Wall clock time and date at job start Wed Apr 1 2020 05:07:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08993 * 109.47184 * 2 1 4 4 C 1.53003 * 109.47099 * 119.99992 * 2 1 3 5 5 C 1.50706 * 109.46859 * 295.00149 * 4 2 1 6 6 O 1.21272 * 120.00096 * 0.02562 * 5 4 2 7 7 N 1.34774 * 119.99801 * 179.97438 * 5 4 2 8 8 C 1.46506 * 120.00121 * 180.02562 * 7 5 4 9 9 C 1.53003 * 109.47179 * 180.02562 * 8 7 5 10 10 H 1.09000 * 109.43330 * 59.93729 * 9 8 7 11 11 C 1.53147 * 109.43285 * 179.84863 * 9 8 7 12 12 C 1.53699 * 108.87288 * 66.17213 * 11 9 8 13 13 H 1.09004 * 112.58189 * 187.93035 * 12 11 9 14 14 C 1.54217 * 107.73052 * 312.05875 * 12 11 9 15 15 C 1.54315 * 104.78940 * 88.97745 * 14 12 11 16 16 C 1.54608 * 104.74750 * 359.82932 * 15 14 12 17 17 H 1.09000 * 112.18905 * 146.80139 * 16 15 14 18 18 C 1.53697 * 108.37139 * 271.10738 * 16 15 14 19 19 N 1.48290 * 107.27847 * 64.01140 * 12 11 9 20 20 C 1.36941 * 128.21340 * 107.43166 * 19 12 11 21 21 H 1.07998 * 119.99617 * 154.71890 * 20 19 12 22 22 C 1.38806 * 120.00042 * 334.72231 * 20 19 12 23 23 N 1.31627 * 120.00053 * 354.98821 * 22 20 19 24 24 Si 1.86797 * 120.00127 * 174.98377 * 22 20 19 25 25 H 1.48505 * 109.47173 * 180.02562 * 24 22 20 26 26 H 1.48497 * 109.47313 * 299.99809 * 24 22 20 27 27 H 1.48498 * 109.47073 * 60.00234 * 24 22 20 28 28 N 1.46499 * 109.47322 * 239.99745 * 2 1 3 29 29 C 1.36878 * 126.39683 * 120.00177 * 28 2 1 30 30 C 1.34674 * 106.81752 * 180.02562 * 29 28 2 31 31 N 1.34127 * 108.01740 * 0.02562 * 30 29 28 32 32 C 1.30499 * 109.25929 * 359.72336 * 31 30 29 33 33 H 1.09003 * 109.46818 * 59.99858 * 1 2 3 34 34 H 1.08993 * 109.47184 * 179.97438 * 1 2 3 35 35 H 1.09001 * 109.47061 * 299.99989 * 1 2 3 36 36 H 1.08994 * 109.47610 * 174.99999 * 4 2 1 37 37 H 1.09004 * 109.47282 * 54.99652 * 4 2 1 38 38 H 0.97001 * 120.00343 * 0.02562 * 7 5 4 39 39 H 1.08994 * 109.47081 * 59.99533 * 8 7 5 40 40 H 1.09004 * 109.46498 * 299.99989 * 8 7 5 41 41 H 1.08997 * 109.57120 * 306.35621 * 11 9 8 42 42 H 1.08992 * 109.57006 * 185.98959 * 11 9 8 43 43 H 1.09003 * 110.51048 * 330.07508 * 14 12 11 44 44 H 1.09000 * 110.22583 * 207.73490 * 14 12 11 45 45 H 1.09001 * 110.38452 * 241.01238 * 15 14 12 46 46 H 1.09001 * 110.38079 * 118.64765 * 15 14 12 47 47 H 1.08999 * 109.57312 * 167.84787 * 18 16 15 48 48 H 1.09009 * 109.56699 * 288.20288 * 18 16 15 49 49 H 0.97001 * 120.00413 * 179.97438 * 23 22 20 50 50 H 1.08002 * 126.59150 * 359.96371 * 29 28 2 51 51 H 1.07996 * 125.98912 * 179.97438 * 30 29 28 52 52 H 1.07996 * 125.65155 * 180.29367 * 32 31 30 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6412 0.0571 2.4766 6 8 1.0108 1.0869 2.3633 7 7 1.9843 -0.3918 3.7002 8 6 1.5962 0.3645 4.8934 9 6 2.1063 -0.3567 6.1427 10 1 3.1926 -0.4351 6.0980 11 6 1.7035 0.4366 7.3892 12 6 0.1725 0.4093 7.5225 13 1 -0.1909 1.0692 8.3103 14 6 -0.4252 0.7644 6.1460 15 6 -0.5599 -0.5876 5.4143 16 6 -0.0252 -1.6338 6.4192 17 1 -0.5446 -2.5884 6.3351 18 6 1.4901 -1.7794 6.2067 19 7 -0.2251 -1.0018 7.7457 20 6 -0.6757 -1.5823 8.9013 21 1 -1.2986 -2.4633 8.8557 22 6 -0.3318 -1.0383 10.1311 23 7 0.5063 -0.0251 10.1915 24 14 -1.0585 -1.7439 11.7006 25 1 -0.5366 -0.9915 12.8697 26 1 -2.5382 -1.6263 11.6575 27 1 -0.6789 -3.1744 11.8224 28 7 2.0184 -0.6906 -1.1961 29 6 2.8085 -0.1554 -2.1773 30 6 3.0183 -1.1295 -3.0833 31 7 2.3733 -2.2293 -2.6669 32 6 1.7767 -1.9755 -1.5343 33 1 -0.3633 0.5139 -0.8900 34 1 -0.3633 -1.0276 -0.0005 35 1 -0.3633 0.5138 0.8900 36 1 3.1262 -0.7995 1.2057 37 1 1.6053 -1.7198 1.2952 38 1 2.4882 -1.2157 3.7909 39 1 0.5100 0.4427 4.9366 40 1 2.0309 1.3631 4.8478 41 1 2.0431 1.4676 7.2914 42 1 2.1549 -0.0163 8.2718 43 1 0.2446 1.4274 5.5983 44 1 -1.4037 1.2288 6.2685 45 1 0.0437 -0.5898 4.5067 46 1 -1.6046 -0.7884 5.1770 47 1 1.9226 -2.3414 7.0344 48 1 1.6787 -2.3032 5.2695 49 1 0.7463 0.3553 11.0509 50 1 3.1896 0.8543 -2.2177 51 1 3.6027 -1.0404 -3.9871 52 1 1.1857 -2.6762 -0.9633 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001279237565.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:07:50 Heat of formation + Delta-G solvation = 142.864977 kcal Electronic energy + Delta-G solvation = -31783.001546 eV Core-core repulsion = 27788.068518 eV Total energy + Delta-G solvation = -3994.933028 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -42.33523 -41.31210 -39.40326 -35.97287 -34.77888 -32.89744 -31.53053 -31.22141 -30.71586 -29.85287 -29.44348 -28.41714 -26.39379 -23.96671 -23.39735 -23.17689 -21.59745 -21.01691 -20.74085 -20.15039 -19.43994 -18.83732 -17.82201 -17.03393 -16.88899 -15.98516 -15.97577 -15.51833 -15.03145 -14.80933 -14.52382 -14.19106 -14.02401 -13.92130 -13.59276 -13.32604 -13.14818 -13.02443 -12.76350 -12.70645 -12.26708 -12.00149 -11.83256 -11.75382 -11.62722 -11.57138 -11.41782 -11.26183 -10.89755 -10.83354 -10.59406 -10.19806 -10.17703 -10.05974 -9.90148 -9.78337 -9.69161 -9.50125 -9.41346 -9.24954 -8.74592 -8.62714 -8.25263 -6.74101 -5.85083 -3.23808 1.83016 2.40298 2.52790 2.97289 3.29690 3.34484 3.40013 3.40276 4.09198 4.36191 4.41875 4.49176 4.54351 4.68117 4.86546 5.04199 5.11755 5.15735 5.20571 5.25013 5.36352 5.38232 5.42791 5.48942 5.53355 5.55014 5.69482 5.75219 5.84207 5.90998 5.98466 6.03834 6.08049 6.11106 6.23007 6.34750 6.35957 6.50395 6.51251 6.57352 6.59549 6.68931 6.81326 6.90208 6.95037 7.01844 7.07977 7.47485 7.49122 7.60572 7.71714 7.86173 8.16548 8.21184 9.08158 9.69400 10.53583 11.28734 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.029584 B = 0.002187 C = 0.002160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.241564 B =12797.472988 C =12961.840625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.150 3.850 3 H 0.109 0.891 4 C -0.155 4.155 5 C 0.512 3.488 6 O -0.542 6.542 7 N -0.716 5.716 8 C 0.002 3.998 9 C -0.086 4.086 10 H 0.049 0.951 11 C -0.109 4.109 12 C 0.187 3.813 13 H 0.094 0.906 14 C -0.173 4.173 15 C -0.161 4.161 16 C 0.149 3.851 17 H 0.063 0.937 18 C -0.121 4.121 19 N -0.581 5.581 20 C -0.230 4.230 21 H 0.069 0.931 22 C 0.003 3.997 23 N -0.906 5.906 24 Si 0.908 3.092 25 H -0.291 1.291 26 H -0.285 1.285 27 H -0.284 1.284 28 N -0.453 5.453 29 C -0.055 4.055 30 C -0.034 4.034 31 N -0.498 5.498 32 C 0.181 3.819 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.101 0.899 36 H 0.098 0.902 37 H 0.102 0.898 38 H 0.395 0.605 39 H 0.196 0.804 40 H 0.050 0.950 41 H 0.038 0.962 42 H 0.086 0.914 43 H 0.089 0.911 44 H 0.054 0.946 45 H 0.093 0.907 46 H 0.051 0.949 47 H 0.065 0.935 48 H 0.039 0.961 49 H 0.254 0.746 50 H 0.172 0.828 51 H 0.167 0.833 52 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.544 0.442 -19.032 19.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.046 3.954 3 H 0.127 0.873 4 C -0.196 4.196 5 C 0.297 3.703 6 O -0.421 6.421 7 N -0.367 5.367 8 C -0.116 4.116 9 C -0.105 4.105 10 H 0.068 0.932 11 C -0.149 4.149 12 C 0.080 3.920 13 H 0.112 0.888 14 C -0.211 4.211 15 C -0.199 4.199 16 C 0.041 3.959 17 H 0.081 0.919 18 C -0.161 4.161 19 N -0.303 5.303 20 C -0.359 4.359 21 H 0.087 0.913 22 C -0.195 4.195 23 N -0.551 5.551 24 Si 0.738 3.262 25 H -0.216 1.216 26 H -0.211 1.211 27 H -0.211 1.211 28 N -0.136 5.136 29 C -0.189 4.189 30 C -0.182 4.182 31 N -0.216 5.216 32 C -0.101 4.101 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.120 0.880 36 H 0.117 0.883 37 H 0.120 0.880 38 H 0.229 0.771 39 H 0.211 0.789 40 H 0.068 0.932 41 H 0.057 0.943 42 H 0.105 0.895 43 H 0.106 0.894 44 H 0.073 0.927 45 H 0.111 0.889 46 H 0.070 0.930 47 H 0.083 0.917 48 H 0.057 0.943 49 H 0.064 0.936 50 H 0.189 0.811 51 H 0.185 0.815 52 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 4.031 0.529 -19.070 19.498 hybrid contribution 0.396 -0.010 1.390 1.446 sum 4.427 0.519 -17.679 18.233 Atomic orbital electron populations 1.22310 0.92183 1.03150 1.04866 1.21164 0.96389 0.96819 0.80984 0.87311 1.22034 1.03720 1.01084 0.92767 1.20088 0.80017 0.85712 0.84446 1.90687 1.40253 1.24551 1.86590 1.46401 1.56511 1.27482 1.06286 1.25315 1.10382 0.93560 0.82391 1.21627 0.98056 0.96159 0.94670 0.93210 1.22039 0.99725 0.97005 0.96142 1.21187 0.90951 0.87836 0.92046 0.88800 1.23470 1.01173 0.96520 0.99973 1.23390 1.00524 0.96498 0.99486 1.21532 0.92311 0.94692 0.87377 0.91918 1.22512 0.99081 0.95177 0.99325 1.45043 1.75983 1.04120 1.05105 1.18848 1.23909 1.10806 0.82296 0.91308 1.25033 0.97909 0.98990 0.97584 1.69876 1.35409 1.25672 1.24125 0.86288 0.78629 0.78412 0.82883 1.21635 1.21116 1.21053 1.45819 1.37870 1.11347 1.18529 1.22784 1.02327 1.01329 0.92416 1.22298 1.04785 0.89705 1.01434 1.70305 1.12522 1.28289 1.10468 1.24897 1.03914 0.85448 0.95843 0.91939 0.92099 0.88015 0.88323 0.88009 0.77088 0.78879 0.93186 0.94308 0.89495 0.89378 0.92723 0.88929 0.93039 0.91670 0.94254 0.93598 0.81061 0.81531 0.78246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.39 8.99 37.16 0.33 -1.05 16 2 C 0.15 1.19 2.70 -67.93 -0.18 1.01 16 3 H 0.11 0.92 7.90 -51.93 -0.41 0.51 16 4 C -0.16 -1.16 5.17 -27.88 -0.14 -1.31 16 5 C 0.51 5.57 7.30 -10.98 -0.08 5.49 16 6 O -0.54 -7.58 13.96 5.56 0.08 -7.50 16 7 N -0.72 -7.99 4.39 -60.29 -0.26 -8.26 16 8 C 0.00 0.03 2.68 -4.04 -0.01 0.02 16 9 C -0.09 -1.38 2.80 -89.39 -0.25 -1.63 16 10 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 11 C -0.11 -2.16 5.19 -26.29 -0.14 -2.29 16 12 C 0.19 4.02 3.07 -65.94 -0.20 3.81 16 13 H 0.09 2.34 6.94 -51.93 -0.36 1.98 16 14 C -0.17 -3.08 5.70 -25.41 -0.14 -3.23 16 15 C -0.16 -2.65 5.72 -25.20 -0.14 -2.80 16 16 C 0.15 2.80 4.28 -65.73 -0.28 2.51 16 17 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 18 C -0.12 -2.00 5.42 -25.22 -0.14 -2.14 16 19 N -0.58 -13.47 2.78 -153.00 -0.43 -13.90 16 20 C -0.23 -6.00 10.34 -15.06 -0.16 -6.16 16 21 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 22 C 0.00 0.08 5.43 -17.43 -0.09 -0.01 16 23 N -0.91 -24.60 10.33 55.49 0.57 -24.03 16 24 Si 0.91 21.06 29.56 -169.99 -5.02 16.03 16 25 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 26 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 27 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 28 N -0.45 -3.87 2.62 -111.46 -0.29 -4.16 16 29 C -0.06 -0.47 11.54 -16.56 -0.19 -0.66 16 30 C -0.03 -0.34 11.87 -17.81 -0.21 -0.55 16 31 N -0.50 -5.81 11.25 -14.67 -0.17 -5.97 16 32 C 0.18 1.70 11.65 -90.37 -1.05 0.65 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.44 7.95 -51.93 -0.41 0.03 16 35 H 0.10 1.03 5.95 -51.93 -0.31 0.72 16 36 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.10 0.60 8.08 -51.93 -0.42 0.18 16 38 H 0.39 3.66 7.33 -40.82 -0.30 3.36 16 39 H 0.20 2.97 1.12 -165.82 -0.19 2.79 16 40 H 0.05 0.76 8.00 -51.93 -0.42 0.35 16 41 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.09 2.03 7.36 -51.93 -0.38 1.65 16 43 H 0.09 1.45 4.83 -51.93 -0.25 1.20 16 44 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 45 H 0.09 1.35 3.96 -51.93 -0.21 1.15 16 46 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 47 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 48 H 0.04 0.52 6.76 -51.92 -0.35 0.17 16 49 H 0.25 6.80 8.31 -40.82 -0.34 6.46 16 50 H 0.17 1.02 8.06 -52.49 -0.42 0.59 16 51 H 0.17 1.26 8.06 -52.49 -0.42 0.83 16 52 H 0.20 1.31 8.06 -52.49 -0.42 0.89 16 LS Contribution 387.70 15.07 5.84 5.84 Total: -1.00 -30.35 387.70 -10.96 -41.31 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: -8.20 Total: 8.97 kcal Atomic # 6 Polarization: -5.25 SS G_CDS: -3.09 Total: -8.34 kcal Atomic # 7 Polarization: -55.75 SS G_CDS: -0.57 Total: -56.32 kcal Atomic # 8 Polarization: -7.58 SS G_CDS: 0.08 Total: -7.50 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -30.35 -10.96 -41.31 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279237565.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.178 kcal (2) G-P(sol) polarization free energy of solvation -30.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 153.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 142.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds