Wall clock time and date at job start Wed Apr 1 2020 05:35:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09008 * 109.47167 * 2 1 4 4 N 1.46491 * 109.47329 * 239.99795 * 2 1 3 5 5 C 1.36931 * 120.00411 * 85.00326 * 4 2 1 6 6 H 1.08001 * 120.00115 * 359.97438 * 5 4 2 7 7 C 1.38811 * 120.00457 * 180.02562 * 5 4 2 8 8 N 1.31621 * 119.99885 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00317 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47242 * 59.99777 * 9 7 5 11 11 H 1.48507 * 109.47026 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47093 * 299.99458 * 9 7 5 13 13 C 1.52999 * 109.46838 * 119.99214 * 2 1 3 14 14 H 1.09006 * 110.88251 * 63.88532 * 13 2 1 15 15 C 1.55150 * 111.01025 * 300.00430 * 13 2 1 16 16 C 1.54317 * 102.94509 * 206.38609 * 15 13 2 17 17 N 1.47016 * 107.27257 * 22.18903 * 16 15 13 18 18 C 1.34784 * 125.65078 * 181.02490 * 17 16 15 19 19 O 1.21569 * 119.99674 * 179.75231 * 18 17 16 20 20 C 1.47704 * 119.99658 * 0.02562 * 18 17 16 21 21 N 1.32208 * 126.68169 * 0.03166 * 20 18 17 22 22 N 1.28841 * 110.14985 * 179.97438 * 21 20 18 23 23 C 1.46501 * 124.97865 * 179.90623 * 22 21 20 24 24 C 1.34313 * 110.04510 * 359.94048 * 22 21 20 25 25 C 1.35582 * 107.21318 * 359.83391 * 24 22 21 26 26 C 1.50374 * 124.61969 * 180.02562 * 25 24 22 27 27 C 1.53473 * 108.28355 * 343.97285 * 26 25 24 28 28 C 1.53103 * 109.50719 * 49.48846 * 27 26 25 29 29 C 1.50709 * 128.90530 * 180.22021 * 24 22 21 30 30 C 1.47422 * 108.70287 * 1.29125 * 17 16 15 31 31 H 1.08996 * 109.47217 * 300.00790 * 1 2 3 32 32 H 1.09003 * 109.46979 * 60.00269 * 1 2 3 33 33 H 1.08998 * 109.47179 * 180.02562 * 1 2 3 34 34 H 0.97003 * 119.99717 * 264.99827 * 4 2 1 35 35 H 0.97003 * 120.00658 * 180.02562 * 8 7 5 36 36 H 1.09003 * 110.72057 * 88.01516 * 15 13 2 37 37 H 1.09001 * 110.86884 * 324.81933 * 15 13 2 38 38 H 1.09000 * 109.88145 * 262.77116 * 16 15 13 39 39 H 1.08998 * 110.01533 * 141.68044 * 16 15 13 40 40 H 1.08996 * 109.47487 * 90.02299 * 23 22 21 41 41 H 1.08997 * 109.47567 * 210.02567 * 23 22 21 42 42 H 1.09006 * 109.46989 * 330.02064 * 23 22 21 43 43 H 1.09006 * 109.70224 * 103.66810 * 26 25 24 44 44 H 1.09004 * 109.70759 * 224.23548 * 26 25 24 45 45 H 1.09003 * 109.47250 * 169.49997 * 27 26 25 46 46 H 1.09003 * 109.46670 * 289.48356 * 27 26 25 47 47 H 1.08997 * 109.44602 * 49.99213 * 28 27 26 48 48 H 1.09007 * 109.44584 * 169.92271 * 28 27 26 49 49 H 1.09003 * 109.69225 * 283.00539 * 29 24 22 50 50 H 1.09000 * 109.69725 * 43.58181 * 29 24 22 51 51 H 1.08996 * 110.37059 * 94.48400 * 30 17 16 52 52 H 1.09001 * 110.36609 * 216.80695 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1493 -0.0076 -2.3756 6 1 1.8921 1.0402 -2.4244 7 6 2.6115 -0.6621 -3.5091 8 7 2.9245 -1.9392 -3.4500 9 14 2.7894 0.2695 -5.1184 10 1 3.7447 1.3919 -4.9377 11 1 3.2985 -0.6491 -6.1684 12 1 1.4669 0.8061 -5.5285 13 6 2.0400 -0.7211 1.2494 14 1 1.7468 -1.7709 1.2389 15 6 1.5425 -0.0176 2.5396 16 6 2.6243 -0.3898 3.5753 17 7 3.8421 -0.7376 2.8287 18 6 5.0089 -1.1382 3.3716 19 8 5.9531 -1.4053 2.6540 20 6 5.1383 -1.2584 4.8381 21 7 4.2011 -1.0092 5.7367 22 7 4.6571 -1.2187 6.9234 23 6 3.8927 -1.0407 8.1604 24 6 5.9363 -1.6233 6.8602 25 6 6.2793 -1.6661 5.5492 26 6 7.6321 -2.0718 5.0329 27 6 8.6268 -2.0261 6.2008 28 6 8.0452 -2.7835 7.3975 29 6 6.8707 -1.9868 7.9854 30 6 3.5776 -0.5696 1.3882 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0276 0.0005 34 1 2.2491 -1.6318 -1.1524 35 1 3.2479 -2.3966 -4.2419 36 1 0.5700 -0.4071 2.8408 37 1 1.4974 1.0625 2.4003 38 1 2.2942 -1.2448 4.1652 39 1 2.8209 0.4587 4.2306 40 1 3.3910 -1.9742 8.4150 41 1 4.5686 -0.7595 8.9680 42 1 3.1497 -0.2558 8.0186 43 1 7.5837 -3.0838 4.6309 44 1 7.9498 -1.3810 4.2517 45 1 9.5648 -2.4912 5.8976 46 1 8.8099 -0.9889 6.4816 47 1 7.6980 -3.7642 7.0724 48 1 8.8157 -2.9055 8.1590 49 1 7.2350 -1.0798 8.4679 50 1 6.3459 -2.6052 8.7136 51 1 3.8952 0.4191 1.0569 52 1 4.0879 -1.3443 0.8159 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271529371.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:35:20 Heat of formation + Delta-G solvation = 46.152361 kcal Electronic energy + Delta-G solvation = -30983.830451 eV Core-core repulsion = 26984.703650 eV Total energy + Delta-G solvation = -3999.126801 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.98107 -39.62191 -37.58456 -37.15125 -35.07084 -33.95552 -32.38355 -30.60532 -30.47937 -29.96560 -28.71464 -28.21308 -27.16067 -24.32956 -23.92004 -23.53166 -22.29185 -21.60759 -21.36465 -19.55605 -19.34614 -18.82490 -17.26603 -16.91813 -16.68557 -16.45626 -15.81092 -15.10410 -15.01176 -14.71038 -14.20878 -14.06114 -13.93919 -13.77477 -13.65708 -13.54130 -13.27138 -13.15443 -12.90946 -12.84342 -12.55578 -12.53322 -12.23092 -12.06650 -11.90276 -11.53069 -11.29880 -11.17035 -11.06566 -10.88378 -10.81344 -10.72255 -10.68660 -10.48535 -10.41773 -10.15356 -9.86996 -9.73758 -9.54694 -9.21567 -8.83841 -8.72502 -8.30653 -6.88896 -5.68594 -2.97397 1.54478 1.97950 2.23296 3.21544 3.49540 3.53911 3.54911 3.55251 4.06170 4.20161 4.48001 4.56952 4.59265 4.65872 4.67384 4.87266 4.88019 4.92740 4.99108 5.05578 5.14216 5.17119 5.24126 5.30823 5.35517 5.53178 5.60749 5.63583 5.69017 5.71421 5.83794 5.86336 5.90392 5.98929 6.02612 6.05432 6.11864 6.15774 6.22619 6.25711 6.35199 6.42191 6.48747 6.53597 6.62218 6.68121 6.74295 6.92917 7.14585 7.70014 7.76468 7.82205 8.40695 8.49517 9.60643 10.18195 10.52789 11.53941 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016826 B = 0.002406 C = 0.002149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.655644 B =11636.163642 C =13023.454492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.185 3.815 3 H 0.049 0.951 4 N -0.724 5.724 5 C -0.237 4.237 6 H 0.069 0.931 7 C -0.013 4.013 8 N -0.932 5.932 9 Si 0.905 3.095 10 H -0.286 1.286 11 H -0.292 1.292 12 H -0.287 1.287 13 C -0.101 4.101 14 H 0.081 0.919 15 C -0.126 4.126 16 C 0.114 3.886 17 N -0.607 5.607 18 C 0.611 3.389 19 O -0.529 6.529 20 C 0.000 4.000 21 N -0.262 5.262 22 N -0.280 5.280 23 C 0.088 3.912 24 C 0.003 3.997 25 C -0.143 4.143 26 C -0.043 4.043 27 C -0.121 4.121 28 C -0.114 4.114 29 C -0.044 4.044 30 C 0.121 3.879 31 H 0.037 0.963 32 H 0.052 0.948 33 H 0.045 0.955 34 H 0.384 0.616 35 H 0.255 0.745 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.067 0.933 39 H 0.066 0.934 40 H 0.083 0.917 41 H 0.092 0.908 42 H 0.097 0.903 43 H 0.076 0.924 44 H 0.085 0.915 45 H 0.070 0.930 46 H 0.063 0.937 47 H 0.069 0.931 48 H 0.071 0.929 49 H 0.081 0.919 50 H 0.075 0.925 51 H 0.071 0.929 52 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.344 0.755 30.691 31.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.074 3.926 3 H 0.067 0.933 4 N -0.365 5.365 5 C -0.368 4.368 6 H 0.087 0.913 7 C -0.209 4.209 8 N -0.580 5.580 9 Si 0.736 3.264 10 H -0.213 1.213 11 H -0.218 1.218 12 H -0.214 1.214 13 C -0.121 4.121 14 H 0.099 0.901 15 C -0.164 4.164 16 C -0.010 4.010 17 N -0.340 5.340 18 C 0.398 3.602 19 O -0.404 6.404 20 C -0.159 4.159 21 N -0.098 5.098 22 N -0.067 5.067 23 C -0.053 4.053 24 C -0.123 4.123 25 C -0.153 4.153 26 C -0.081 4.081 27 C -0.158 4.158 28 C -0.152 4.152 29 C -0.083 4.083 30 C -0.001 4.001 31 H 0.056 0.944 32 H 0.072 0.928 33 H 0.065 0.935 34 H 0.217 0.783 35 H 0.065 0.935 36 H 0.097 0.903 37 H 0.094 0.906 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.102 0.898 41 H 0.111 0.889 42 H 0.115 0.885 43 H 0.094 0.906 44 H 0.103 0.897 45 H 0.088 0.912 46 H 0.082 0.918 47 H 0.087 0.913 48 H 0.090 0.910 49 H 0.099 0.901 50 H 0.094 0.906 51 H 0.089 0.911 52 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 3.748 1.073 30.398 30.647 hybrid contribution 0.608 -0.046 -0.858 1.052 sum 4.356 1.027 29.540 29.877 Atomic orbital electron populations 1.22439 0.99152 1.00845 0.99924 1.20149 0.91857 0.95159 0.85390 0.93340 1.42414 1.78146 1.10714 1.05251 1.19155 1.36596 0.93777 0.87304 0.91315 1.24725 1.02231 0.95949 0.97996 1.69649 1.50814 1.08630 1.28930 0.86302 0.77677 0.78639 0.83762 1.21309 1.21774 1.21401 1.22696 0.93684 1.00695 0.95000 0.90071 1.22714 0.97732 1.01311 0.94671 1.22000 0.84329 1.00328 0.94296 1.48389 1.11222 1.65457 1.08917 1.16481 0.81844 0.77483 0.84413 1.90807 1.37986 1.50724 1.60912 1.21556 0.92302 1.08323 0.93694 1.73947 1.25494 1.20807 0.89517 1.45055 1.08867 1.46884 1.05845 1.22118 0.97099 1.04327 0.81753 1.21061 0.86876 1.07149 0.97181 1.19883 0.97314 1.07024 0.91047 1.19990 0.88686 1.02238 0.97222 1.21669 0.98474 1.00697 0.94990 1.21603 0.96485 0.99121 0.97992 1.20223 0.94058 1.00453 0.93525 1.22335 0.95978 1.02658 0.79082 0.94375 0.92838 0.93546 0.78257 0.93507 0.90261 0.90563 0.91438 0.91569 0.89803 0.88915 0.88477 0.90581 0.89696 0.91157 0.91791 0.91250 0.91009 0.90101 0.90647 0.91058 0.89683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.88 9.27 37.16 0.34 -2.54 16 2 C 0.18 3.60 2.43 -67.93 -0.17 3.44 16 3 H 0.05 0.97 8.01 -51.92 -0.42 0.55 16 4 N -0.72 -18.08 4.97 -53.43 -0.27 -18.35 16 5 C -0.24 -6.61 9.93 -15.06 -0.15 -6.76 16 6 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 7 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 8 N -0.93 -28.68 13.06 55.49 0.72 -27.96 16 9 Si 0.90 22.85 29.55 -169.99 -5.02 17.82 16 10 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 11 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 12 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 13 C -0.10 -1.68 2.67 -88.36 -0.24 -1.92 16 14 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 15 C -0.13 -1.63 5.28 -24.90 -0.13 -1.77 16 16 C 0.11 1.54 5.55 -3.07 -0.02 1.52 16 17 N -0.61 -10.22 3.32 -171.55 -0.57 -10.79 16 18 C 0.61 11.07 7.86 -12.39 -0.10 10.97 16 19 O -0.53 -11.10 16.05 5.30 0.09 -11.02 16 20 C 0.00 0.00 6.96 -82.99 -0.58 -0.58 16 21 N -0.26 -3.45 9.55 33.28 0.32 -3.13 16 22 N -0.28 -2.82 3.69 -63.96 -0.24 -3.05 16 23 C 0.09 0.42 11.17 59.85 0.67 1.09 16 24 C 0.00 0.03 6.71 -82.45 -0.55 -0.53 16 25 C -0.14 -1.89 5.99 -104.88 -0.63 -2.52 16 26 C -0.04 -0.52 5.54 -27.80 -0.15 -0.67 16 27 C -0.12 -0.99 5.91 -26.43 -0.16 -1.14 16 28 C -0.11 -0.73 5.90 -26.36 -0.16 -0.89 16 29 C -0.04 -0.27 5.81 -27.56 -0.16 -0.43 16 30 C 0.12 2.23 6.24 -2.41 -0.02 2.21 16 31 H 0.04 0.55 7.28 -51.93 -0.38 0.17 16 32 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.38 10.32 7.80 -40.82 -0.32 10.00 16 35 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 36 H 0.08 0.89 8.11 -51.93 -0.42 0.47 16 37 H 0.08 0.94 8.04 -51.93 -0.42 0.53 16 38 H 0.07 0.89 7.66 -51.93 -0.40 0.49 16 39 H 0.07 0.85 7.77 -51.93 -0.40 0.45 16 40 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 41 H 0.09 0.21 7.86 -51.93 -0.41 -0.20 16 42 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 44 H 0.08 1.16 7.67 -51.93 -0.40 0.76 16 45 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 46 H 0.06 0.51 8.11 -51.93 -0.42 0.09 16 47 H 0.07 0.49 8.12 -51.93 -0.42 0.07 16 48 H 0.07 0.32 8.14 -51.92 -0.42 -0.10 16 49 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 50 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 51 H 0.07 1.36 7.99 -51.93 -0.41 0.95 16 52 H 0.08 1.81 8.03 -51.93 -0.42 1.39 16 LS Contribution 410.26 15.07 6.18 6.18 Total: -1.00 -34.99 410.26 -10.07 -45.06 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: -9.01 Total: 6.21 kcal Atomic # 6 Polarization: 1.30 SS G_CDS: -2.28 Total: -0.98 kcal Atomic # 7 Polarization: -63.26 SS G_CDS: -0.03 Total: -63.29 kcal Atomic # 8 Polarization: -11.10 SS G_CDS: 0.09 Total: -11.02 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -5.02 Total: 17.82 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -34.99 -10.07 -45.06 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271529371.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.215 kcal (2) G-P(sol) polarization free energy of solvation -34.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.063 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds