Wall clock time and date at job start Wed Apr 1 2020 05:35:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08993 * 109.47260 * 2 1 4 4 N 1.46502 * 109.46791 * 119.99562 * 2 1 3 5 5 C 1.36937 * 119.99954 * 275.00087 * 4 2 1 6 6 H 1.08000 * 120.00111 * 359.97438 * 5 4 2 7 7 C 1.38814 * 119.99869 * 179.97438 * 5 4 2 8 8 N 1.31618 * 120.00367 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 119.99949 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47050 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.46833 * 120.00184 * 9 7 5 12 12 H 1.48500 * 109.47050 * 240.00190 * 9 7 5 13 13 C 1.53001 * 109.47171 * 239.99009 * 2 1 3 14 14 H 1.08996 * 110.88840 * 302.43533 * 13 2 1 15 15 C 1.55157 * 110.99811 * 66.35674 * 13 2 1 16 16 C 1.54340 * 103.01766 * 153.38243 * 15 13 2 17 17 N 1.47017 * 107.26448 * 338.13393 * 16 15 13 18 18 C 1.34782 * 125.64764 * 178.85061 * 17 16 15 19 19 O 1.21570 * 119.99639 * 179.69669 * 18 17 16 20 20 C 1.47704 * 119.99639 * 359.69500 * 18 17 16 21 21 N 1.32199 * 126.68371 * 359.97438 * 20 18 17 22 22 N 1.28849 * 110.15614 * 179.97438 * 21 20 18 23 23 C 1.46497 * 124.98258 * 179.97438 * 22 21 20 24 24 C 1.34310 * 110.03963 * 359.93619 * 22 21 20 25 25 C 1.35592 * 107.21610 * 0.12695 * 24 22 21 26 26 C 1.50373 * 124.61831 * 179.86504 * 25 24 22 27 27 C 1.53476 * 108.28749 * 343.76559 * 26 25 24 28 28 C 1.53104 * 109.50134 * 49.49218 * 27 26 25 29 29 C 1.50707 * 128.90917 * 180.25416 * 24 22 21 30 30 C 1.47425 * 108.70406 * 358.59106 * 17 16 15 31 31 H 1.09004 * 109.46973 * 300.00842 * 1 2 3 32 32 H 1.09000 * 109.46336 * 60.00596 * 1 2 3 33 33 H 1.08994 * 109.47408 * 180.02562 * 1 2 3 34 34 H 0.97001 * 120.00339 * 94.99966 * 4 2 1 35 35 H 0.96997 * 120.00736 * 179.97438 * 8 7 5 36 36 H 1.09004 * 110.71777 * 271.93568 * 15 13 2 37 37 H 1.08999 * 110.72588 * 35.03525 * 15 13 2 38 38 H 1.09001 * 109.98939 * 218.66143 * 16 15 13 39 39 H 1.08994 * 109.77927 * 97.49630 * 16 15 13 40 40 H 1.09007 * 109.47032 * 89.97765 * 23 22 21 41 41 H 1.08998 * 109.47468 * 209.98146 * 23 22 21 42 42 H 1.09004 * 109.47252 * 329.98157 * 23 22 21 43 43 H 1.08998 * 109.70292 * 224.06734 * 26 25 24 44 44 H 1.09005 * 109.70283 * 103.46664 * 26 25 24 45 45 H 1.09002 * 109.46685 * 169.50125 * 27 26 25 46 46 H 1.08998 * 109.46565 * 289.48881 * 27 26 25 47 47 H 1.09007 * 109.44176 * 49.99633 * 28 27 26 48 48 H 1.09002 * 109.44419 * 169.88907 * 28 27 26 49 49 H 1.09006 * 109.68695 * 282.95398 * 29 24 22 50 50 H 1.09004 * 109.69012 * 43.48623 * 29 24 22 51 51 H 1.09005 * 110.36998 * 143.19256 * 30 17 16 52 52 H 1.09005 * 110.36549 * 265.40293 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.1491 -0.0073 2.3758 6 1 1.8926 1.0407 2.4241 7 6 2.6112 -0.6618 3.5094 8 7 2.9233 -1.9391 3.4507 9 14 2.7902 0.2704 5.1183 10 1 2.3763 1.6828 4.9208 11 1 1.9290 -0.3573 6.1525 12 1 4.2071 0.2266 5.5608 13 6 2.0401 -0.7215 -1.2491 14 1 1.6547 -1.7400 -1.2942 15 6 1.6777 0.0686 -2.5344 16 6 2.7789 -0.3593 -3.5276 17 7 3.9166 -0.8469 -2.7342 18 6 5.0709 -1.3327 -3.2323 19 8 5.9495 -1.7042 -2.4786 20 6 5.2682 -1.4138 -4.6939 21 7 4.4069 -1.0500 -5.6285 22 7 4.9065 -1.2581 -6.7978 23 6 4.2281 -0.9712 -8.0642 24 6 6.1406 -1.7759 -6.6856 25 6 6.4080 -1.8927 -5.3614 26 6 7.6901 -2.4354 -4.7934 27 6 8.4308 -3.1867 -5.9080 28 6 8.5017 -2.3059 -7.1583 29 6 7.1033 -2.1728 -7.7751 30 6 3.5882 -0.7105 -1.3034 31 1 -0.3633 0.5140 0.8899 32 1 -0.3632 0.5138 -0.8901 33 1 -0.3634 -1.0276 0.0005 34 1 2.2490 -1.6317 1.1528 35 1 3.2465 -2.3963 4.2427 36 1 0.6922 -0.2205 -2.8997 37 1 1.7202 1.1423 -2.3520 38 1 3.0872 0.4936 -4.1323 39 1 2.4063 -1.1568 -4.1703 40 1 4.4576 0.0475 -8.3766 41 1 4.5705 -1.6710 -8.8265 42 1 3.1513 -1.0767 -7.9316 43 1 7.4687 -3.1191 -3.9738 44 1 8.3080 -1.6140 -4.4305 45 1 9.4405 -3.4271 -5.5752 46 1 7.8967 -4.1076 -6.1423 47 1 8.8740 -1.3183 -6.8857 48 1 9.1765 -2.7598 -7.8841 49 1 6.7983 -3.1269 -8.2050 50 1 7.1155 -1.4075 -8.5512 51 1 3.9935 -1.5506 -0.7394 52 1 3.9765 0.2302 -0.9131 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271529370.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:35:15 Heat of formation + Delta-G solvation = 45.807869 kcal Electronic energy + Delta-G solvation = -31013.778312 eV Core-core repulsion = 27014.636572 eV Total energy + Delta-G solvation = -3999.141740 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.97420 -39.61222 -37.57584 -37.15212 -35.06772 -33.95056 -32.37450 -30.60710 -30.48185 -29.96281 -28.69389 -28.22870 -27.16409 -24.32800 -23.90112 -23.53701 -22.28685 -21.60243 -21.34580 -19.54698 -19.34643 -18.82658 -17.26930 -16.91064 -16.73933 -16.35298 -15.83165 -15.13509 -14.97836 -14.69656 -14.21239 -14.02484 -13.92771 -13.77113 -13.70938 -13.53909 -13.25097 -13.15157 -12.92150 -12.85604 -12.53407 -12.49957 -12.21570 -12.05828 -11.89841 -11.55657 -11.27736 -11.16960 -11.05955 -10.87863 -10.84177 -10.71759 -10.67769 -10.47427 -10.42954 -10.12252 -9.85256 -9.72261 -9.55123 -9.20883 -8.85055 -8.71763 -8.29151 -6.88878 -5.68903 -2.97684 1.55207 1.98682 2.23851 3.22764 3.48720 3.53941 3.56390 3.56447 4.06792 4.20600 4.49078 4.56655 4.59684 4.65851 4.67710 4.87592 4.88584 4.93082 4.99953 5.06199 5.15112 5.17130 5.24897 5.31301 5.36122 5.53897 5.61261 5.63667 5.69548 5.72454 5.84647 5.86970 5.91235 5.99096 6.02740 6.05008 6.12553 6.16609 6.23260 6.26367 6.36335 6.44040 6.47715 6.54995 6.63393 6.69062 6.74871 6.92401 7.14598 7.70991 7.77341 7.83272 8.42060 8.49095 9.60466 10.17909 10.52494 11.53719 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016524 B = 0.002438 C = 0.002170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.131434 B =11482.117733 C =12897.512086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.185 3.815 3 H 0.049 0.951 4 N -0.724 5.724 5 C -0.236 4.236 6 H 0.070 0.930 7 C -0.013 4.013 8 N -0.931 5.931 9 Si 0.904 3.096 10 H -0.281 1.281 11 H -0.293 1.293 12 H -0.292 1.292 13 C -0.101 4.101 14 H 0.080 0.920 15 C -0.126 4.126 16 C 0.114 3.886 17 N -0.607 5.607 18 C 0.611 3.389 19 O -0.529 6.529 20 C 0.000 4.000 21 N -0.262 5.262 22 N -0.280 5.280 23 C 0.088 3.912 24 C 0.003 3.997 25 C -0.143 4.143 26 C -0.043 4.043 27 C -0.121 4.121 28 C -0.114 4.114 29 C -0.044 4.044 30 C 0.122 3.878 31 H 0.053 0.947 32 H 0.037 0.963 33 H 0.045 0.955 34 H 0.384 0.616 35 H 0.254 0.746 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.066 0.934 39 H 0.067 0.933 40 H 0.083 0.917 41 H 0.092 0.908 42 H 0.097 0.903 43 H 0.085 0.915 44 H 0.075 0.925 45 H 0.070 0.930 46 H 0.064 0.936 47 H 0.068 0.932 48 H 0.071 0.929 49 H 0.080 0.920 50 H 0.076 0.924 51 H 0.084 0.916 52 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.017 0.637 -30.386 30.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.074 3.926 3 H 0.067 0.933 4 N -0.366 5.366 5 C -0.367 4.367 6 H 0.088 0.912 7 C -0.209 4.209 8 N -0.579 5.579 9 Si 0.735 3.265 10 H -0.206 1.206 11 H -0.220 1.220 12 H -0.219 1.219 13 C -0.121 4.121 14 H 0.098 0.902 15 C -0.165 4.165 16 C -0.009 4.009 17 N -0.340 5.340 18 C 0.398 3.602 19 O -0.404 6.404 20 C -0.158 4.158 21 N -0.098 5.098 22 N -0.067 5.067 23 C -0.053 4.053 24 C -0.123 4.123 25 C -0.153 4.153 26 C -0.081 4.081 27 C -0.158 4.158 28 C -0.152 4.152 29 C -0.083 4.083 30 C 0.001 3.999 31 H 0.072 0.928 32 H 0.056 0.944 33 H 0.065 0.935 34 H 0.218 0.782 35 H 0.064 0.936 36 H 0.097 0.903 37 H 0.094 0.906 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.102 0.898 41 H 0.111 0.889 42 H 0.115 0.885 43 H 0.104 0.896 44 H 0.094 0.906 45 H 0.089 0.911 46 H 0.082 0.918 47 H 0.087 0.913 48 H 0.090 0.910 49 H 0.098 0.902 50 H 0.094 0.906 51 H 0.103 0.897 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.428 1.022 -30.123 30.463 hybrid contribution 0.614 -0.070 0.883 1.078 sum 5.042 0.952 -29.240 29.687 Atomic orbital electron populations 1.22432 0.99140 1.00847 0.99914 1.20160 0.91859 0.95153 0.85384 0.93324 1.42433 1.78125 1.10743 1.05274 1.19244 1.36402 0.93795 0.87263 0.91208 1.24729 1.02268 0.95949 0.98000 1.69666 1.50936 1.08616 1.28710 0.86162 0.77296 0.78763 0.84239 1.20638 1.22012 1.21914 1.22659 0.94103 1.00249 0.95126 0.90173 1.22719 0.97824 1.00868 0.95045 1.21995 0.86122 0.99019 0.93781 1.48393 1.15146 1.61589 1.08876 1.16478 0.81286 0.77849 0.84635 1.90810 1.41905 1.49296 1.58356 1.21561 0.93634 1.07163 0.93486 1.73944 1.24971 1.21158 0.89706 1.45053 1.11386 1.44339 1.05888 1.22117 0.99443 1.02991 0.80739 1.21058 0.88601 1.05722 0.96886 1.19888 0.97774 1.06439 0.91178 1.19989 0.91033 0.99751 0.97362 1.21666 1.00758 0.98520 0.94876 1.21562 0.94899 1.01115 0.97622 1.20185 0.92676 1.01408 0.93981 1.22270 0.95110 1.03140 0.79419 0.92818 0.94420 0.93540 0.78248 0.93604 0.90275 0.90582 0.91565 0.91433 0.89828 0.88914 0.88471 0.89648 0.90626 0.91140 0.91761 0.91331 0.90997 0.90165 0.90599 0.89709 0.90957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.88 9.34 37.16 0.35 -2.53 16 2 C 0.18 3.60 2.41 -67.92 -0.16 3.43 16 3 H 0.05 0.97 8.05 -51.93 -0.42 0.55 16 4 N -0.72 -18.06 4.82 -53.42 -0.26 -18.32 16 5 C -0.24 -6.56 9.93 -15.06 -0.15 -6.71 16 6 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 7 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 8 N -0.93 -28.66 13.06 55.49 0.72 -27.93 16 9 Si 0.90 22.85 29.55 -169.99 -5.02 17.82 16 10 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 12 H -0.29 -7.47 7.11 56.52 0.40 -7.06 16 13 C -0.10 -1.69 2.63 -88.47 -0.23 -1.92 16 14 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 15 C -0.13 -1.64 5.58 -24.89 -0.14 -1.78 16 16 C 0.11 1.55 5.55 -3.06 -0.02 1.53 16 17 N -0.61 -10.30 3.33 -171.67 -0.57 -10.87 16 18 C 0.61 11.15 7.86 -12.39 -0.10 11.05 16 19 O -0.53 -11.19 16.06 5.30 0.09 -11.11 16 20 C 0.00 0.01 6.96 -82.99 -0.58 -0.57 16 21 N -0.26 -3.47 9.56 33.28 0.32 -3.15 16 22 N -0.28 -2.83 3.69 -63.96 -0.24 -3.07 16 23 C 0.09 0.42 11.17 59.85 0.67 1.09 16 24 C 0.00 0.03 6.71 -82.45 -0.55 -0.53 16 25 C -0.14 -1.90 5.99 -104.88 -0.63 -2.53 16 26 C -0.04 -0.52 5.54 -27.80 -0.15 -0.67 16 27 C -0.12 -1.00 5.91 -26.43 -0.16 -1.16 16 28 C -0.11 -0.74 5.89 -26.46 -0.16 -0.89 16 29 C -0.04 -0.28 5.81 -27.66 -0.16 -0.44 16 30 C 0.12 2.27 6.08 -2.53 -0.02 2.26 16 31 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 32 H 0.04 0.54 7.50 -51.93 -0.39 0.15 16 33 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.38 10.31 7.80 -40.82 -0.32 9.99 16 35 H 0.25 7.59 8.31 -40.82 -0.34 7.25 16 36 H 0.08 0.88 8.13 -51.93 -0.42 0.46 16 37 H 0.08 0.95 8.01 -51.93 -0.42 0.53 16 38 H 0.07 0.86 7.79 -51.93 -0.40 0.46 16 39 H 0.07 0.89 7.65 -51.93 -0.40 0.49 16 40 H 0.08 0.29 8.14 -51.92 -0.42 -0.13 16 41 H 0.09 0.22 7.86 -51.93 -0.41 -0.19 16 42 H 0.10 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.09 1.18 7.68 -51.93 -0.40 0.79 16 44 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 45 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.06 0.53 8.12 -51.93 -0.42 0.11 16 47 H 0.07 0.48 8.12 -51.93 -0.42 0.06 16 48 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 49 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 50 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 51 H 0.08 1.82 8.04 -51.93 -0.42 1.40 16 52 H 0.07 1.42 8.04 -51.93 -0.42 1.00 16 LS Contribution 410.57 15.07 6.19 6.19 Total: -1.00 -35.03 410.57 -10.08 -45.11 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: -9.02 Total: 6.19 kcal Atomic # 6 Polarization: 1.42 SS G_CDS: -2.28 Total: -0.86 kcal Atomic # 7 Polarization: -63.33 SS G_CDS: -0.02 Total: -63.35 kcal Atomic # 8 Polarization: -11.19 SS G_CDS: 0.09 Total: -11.11 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -5.02 Total: 17.82 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -35.03 -10.08 -45.11 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271529370.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.916 kcal (2) G-P(sol) polarization free energy of solvation -35.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds