0.100 0.900 43 H 0.063 0.937 44 H 0.057 0.943 45 H 0.080 0.920 46 H 0.066 0.934 47 H 0.061 0.939 48 H 0.100 0.900 49 H 0.102 0.898 50 H 0.103 0.897 51 H 0.078 0.922 52 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.745 -6.424 -35.384 37.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.079 3.921 3 H 0.066 0.934 4 N -0.389 5.389 5 C -0.351 4.351 6 H 0.074 0.926 7 C -0.258 4.258 8 N -0.637 5.637 9 Si 0.781 3.219 10 H -0.202 1.202 11 H -0.229 1.229 12 H -0.177 1.177 13 C -0.115 4.115 14 H 0.104 0.896 15 C -0.155 4.155 16 C 0.001 3.999 17 N -0.340 5.340 18 C 0.398 3.602 19 O -0.446 6.446 20 C -0.196 4.196 21 N -0.111 5.111 22 N -0.058 5.058 23 C -0.065 4.065 24 C -0.109 4.109 25 C -0.183 4.183 26 C -0.079 4.079 27 C -0.154 4.154 28 C -0.150 4.150 29 C -0.081 4.081 30 C -0.002 4.002 31 H 0.086 0.914 32 H 0.071 0.929 33 H 0.054 0.946 34 H 0.198 0.802 35 H 0.064 0.936 36 H 0.091 0.909 37 H 0.104 0.896 38 H 0.092 0.908 39 H 0.091 0.909 40 H 0.120 0.880 41 H 0.145 0.855 42 H 0.119 0.881 43 H 0.081 0.919 44 H 0.076 0.924 45 H 0.099 0.901 46 H 0.084 0.916 47 H 0.080 0.920 48 H 0.118 0.882 49 H 0.120 0.880 50 H 0.121 0.879 51 H 0.097 0.903 52 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 9.994 -6.299 -34.608 36.569 hybrid contribution -0.465 -0.578 0.681 1.007 sum 9.529 -6.877 -33.927 35.904 Atomic orbital electron populations 1.22347 0.97564 1.01430 1.00774 1.20244 0.92661 0.94982 0.84171 0.93379 1.42697 1.80008 1.09457 1.06759 1.18980 1.34483 0.94294 0.87303 0.92609 1.25463 1.02697 1.02411 0.95205 1.69891 1.55026 1.37646 1.01182 0.85436 0.78735 0.80972 0.76794 1.20167 1.22863 1.17739 1.22511 0.95979 1.00074 0.92911 0.89566 1.22617 0.95387 1.03599 0.93918 1.22020 0.85746 1.00827 0.91258 1.48396 1.16221 1.64839 1.04500 1.16842 0.85770 0.77299 0.80320 1.90734 1.27084 1.50709 1.76061 1.21357 0.93327 1.10880 0.94025 1.73886 1.04336 1.18264 1.14643 1.45604 1.13323 1.44571 1.02311 1.22622 0.74342 1.02248 1.07289 1.21664 0.91510 1.04993 0.92702 1.20177 0.97865 1.08343 0.91939 1.19939 0.93749 1.00813 0.93435 1.21656 1.00075 0.99152 0.94469 1.21620 0.94657 0.98144 1.00541 1.20464 0.99275 1.04456 0.83924 1.22208 0.92378 0.99497 0.86113 0.91363 0.92927 0.94618 0.80180 0.93555 0.90857 0.89645 0.90781 0.90909 0.88027 0.85537 0.88094 0.91864 0.92445 0.90089 0.91559 0.91992 0.88174 0.87956 0.87879 0.90336 0.90869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.55 9.22 71.98 0.66 -4.89 16 2 C 0.19 6.89 2.40 44.99 0.11 7.00 16 3 H 0.05 1.88 8.07 -2.39 -0.02 1.86 16 4 N -0.75 -33.64 4.71 -322.94 -1.52 -35.16 16 5 C -0.22 -12.30 10.41 84.03 0.87 -11.42 16 6 H 0.06 3.45 8.06 -2.91 -0.02 3.43 16 7 C -0.07 -3.91 5.50 84.86 0.47 -3.45 16 8 N -0.99 -63.33 13.97 21.65 0.30 -63.03 16 9 Si 0.95 45.19 27.74 68.60 1.90 47.10 16 10 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 11 H -0.30 -14.70 7.11 99.48 0.71 -13.99 16 12 H -0.25 -10.83 6.52 99.48 0.65 -10.18 16 13 C -0.09 -2.85 2.64 -9.40 -0.02 -2.88 16 14 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 15 C -0.12 -3.33 6.21 31.78 0.20 -3.13 16 16 C 0.12 3.27 5.55 86.73 0.48 3.75 16 17 N -0.61 -18.27 3.33 -815.35 -2.71 -20.98 16 18 C 0.61 20.09 7.86 86.75 0.68 20.77 16 19 O -0.57 -21.38 16.06 -3.94 -0.06 -21.45 16 20 C -0.04 -1.13 6.96 42.14 0.29 -0.83 16 21 N -0.27 -6.70 9.55 -48.62 -0.46 -7.16 16 22 N -0.27 -4.61 3.69 -356.29 -1.31 -5.93 16 23 C 0.07 0.44 11.17 127.77 1.43 1.87 16 24 C 0.02 0.30 6.71 41.57 0.28 0.57 16 25 C -0.17 -4.14 5.99 -20.03 -0.12 -4.26 16 26 C -0.04 -0.88 5.54 29.91 0.17 -0.71 16 27 C -0.12 -1.45 5.91 30.79 0.18 -1.27 16 28 C -0.11 -0.87 5.90 30.83 0.18 -0.69 16 29 C -0.04 -0.30 5.81 30.05 0.17 -0.13 16 30 C 0.12 3.54 5.48 86.86 0.48 4.01 16 31 H 0.07 1.98 7.58 -2.39 -0.02 1.96 16 32 H 0.05 1.72 8.14 -2.38 -0.02 1.70 16 33 H 0.03 1.39 8.14 -2.38 -0.02 1.37 16 34 H 0.36 15.81 5.66 -92.71 -0.52 15.29 16 35 H 0.26 15.70 8.31 -92.70 -0.77 14.93 16 36 H 0.07 2.22 8.03 -2.39 -0.02 2.20 16 37 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 38 H 0.07 1.90 7.66 -2.39 -0.02 1.88 16 39 H 0.07 1.88 7.77 -2.39 -0.02 1.86 16 40 H 0.10 0.33 8.14 -2.39 -0.02 0.31 16 41 H 0.13 -0.06 7.86 -2.39 -0.02 -0.08 16 42 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 43 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 44 H 0.06 1.48 7.67 -2.39 -0.02 1.46 16 45 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 46 H 0.07 0.81 8.11 -2.38 -0.02 0.79 16 47 H 0.06 0.60 8.12 -2.39 -0.02 0.58 16 48 H 0.10 0.29 8.14 -2.39 -0.02 0.27 16 49 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 50 H 0.10 0.25 8.14 -2.39 -0.02 0.23 16 51 H 0.08 2.33 8.04 -2.39 -0.02 2.31 16 52 H 0.07 2.13 8.03 -2.39 -0.02 2.11 16 Total: -1.00 -78.80 407.55 2.96 -75.84 By element: Atomic # 1 Polarization: 26.13 SS G_CDS: 0.32 Total: 26.46 kcal Atomic # 6 Polarization: -2.20 SS G_CDS: 6.51 Total: 4.31 kcal Atomic # 7 Polarization: -126.54 SS G_CDS: -5.71 Total: -132.25 kcal Atomic # 8 Polarization: -21.38 SS G_CDS: -0.06 Total: -21.45 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 1.90 Total: 47.10 kcal Total: -78.80 2.96 -75.84 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271529369.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.988 kcal (2) G-P(sol) polarization free energy of solvation -78.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.836 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.11 seconds