Wall clock time and date at job start Wed Apr 1 2020 05:35:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09008 * 109.47167 * 2 1 4 4 N 1.46491 * 109.47329 * 239.99795 * 2 1 3 5 5 C 1.36931 * 120.00411 * 85.00326 * 4 2 1 6 6 H 1.08001 * 120.00115 * 359.97438 * 5 4 2 7 7 C 1.38811 * 120.00457 * 180.02562 * 5 4 2 8 8 N 1.31621 * 119.99885 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00317 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47242 * 59.99777 * 9 7 5 11 11 H 1.48507 * 109.47026 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47093 * 299.99458 * 9 7 5 13 13 C 1.52999 * 109.46838 * 119.99214 * 2 1 3 14 14 H 1.09006 * 110.88251 * 63.88532 * 13 2 1 15 15 C 1.55150 * 111.01025 * 300.00430 * 13 2 1 16 16 C 1.54317 * 102.94509 * 206.38609 * 15 13 2 17 17 N 1.47016 * 107.27257 * 22.18903 * 16 15 13 18 18 C 1.34784 * 125.65078 * 181.02490 * 17 16 15 19 19 O 1.21569 * 119.99674 * 179.75231 * 18 17 16 20 20 C 1.47704 * 119.99658 * 0.02562 * 18 17 16 21 21 N 1.32208 * 126.68169 * 0.03166 * 20 18 17 22 22 N 1.28841 * 110.14985 * 179.97438 * 21 20 18 23 23 C 1.46501 * 124.97865 * 179.90623 * 22 21 20 24 24 C 1.34313 * 110.04510 * 359.94048 * 22 21 20 25 25 C 1.35582 * 107.21318 * 359.83391 * 24 22 21 26 26 C 1.50374 * 124.61969 * 180.02562 * 25 24 22 27 27 C 1.53473 * 108.28355 * 343.97285 * 26 25 24 28 28 C 1.53103 * 109.50719 * 49.48846 * 27 26 25 29 29 C 1.50709 * 128.90530 * 180.22021 * 24 22 21 30 30 C 1.47422 * 108.70287 * 1.29125 * 17 16 15 31 31 H 1.08996 * 109.47217 * 300.00790 * 1 2 3 32 32 H 1.09003 * 109.46979 * 60.00269 * 1 2 3 33 33 H 1.08998 * 109.47179 * 180.02562 * 1 2 3 34 34 H 0.97003 * 119.99717 * 264.99827 * 4 2 1 35 35 H 0.97003 * 120.00658 * 180.02562 * 8 7 5 36 36 H 1.09003 * 110.72057 * 88.01516 * 15 13 2 37 37 H 1.09001 * 110.86884 * 324.81933 * 15 13 2 38 38 H 1.09000 * 109.88145 * 262.77116 * 16 15 13 39 39 H 1.08998 * 110.01533 * 141.68044 * 16 15 13 40 40 H 1.08996 * 109.47487 * 90.02299 * 23 22 21 41 41 H 1.08997 * 109.47567 * 210.02567 * 23 22 21 42 42 H 1.09006 * 109.46989 * 330.02064 * 23 22 21 43 43 H 1.09006 * 109.70224 * 103.66810 * 26 25 24 44 44 H 1.09004 * 109.70759 * 224.23548 * 26 25 24 45 45 H 1.09003 * 109.47250 * 169.49997 * 27 26 25 46 46 H 1.09003 * 109.46670 * 289.48356 * 27 26 25 47 47 H 1.08997 * 109.44602 * 49.99213 * 28 27 26 48 48 H 1.09007 * 109.44584 * 169.92271 * 28 27 26 49 49 H 1.09003 * 109.69225 * 283.00539 * 29 24 22 50 50 H 1.09000 * 109.69725 * 43.58181 * 29 24 22 51 51 H 1.08996 * 110.37059 * 94.48400 * 30 17 16 52 52 H 1.09001 * 110.36609 * 216.80695 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1493 -0.0076 -2.3756 6 1 1.8921 1.0402 -2.4244 7 6 2.6115 -0.6621 -3.5091 8 7 2.9245 -1.9392 -3.4500 9 14 2.7894 0.2695 -5.1184 10 1 3.7447 1.3919 -4.9377 11 1 3.2985 -0.6491 -6.1684 12 1 1.4669 0.8061 -5.5285 13 6 2.0400 -0.7211 1.2494 14 1 1.7468 -1.7709 1.2389 15 6 1.5425 -0.0176 2.5396 16 6 2.6243 -0.3898 3.5753 17 7 3.8421 -0.7376 2.8287 18 6 5.0089 -1.1382 3.3716 19 8 5.9531 -1.4053 2.6540 20 6 5.1383 -1.2584 4.8381 21 7 4.2011 -1.0092 5.7367 22 7 4.6571 -1.2187 6.9234 23 6 3.8927 -1.0407 8.1604 24 6 5.9363 -1.6233 6.8602 25 6 6.2793 -1.6661 5.5492 26 6 7.6321 -2.0718 5.0329 27 6 8.6268 -2.0261 6.2008 28 6 8.0452 -2.7835 7.3975 29 6 6.8707 -1.9868 7.9854 30 6 3.5776 -0.5696 1.3882 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0276 0.0005 34 1 2.2491 -1.6318 -1.1524 35 1 3.2479 -2.3966 -4.2419 36 1 0.5700 -0.4071 2.8408 37 1 1.4974 1.0625 2.4003 38 1 2.2942 -1.2448 4.1652 39 1 2.8209 0.4587 4.2306 40 1 3.3910 -1.9742 8.4150 41 1 4.5686 -0.7595 8.9680 42 1 3.1497 -0.2558 8.0186 43 1 7.5837 -3.0838 4.6309 44 1 7.9498 -1.3810 4.2517 45 1 9.5648 -2.4912 5.8976 46 1 8.8099 -0.9889 6.4816 47 1 7.6980 -3.7642 7.0724 48 1 8.8157 -2.9055 8.1590 49 1 7.2350 -1.0798 8.4679 50 1 6.3459 -2.6052 8.7136 51 1 3.8952 0.4191 1.0569 52 1 4.0879 -1.3443 0.8159 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271529371.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:35:18 Heat of formation + Delta-G solvation = 23.561062 kcal Electronic energy + Delta-G solvation = -30984.810084 eV Core-core repulsion = 26984.703650 eV Total energy + Delta-G solvation = -4000.106434 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -43.85695 -40.99224 -39.02933 -37.86197 -36.77777 -34.79961 -34.22313 -32.07984 -31.25312 -30.81187 -30.04692 -29.85043 -28.04973 -25.93780 -25.26914 -24.50731 -23.11885 -22.84254 -22.56583 -21.09180 -20.30863 -19.87453 -19.10381 -18.02629 -17.63708 -17.51760 -17.16740 -16.52202 -16.34344 -15.77170 -15.59298 -15.42418 -15.12760 -14.73476 -14.58520 -14.50048 -14.35046 -14.24724 -14.01488 -13.93942 -13.68012 -13.54240 -13.36369 -13.32057 -13.13652 -12.90219 -12.83447 -12.66096 -12.40113 -12.25317 -12.01608 -11.81203 -11.75750 -11.73042 -11.67933 -11.59080 -11.52664 -11.36580 -11.10324 -10.91452 -10.12501 -9.74655 -9.53384 -8.98287 -7.91218 -5.19060 0.47013 1.06712 1.45838 1.49464 1.51517 1.55004 1.96962 2.27114 2.57396 3.19336 3.41535 3.51292 3.55261 3.67937 3.81135 3.84711 4.02212 4.06810 4.17100 4.23828 4.28578 4.30389 4.39569 4.41637 4.47521 4.56081 4.57959 4.64424 4.64553 4.68395 4.71533 4.75360 4.86379 4.89715 4.96662 4.96996 5.02408 5.08078 5.10634 5.14835 5.20651 5.24280 5.30422 5.34897 5.40772 5.45498 5.48303 5.54104 5.65135 5.91602 6.30570 6.42272 6.79713 7.07561 7.36159 8.13775 8.35468 9.32406 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016826 B = 0.002406 C = 0.002149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.655644 B =11636.163642 C =13023.454492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.180 3.820 3 H 0.046 0.954 4 N -0.738 5.738 5 C -0.232 4.232 6 H 0.077 0.923 7 C -0.081 4.081 8 N -0.972 5.972 9 Si 0.970 3.030 10 H -0.281 1.281 11 H -0.299 1.299 12 H -0.275 1.275 13 C -0.090 4.090 14 H 0.074 0.926 15 C -0.111 4.111 16 C 0.118 3.882 17 N -0.608 5.608 18 C 0.601 3.399 19 O -0.578 6.578 20 C -0.038 4.038 21 N -0.266 5.266 22 N -0.268 5.268 23 C 0.073 3.927 24 C 0.020 3.980 25 C -0.176 4.176 26 C -0.044 4.044 27 C -0.115 4.115 28 C -0.112 4.112 29 C -0.041 4.041 30 C 0.125 3.875 31 H 0.081 0.919 32 H 0.035 0.965 33 H 0.041 0.959 34 H 0.369 0.631 35 H 0.248 0.752 36 H 0.111 0.889 37 H 0.091 0.909 38 H 0.075 0.925 39 H 0.079 0.921 40 H 0.102 0.898 41 H 0.127 0.873 42 H 0.105 0.895 43 H 0.058 0.942 44 H 0.051 0.949 45 H 0.078 0.922 46 H 0.068 0.932 47 H 0.060 0.940 48 H 0.102 0.898 49 H 0.105 0.895 50 H 0.106 0.894 51 H 0.058 0.942 52 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.941 2.073 35.277 35.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.072 3.928 3 H 0.064 0.936 4 N -0.378 5.378 5 C -0.364 4.364 6 H 0.095 0.905 7 C -0.272 4.272 8 N -0.623 5.623 9 Si 0.799 3.201 10 H -0.207 1.207 11 H -0.225 1.225 12 H -0.201 1.201 13 C -0.110 4.110 14 H 0.092 0.908 15 C -0.149 4.149 16 C -0.004 4.004 17 N -0.341 5.341 18 C 0.390 3.610 19 O -0.457 6.457 20 C -0.194 4.194 21 N -0.104 5.104 22 N -0.056 5.056 23 C -0.065 4.065 24 C -0.106 4.106 25 C -0.186 4.186 26 C -0.082 4.082 27 C -0.152 4.152 28 C -0.150 4.150 29 C -0.079 4.079 30 C 0.003 3.997 31 H 0.100 0.900 32 H 0.054 0.946 33 H 0.061 0.939 34 H 0.201 0.799 35 H 0.057 0.943 36 H 0.129 0.871 37 H 0.109 0.891 38 H 0.094 0.906 39 H 0.097 0.903 40 H 0.121 0.879 41 H 0.145 0.855 42 H 0.123 0.877 43 H 0.077 0.923 44 H 0.070 0.930 45 H 0.097 0.903 46 H 0.086 0.914 47 H 0.079 0.921 48 H 0.121 0.879 49 H 0.123 0.877 50 H 0.124 0.876 51 H 0.077 0.923 52 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 2.277 2.446 35.043 35.202 hybrid contribution 1.029 -0.426 -2.116 2.391 sum 3.307 2.020 32.927 33.154 Atomic orbital electron populations 1.22266 0.96711 1.00998 1.01182 1.20400 0.93356 0.94668 0.84411 0.93553 1.42652 1.78510 1.10223 1.06390 1.19568 1.34469 0.94128 0.88229 0.90530 1.25542 1.03317 0.96863 1.01509 1.69825 1.52901 1.10308 1.29315 0.85261 0.77984 0.77239 0.79613 1.20711 1.22531 1.20116 1.22512 0.92051 1.00542 0.95910 0.90788 1.22741 0.98718 1.01870 0.91545 1.22150 0.82849 1.01108 0.94292 1.48487 1.12155 1.65095 1.08330 1.17060 0.81437 0.76666 0.85886 1.90757 1.39605 1.52846 1.62446 1.21229 0.94271 1.11559 0.92362 1.73835 1.25026 1.21063 0.90444 1.45637 1.09212 1.44497 1.06207 1.22665 0.97927 1.05795 0.80113 1.21625 0.87190 1.04703 0.97098 1.20162 0.97249 1.08578 0.92658 1.19937 0.89954 1.00191 0.98142 1.21649 0.97700 1.01546 0.94346 1.21625 0.97437 0.98258 0.97652 1.20469 0.93074 1.01962 0.92437 1.22100 0.97209 1.00293 0.80142 0.90019 0.94594 0.93946 0.79920 0.94294 0.87070 0.89060 0.90642 0.90261 0.87929 0.85519 0.87665 0.92349 0.93030 0.90328 0.91355 0.92149 0.87947 0.87686 0.87551 0.92330 0.94005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.07 9.27 71.98 0.67 -4.40 16 2 C 0.18 7.00 2.43 44.99 0.11 7.11 16 3 H 0.05 1.83 8.01 -2.38 -0.02 1.81 16 4 N -0.74 -38.09 4.97 -322.95 -1.61 -39.69 16 5 C -0.23 -13.19 9.93 84.03 0.83 -12.36 16 6 H 0.08 4.15 7.83 -2.91 -0.02 4.13 16 7 C -0.08 -4.80 5.50 84.86 0.47 -4.34 16 8 N -0.97 -62.36 13.06 21.65 0.28 -62.08 16 9 Si 0.97 48.09 29.55 68.60 2.03 50.12 16 10 H -0.28 -13.51 7.11 99.48 0.71 -12.81 16 11 H -0.30 -15.04 7.11 99.48 0.71 -14.33 16 12 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 13 C -0.09 -3.02 2.67 -9.33 -0.02 -3.05 16 14 H 0.07 2.61 8.14 -2.38 -0.02 2.59 16 15 C -0.11 -2.58 5.28 31.78 0.17 -2.42 16 16 C 0.12 3.04 5.55 86.73 0.48 3.52 16 17 N -0.61 -21.52 3.32 -814.94 -2.71 -24.23 16 18 C 0.60 23.55 7.86 86.74 0.68 24.23 16 19 O -0.58 -27.06 16.05 -3.93 -0.06 -27.13 16 20 C -0.04 -1.21 6.96 42.14 0.29 -0.92 16 21 N -0.27 -6.71 9.55 -48.62 -0.46 -7.17 16 22 N -0.27 -4.65 3.69 -356.28 -1.31 -5.97 16 23 C 0.07 0.37 11.17 127.77 1.43 1.79 16 24 C 0.02 0.37 6.71 41.57 0.28 0.65 16 25 C -0.18 -4.79 5.99 -20.03 -0.12 -4.91 16 26 C -0.04 -1.14 5.54 29.90 0.17 -0.98 16 27 C -0.11 -1.80 5.91 30.79 0.18 -1.62 16 28 C -0.11 -1.11 5.90 30.84 0.18 -0.93 16 29 C -0.04 -0.33 5.81 30.06 0.17 -0.16 16 30 C 0.13 4.94 6.24 86.93 0.54 5.48 16 31 H 0.08 2.02 7.28 -2.39 -0.02 2.00 16 32 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.37 20.94 7.80 -92.71 -0.72 20.22 16 35 H 0.25 15.56 8.31 -92.71 -0.77 14.79 16 36 H 0.11 1.99 8.11 -2.39 -0.02 1.97 16 37 H 0.09 1.93 8.04 -2.39 -0.02 1.91 16 38 H 0.08 1.86 7.66 -2.39 -0.02 1.84 16 39 H 0.08 1.88 7.77 -2.39 -0.02 1.86 16 40 H 0.10 0.22 8.14 -2.39 -0.02 0.20 16 41 H 0.13 -0.17 7.86 -2.39 -0.02 -0.19 16 42 H 0.10 0.42 8.14 -2.38 -0.02 0.40 16 43 H 0.06 1.63 8.14 -2.38 -0.02 1.61 16 44 H 0.05 1.62 7.67 -2.39 -0.02 1.60 16 45 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 46 H 0.07 1.01 8.11 -2.39 -0.02 0.99 16 47 H 0.06 0.73 8.12 -2.39 -0.02 0.71 16 48 H 0.10 0.47 8.14 -2.38 -0.02 0.45 16 49 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 50 H 0.11 0.31 8.14 -2.39 -0.02 0.29 16 51 H 0.06 2.41 7.99 -2.39 -0.02 2.39 16 52 H 0.04 1.98 8.03 -2.39 -0.02 1.96 16 Total: -1.00 -83.92 410.26 2.85 -81.07 By element: Atomic # 1 Polarization: 28.18 SS G_CDS: 0.18 Total: 28.36 kcal Atomic # 6 Polarization: 0.20 SS G_CDS: 6.51 Total: 6.71 kcal Atomic # 7 Polarization: -133.33 SS G_CDS: -5.81 Total: -139.14 kcal Atomic # 8 Polarization: -27.06 SS G_CDS: -0.06 Total: -27.13 kcal Atomic # 14 Polarization: 48.09 SS G_CDS: 2.03 Total: 50.12 kcal Total: -83.92 2.85 -81.07 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271529371.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.631 kcal (2) G-P(sol) polarization free energy of solvation -83.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.070 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds