Wall clock time and date at job start Wed Apr 1 2020 05:35:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08993 * 109.47260 * 2 1 4 4 N 1.46502 * 109.46791 * 119.99562 * 2 1 3 5 5 C 1.36937 * 119.99954 * 275.00087 * 4 2 1 6 6 H 1.08000 * 120.00111 * 359.97438 * 5 4 2 7 7 C 1.38814 * 119.99869 * 179.97438 * 5 4 2 8 8 N 1.31618 * 120.00367 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 119.99949 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47050 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.46833 * 120.00184 * 9 7 5 12 12 H 1.48500 * 109.47050 * 240.00190 * 9 7 5 13 13 C 1.53001 * 109.47171 * 239.99009 * 2 1 3 14 14 H 1.08996 * 110.88840 * 302.43533 * 13 2 1 15 15 C 1.55157 * 110.99811 * 66.35674 * 13 2 1 16 16 C 1.54340 * 103.01766 * 153.38243 * 15 13 2 17 17 N 1.47017 * 107.26448 * 338.13393 * 16 15 13 18 18 C 1.34782 * 125.64764 * 178.85061 * 17 16 15 19 19 O 1.21570 * 119.99639 * 179.69669 * 18 17 16 20 20 C 1.47704 * 119.99639 * 359.69500 * 18 17 16 21 21 N 1.32199 * 126.68371 * 359.97438 * 20 18 17 22 22 N 1.28849 * 110.15614 * 179.97438 * 21 20 18 23 23 C 1.46497 * 124.98258 * 179.97438 * 22 21 20 24 24 C 1.34310 * 110.03963 * 359.93619 * 22 21 20 25 25 C 1.35592 * 107.21610 * 0.12695 * 24 22 21 26 26 C 1.50373 * 124.61831 * 179.86504 * 25 24 22 27 27 C 1.53476 * 108.28749 * 343.76559 * 26 25 24 28 28 C 1.53104 * 109.50134 * 49.49218 * 27 26 25 29 29 C 1.50707 * 128.90917 * 180.25416 * 24 22 21 30 30 C 1.47425 * 108.70406 * 358.59106 * 17 16 15 31 31 H 1.09004 * 109.46973 * 300.00842 * 1 2 3 32 32 H 1.09000 * 109.46336 * 60.00596 * 1 2 3 33 33 H 1.08994 * 109.47408 * 180.02562 * 1 2 3 34 34 H 0.97001 * 120.00339 * 94.99966 * 4 2 1 35 35 H 0.96997 * 120.00736 * 179.97438 * 8 7 5 36 36 H 1.09004 * 110.71777 * 271.93568 * 15 13 2 37 37 H 1.08999 * 110.72588 * 35.03525 * 15 13 2 38 38 H 1.09001 * 109.98939 * 218.66143 * 16 15 13 39 39 H 1.08994 * 109.77927 * 97.49630 * 16 15 13 40 40 H 1.09007 * 109.47032 * 89.97765 * 23 22 21 41 41 H 1.08998 * 109.47468 * 209.98146 * 23 22 21 42 42 H 1.09004 * 109.47252 * 329.98157 * 23 22 21 43 43 H 1.08998 * 109.70292 * 224.06734 * 26 25 24 44 44 H 1.09005 * 109.70283 * 103.46664 * 26 25 24 45 45 H 1.09002 * 109.46685 * 169.50125 * 27 26 25 46 46 H 1.08998 * 109.46565 * 289.48881 * 27 26 25 47 47 H 1.09007 * 109.44176 * 49.99633 * 28 27 26 48 48 H 1.09002 * 109.44419 * 169.88907 * 28 27 26 49 49 H 1.09006 * 109.68695 * 282.95398 * 29 24 22 50 50 H 1.09004 * 109.69012 * 43.48623 * 29 24 22 51 51 H 1.09005 * 110.36998 * 143.19256 * 30 17 16 52 52 H 1.09005 * 110.36549 * 265.40293 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.1491 -0.0073 2.3758 6 1 1.8926 1.0407 2.4241 7 6 2.6112 -0.6618 3.5094 8 7 2.9233 -1.9391 3.4507 9 14 2.7902 0.2704 5.1183 10 1 2.3763 1.6828 4.9208 11 1 1.9290 -0.3573 6.1525 12 1 4.2071 0.2266 5.5608 13 6 2.0401 -0.7215 -1.2491 14 1 1.6547 -1.7400 -1.2942 15 6 1.6777 0.0686 -2.5344 16 6 2.7789 -0.3593 -3.5276 17 7 3.9166 -0.8469 -2.7342 18 6 5.0709 -1.3327 -3.2323 19 8 5.9495 -1.7042 -2.4786 20 6 5.2682 -1.4138 -4.6939 21 7 4.4069 -1.0500 -5.6285 22 7 4.9065 -1.2581 -6.7978 23 6 4.2281 -0.9712 -8.0642 24 6 6.1406 -1.7759 -6.6856 25 6 6.4080 -1.8927 -5.3614 26 6 7.6901 -2.4354 -4.7934 27 6 8.4308 -3.1867 -5.9080 28 6 8.5017 -2.3059 -7.1583 29 6 7.1033 -2.1728 -7.7751 30 6 3.5882 -0.7105 -1.3034 31 1 -0.3633 0.5140 0.8899 32 1 -0.3632 0.5138 -0.8901 33 1 -0.3634 -1.0276 0.0005 34 1 2.2490 -1.6317 1.1528 35 1 3.2465 -2.3963 4.2427 36 1 0.6922 -0.2205 -2.8997 37 1 1.7202 1.1423 -2.3520 38 1 3.0872 0.4936 -4.1323 39 1 2.4063 -1.1568 -4.1703 40 1 4.4576 0.0475 -8.3766 41 1 4.5705 -1.6710 -8.8265 42 1 3.1513 -1.0767 -7.9316 43 1 7.4687 -3.1191 -3.9738 44 1 8.3080 -1.6140 -4.4305 45 1 9.4405 -3.4271 -5.5752 46 1 7.8967 -4.1076 -6.1423 47 1 8.8740 -1.3183 -6.8857 48 1 9.1765 -2.7598 -7.8841 49 1 6.7983 -3.1269 -8.2050 50 1 7.1155 -1.4075 -8.5512 51 1 3.9935 -1.5506 -0.7394 52 1 3.9765 0.2302 -0.9131 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271529370.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:35:14 Heat of formation + Delta-G solvation = 23.178759 kcal Electronic energy + Delta-G solvation = -31014.759584 eV Core-core repulsion = 27014.636572 eV Total energy + Delta-G solvation = -4000.123012 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -43.85666 -40.99246 -39.02912 -37.86911 -36.77697 -34.79981 -34.21944 -32.08185 -31.25701 -30.81554 -30.04258 -29.86948 -28.05570 -25.92244 -25.28550 -24.51349 -23.10921 -22.82460 -22.56870 -21.09177 -20.32008 -19.87923 -19.10258 -18.06241 -17.63033 -17.43853 -17.19136 -16.52938 -16.37710 -15.73010 -15.59807 -15.43310 -15.14766 -14.74767 -14.59715 -14.53127 -14.35248 -14.20883 -14.05291 -13.89093 -13.64287 -13.57003 -13.37354 -13.31956 -13.10757 -12.90998 -12.87865 -12.71580 -12.36915 -12.15367 -12.05743 -11.81417 -11.75649 -11.71539 -11.67740 -11.59513 -11.52429 -11.36722 -11.10370 -10.94121 -10.12470 -9.74527 -9.53285 -8.98370 -7.91541 -5.19335 0.47049 1.06655 1.45703 1.47247 1.51533 1.56615 1.97174 2.27165 2.56920 3.19339 3.41808 3.50804 3.55103 3.67967 3.81158 3.85344 4.01487 4.06778 4.17883 4.24110 4.28744 4.31045 4.39772 4.42110 4.47773 4.55682 4.57707 4.63785 4.64295 4.68508 4.71886 4.75764 4.86714 4.90186 4.96994 4.97915 5.02276 5.07563 5.10425 5.14682 5.20875 5.24657 5.30484 5.35340 5.40260 5.45417 5.48223 5.54451 5.65246 5.91686 6.30441 6.42568 6.79801 7.07711 7.36010 8.13480 8.35063 9.32456 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016524 B = 0.002438 C = 0.002170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.131434 B =11482.117733 C =12897.512086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.180 3.820 3 H 0.047 0.953 4 N -0.738 5.738 5 C -0.229 4.229 6 H 0.078 0.922 7 C -0.081 4.081 8 N -0.972 5.972 9 Si 0.969 3.031 10 H -0.263 1.263 11 H -0.294 1.294 12 H -0.299 1.299 13 C -0.090 4.090 14 H 0.076 0.924 15 C -0.111 4.111 16 C 0.118 3.882 17 N -0.609 5.609 18 C 0.601 3.399 19 O -0.578 6.578 20 C -0.038 4.038 21 N -0.266 5.266 22 N -0.268 5.268 23 C 0.073 3.927 24 C 0.021 3.979 25 C -0.176 4.176 26 C -0.044 4.044 27 C -0.115 4.115 28 C -0.111 4.111 29 C -0.041 4.041 30 C 0.127 3.873 31 H 0.035 0.965 32 H 0.081 0.919 33 H 0.041 0.959 34 H 0.369 0.631 35 H 0.248 0.752 36 H 0.113 0.887 37 H 0.089 0.911 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.103 0.897 41 H 0.126 0.874 42 H 0.104 0.896 43 H 0.050 0.950 44 H 0.060 0.940 45 H 0.078 0.922 46 H 0.066 0.934 47 H 0.060 0.940 48 H 0.102 0.898 49 H 0.103 0.897 50 H 0.108 0.892 51 H 0.041 0.959 52 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.764 2.102 -35.079 35.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.072 3.928 3 H 0.065 0.935 4 N -0.378 5.378 5 C -0.361 4.361 6 H 0.095 0.905 7 C -0.273 4.273 8 N -0.624 5.624 9 Si 0.798 3.202 10 H -0.188 1.188 11 H -0.221 1.221 12 H -0.227 1.227 13 C -0.110 4.110 14 H 0.094 0.906 15 C -0.149 4.149 16 C -0.004 4.004 17 N -0.341 5.341 18 C 0.389 3.611 19 O -0.457 6.457 20 C -0.194 4.194 21 N -0.103 5.103 22 N -0.055 5.055 23 C -0.065 4.065 24 C -0.106 4.106 25 C -0.187 4.187 26 C -0.082 4.082 27 C -0.153 4.153 28 C -0.149 4.149 29 C -0.079 4.079 30 C 0.004 3.996 31 H 0.055 0.945 32 H 0.099 0.901 33 H 0.060 0.940 34 H 0.201 0.799 35 H 0.057 0.943 36 H 0.131 0.869 37 H 0.108 0.892 38 H 0.096 0.904 39 H 0.095 0.905 40 H 0.122 0.878 41 H 0.144 0.856 42 H 0.123 0.877 43 H 0.068 0.932 44 H 0.078 0.922 45 H 0.097 0.903 46 H 0.085 0.915 47 H 0.079 0.921 48 H 0.121 0.879 49 H 0.121 0.879 50 H 0.126 0.874 51 H 0.060 0.940 52 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.110 2.549 -34.879 35.110 hybrid contribution 0.995 -0.489 2.174 2.440 sum 4.105 2.060 -32.706 33.027 Atomic orbital electron populations 1.22260 0.96726 1.00967 1.01193 1.20416 0.93342 0.94697 0.84386 0.93455 1.42672 1.78465 1.10248 1.06420 1.19641 1.34171 0.94106 0.88160 0.90454 1.25541 1.03406 0.96864 1.01500 1.69836 1.53053 1.10314 1.29154 0.85129 0.76524 0.78361 0.80145 1.18761 1.22149 1.22663 1.22485 0.92030 1.00516 0.96017 0.90605 1.22747 0.99098 1.00959 0.92085 1.22153 0.84925 0.99635 0.93677 1.48494 1.15898 1.61340 1.08351 1.17066 0.80887 0.77031 0.86098 1.90760 1.43539 1.51415 1.59963 1.21223 0.95685 1.10330 0.92160 1.73832 1.24695 1.21303 0.90517 1.45637 1.11423 1.42116 1.06369 1.22667 0.99786 1.05216 0.78830 1.21621 0.88869 1.03423 0.96684 1.20166 0.97750 1.07891 0.92868 1.19934 0.91416 0.98912 0.97956 1.21648 1.00520 0.98479 0.94618 1.21583 0.95914 1.00406 0.97025 1.20433 0.90941 1.03471 0.93101 1.22016 0.96743 1.00326 0.80479 0.94536 0.90060 0.94002 0.79927 0.94325 0.86901 0.89249 0.90366 0.90485 0.87821 0.85566 0.87705 0.93181 0.92199 0.90291 0.91484 0.92087 0.87937 0.87862 0.87396 0.94037 0.92650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.06 9.34 71.98 0.67 -4.39 16 2 C 0.18 6.97 2.41 44.99 0.11 7.08 16 3 H 0.05 1.86 8.05 -2.39 -0.02 1.84 16 4 N -0.74 -38.05 4.82 -322.93 -1.56 -39.61 16 5 C -0.23 -12.99 9.93 84.03 0.83 -12.15 16 6 H 0.08 4.20 7.83 -2.91 -0.02 4.17 16 7 C -0.08 -4.86 5.50 84.86 0.47 -4.39 16 8 N -0.97 -62.48 13.06 21.65 0.28 -62.20 16 9 Si 0.97 48.17 29.55 68.60 2.03 50.20 16 10 H -0.26 -12.17 7.11 99.48 0.71 -11.46 16 11 H -0.29 -14.57 7.11 99.48 0.71 -13.86 16 12 H -0.30 -15.08 7.11 99.48 0.71 -14.37 16 13 C -0.09 -3.02 2.63 -9.40 -0.02 -3.05 16 14 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 15 C -0.11 -2.59 5.58 31.79 0.18 -2.41 16 16 C 0.12 3.06 5.55 86.74 0.48 3.54 16 17 N -0.61 -21.72 3.33 -815.32 -2.71 -24.44 16 18 C 0.60 23.75 7.86 86.74 0.68 24.43 16 19 O -0.58 -27.37 16.06 -3.94 -0.06 -27.43 16 20 C -0.04 -1.21 6.96 42.14 0.29 -0.92 16 21 N -0.27 -6.73 9.56 -48.63 -0.46 -7.20 16 22 N -0.27 -4.67 3.69 -356.28 -1.31 -5.99 16 23 C 0.07 0.37 11.17 127.77 1.43 1.79 16 24 C 0.02 0.38 6.71 41.57 0.28 0.66 16 25 C -0.18 -4.83 5.99 -20.03 -0.12 -4.95 16 26 C -0.04 -1.15 5.54 29.91 0.17 -0.99 16 27 C -0.12 -1.84 5.91 30.79 0.18 -1.66 16 28 C -0.11 -1.11 5.89 30.77 0.18 -0.92 16 29 C -0.04 -0.34 5.81 29.99 0.17 -0.16 16 30 C 0.13 5.07 6.08 86.85 0.53 5.60 16 31 H 0.04 1.33 8.14 -2.38 -0.02 1.31 16 32 H 0.08 2.01 7.50 -2.39 -0.02 1.99 16 33 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.37 20.96 7.80 -92.71 -0.72 20.24 16 35 H 0.25 15.51 8.31 -92.71 -0.77 14.74 16 36 H 0.11 1.98 8.13 -2.38 -0.02 1.96 16 37 H 0.09 1.92 8.01 -2.39 -0.02 1.90 16 38 H 0.08 1.88 7.79 -2.39 -0.02 1.86 16 39 H 0.08 1.88 7.65 -2.39 -0.02 1.87 16 40 H 0.10 0.20 8.14 -2.38 -0.02 0.18 16 41 H 0.13 -0.15 7.86 -2.39 -0.02 -0.17 16 42 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 43 H 0.05 1.61 7.68 -2.39 -0.02 1.59 16 44 H 0.06 1.67 8.14 -2.38 -0.02 1.65 16 45 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 46 H 0.07 1.03 8.12 -2.39 -0.02 1.01 16 47 H 0.06 0.72 8.12 -2.38 -0.02 0.70 16 48 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 49 H 0.10 0.49 8.14 -2.38 -0.02 0.47 16 50 H 0.11 0.30 8.14 -2.39 -0.02 0.28 16 51 H 0.04 1.98 8.04 -2.38 -0.02 1.96 16 52 H 0.06 2.35 8.04 -2.38 -0.02 2.33 16 Total: -1.00 -84.29 410.57 2.89 -81.40 By element: Atomic # 1 Polarization: 27.98 SS G_CDS: 0.18 Total: 28.16 kcal Atomic # 6 Polarization: 0.59 SS G_CDS: 6.51 Total: 7.10 kcal Atomic # 7 Polarization: -133.67 SS G_CDS: -5.76 Total: -139.43 kcal Atomic # 8 Polarization: -27.37 SS G_CDS: -0.06 Total: -27.43 kcal Atomic # 14 Polarization: 48.17 SS G_CDS: 2.03 Total: 50.20 kcal Total: -84.29 2.89 -81.40 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271529370.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.576 kcal (2) G-P(sol) polarization free energy of solvation -84.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.397 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds