Wall clock time and date at job start Wed Apr 1 2020 05:07:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08993 * 109.47184 * 2 1 4 4 C 1.53003 * 109.47099 * 119.99992 * 2 1 3 5 5 C 1.50706 * 109.46859 * 295.00149 * 4 2 1 6 6 O 1.21272 * 120.00096 * 0.02562 * 5 4 2 7 7 N 1.34774 * 119.99801 * 179.97438 * 5 4 2 8 8 C 1.46506 * 120.00121 * 180.02562 * 7 5 4 9 9 C 1.53003 * 109.47179 * 180.02562 * 8 7 5 10 10 H 1.09000 * 109.43330 * 59.93729 * 9 8 7 11 11 C 1.53147 * 109.43285 * 179.84863 * 9 8 7 12 12 C 1.53699 * 108.87288 * 66.17213 * 11 9 8 13 13 H 1.09004 * 112.58189 * 187.93035 * 12 11 9 14 14 C 1.54217 * 107.73052 * 312.05875 * 12 11 9 15 15 C 1.54315 * 104.78940 * 88.97745 * 14 12 11 16 16 C 1.54608 * 104.74750 * 359.82932 * 15 14 12 17 17 H 1.09000 * 112.18905 * 146.80139 * 16 15 14 18 18 C 1.53697 * 108.37139 * 271.10738 * 16 15 14 19 19 N 1.48290 * 107.27847 * 64.01140 * 12 11 9 20 20 C 1.36941 * 128.21340 * 107.43166 * 19 12 11 21 21 H 1.07998 * 119.99617 * 154.71890 * 20 19 12 22 22 C 1.38806 * 120.00042 * 334.72231 * 20 19 12 23 23 N 1.31627 * 120.00053 * 354.98821 * 22 20 19 24 24 Si 1.86797 * 120.00127 * 174.98377 * 22 20 19 25 25 H 1.48505 * 109.47173 * 180.02562 * 24 22 20 26 26 H 1.48497 * 109.47313 * 299.99809 * 24 22 20 27 27 H 1.48498 * 109.47073 * 60.00234 * 24 22 20 28 28 N 1.46499 * 109.47322 * 239.99745 * 2 1 3 29 29 C 1.36878 * 126.39683 * 120.00177 * 28 2 1 30 30 C 1.34674 * 106.81752 * 180.02562 * 29 28 2 31 31 N 1.34127 * 108.01740 * 0.02562 * 30 29 28 32 32 C 1.30499 * 109.25929 * 359.72336 * 31 30 29 33 33 H 1.09003 * 109.46818 * 59.99858 * 1 2 3 34 34 H 1.08993 * 109.47184 * 179.97438 * 1 2 3 35 35 H 1.09001 * 109.47061 * 299.99989 * 1 2 3 36 36 H 1.08994 * 109.47610 * 174.99999 * 4 2 1 37 37 H 1.09004 * 109.47282 * 54.99652 * 4 2 1 38 38 H 0.97001 * 120.00343 * 0.02562 * 7 5 4 39 39 H 1.08994 * 109.47081 * 59.99533 * 8 7 5 40 40 H 1.09004 * 109.46498 * 299.99989 * 8 7 5 41 41 H 1.08997 * 109.57120 * 306.35621 * 11 9 8 42 42 H 1.08992 * 109.57006 * 185.98959 * 11 9 8 43 43 H 1.09003 * 110.51048 * 330.07508 * 14 12 11 44 44 H 1.09000 * 110.22583 * 207.73490 * 14 12 11 45 45 H 1.09001 * 110.38452 * 241.01238 * 15 14 12 46 46 H 1.09001 * 110.38079 * 118.64765 * 15 14 12 47 47 H 1.08999 * 109.57312 * 167.84787 * 18 16 15 48 48 H 1.09009 * 109.56699 * 288.20288 * 18 16 15 49 49 H 0.97001 * 120.00413 * 179.97438 * 23 22 20 50 50 H 1.08002 * 126.59150 * 359.96371 * 29 28 2 51 51 H 1.07996 * 125.98912 * 179.97438 * 30 29 28 52 52 H 1.07996 * 125.65155 * 180.29367 * 32 31 30 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6412 0.0571 2.4766 6 8 1.0108 1.0869 2.3633 7 7 1.9843 -0.3918 3.7002 8 6 1.5962 0.3645 4.8934 9 6 2.1063 -0.3567 6.1427 10 1 3.1926 -0.4351 6.0980 11 6 1.7035 0.4366 7.3892 12 6 0.1725 0.4093 7.5225 13 1 -0.1909 1.0692 8.3103 14 6 -0.4252 0.7644 6.1460 15 6 -0.5599 -0.5876 5.4143 16 6 -0.0252 -1.6338 6.4192 17 1 -0.5446 -2.5884 6.3351 18 6 1.4901 -1.7794 6.2067 19 7 -0.2251 -1.0018 7.7457 20 6 -0.6757 -1.5823 8.9013 21 1 -1.2986 -2.4633 8.8557 22 6 -0.3318 -1.0383 10.1311 23 7 0.5063 -0.0251 10.1915 24 14 -1.0585 -1.7439 11.7006 25 1 -0.5366 -0.9915 12.8697 26 1 -2.5382 -1.6263 11.6575 27 1 -0.6789 -3.1744 11.8224 28 7 2.0184 -0.6906 -1.1961 29 6 2.8085 -0.1554 -2.1773 30 6 3.0183 -1.1295 -3.0833 31 7 2.3733 -2.2293 -2.6669 32 6 1.7767 -1.9755 -1.5343 33 1 -0.3633 0.5139 -0.8900 34 1 -0.3633 -1.0276 -0.0005 35 1 -0.3633 0.5138 0.8900 36 1 3.1262 -0.7995 1.2057 37 1 1.6053 -1.7198 1.2952 38 1 2.4882 -1.2157 3.7909 39 1 0.5100 0.4427 4.9366 40 1 2.0309 1.3631 4.8478 41 1 2.0431 1.4676 7.2914 42 1 2.1549 -0.0163 8.2718 43 1 0.2446 1.4274 5.5983 44 1 -1.4037 1.2288 6.2685 45 1 0.0437 -0.5898 4.5067 46 1 -1.6046 -0.7884 5.1770 47 1 1.9226 -2.3414 7.0344 48 1 1.6787 -2.3032 5.2695 49 1 0.7463 0.3553 11.0509 50 1 3.1896 0.8543 -2.2177 51 1 3.6027 -1.0404 -3.9871 52 1 1.1857 -2.6762 -0.9633 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001279237565.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:07:45 Heat of formation + Delta-G solvation = 126.724355 kcal Electronic energy + Delta-G solvation = -31783.701456 eV Core-core repulsion = 27788.068518 eV Total energy + Delta-G solvation = -3995.632938 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 3.35 seconds Orbital eigenvalues (eV) -42.99599 -42.63609 -40.38645 -36.76147 -35.99204 -34.51559 -32.91445 -32.32988 -31.93153 -31.35532 -30.13289 -29.31273 -27.76746 -25.38310 -24.80152 -24.18492 -22.31459 -22.14169 -21.83837 -21.05344 -20.78906 -20.35139 -18.79464 -18.35978 -17.88883 -17.18894 -16.86525 -16.60594 -16.24108 -15.97170 -15.55122 -15.44932 -14.79896 -14.67427 -14.52642 -14.50252 -14.31596 -14.17573 -14.05809 -13.77565 -13.64649 -13.28476 -13.12363 -13.04279 -12.94781 -12.75242 -12.60675 -12.49539 -12.43743 -12.26619 -12.19157 -11.97898 -11.47397 -11.26862 -10.98243 -10.93582 -10.87986 -10.75542 -10.71531 -10.54891 -10.44508 -9.43385 -9.39375 -8.58992 -7.84671 -5.22764 1.19756 1.47117 1.48072 1.54088 1.69708 1.74930 2.28601 2.45382 2.51313 3.34295 3.48416 3.63333 3.74873 3.87638 3.92994 3.95315 4.00819 4.07905 4.10477 4.24134 4.27333 4.33291 4.42316 4.50466 4.57509 4.59236 4.62976 4.64609 4.76097 4.78116 4.83643 4.86367 4.93561 4.93585 5.05294 5.07065 5.13661 5.22129 5.26484 5.34736 5.41867 5.44382 5.53429 5.58170 5.62026 5.65278 5.79128 5.88194 5.96370 6.33054 6.33239 6.65687 7.12917 7.20554 7.33638 7.78173 8.63705 9.27574 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.029584 B = 0.002187 C = 0.002160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.241564 B =12797.472988 C =12961.840625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.154 3.846 3 H 0.104 0.896 4 C -0.144 4.144 5 C 0.515 3.485 6 O -0.573 6.573 7 N -0.711 5.711 8 C 0.016 3.984 9 C -0.075 4.075 10 H 0.065 0.935 11 C -0.103 4.103 12 C 0.181 3.819 13 H 0.047 0.953 14 C -0.164 4.164 15 C -0.146 4.146 16 C 0.139 3.861 17 H 0.063 0.937 18 C -0.113 4.113 19 N -0.605 5.605 20 C -0.239 4.239 21 H 0.067 0.933 22 C -0.050 4.050 23 N -0.928 5.928 24 Si 0.966 3.034 25 H -0.297 1.297 26 H -0.282 1.282 27 H -0.279 1.279 28 N -0.450 5.450 29 C -0.054 4.054 30 C -0.057 4.057 31 N -0.538 5.538 32 C 0.178 3.822 33 H 0.057 0.943 34 H 0.073 0.927 35 H 0.085 0.915 36 H 0.114 0.886 37 H 0.126 0.874 38 H 0.409 0.591 39 H 0.185 0.815 40 H 0.045 0.955 41 H 0.045 0.955 42 H 0.043 0.957 43 H 0.108 0.892 44 H 0.048 0.952 45 H 0.121 0.879 46 H 0.054 0.946 47 H 0.036 0.964 48 H 0.084 0.916 49 H 0.246 0.754 50 H 0.195 0.805 51 H 0.179 0.821 52 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.056 -0.495 -21.437 22.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.051 3.949 3 H 0.122 0.878 4 C -0.185 4.185 5 C 0.302 3.698 6 O -0.453 6.453 7 N -0.363 5.363 8 C -0.104 4.104 9 C -0.094 4.094 10 H 0.084 0.916 11 C -0.143 4.143 12 C 0.074 3.926 13 H 0.066 0.934 14 C -0.202 4.202 15 C -0.184 4.184 16 C 0.033 3.967 17 H 0.081 0.919 18 C -0.152 4.152 19 N -0.327 5.327 20 C -0.368 4.368 21 H 0.085 0.915 22 C -0.245 4.245 23 N -0.574 5.574 24 Si 0.795 3.205 25 H -0.223 1.223 26 H -0.209 1.209 27 H -0.205 1.205 28 N -0.133 5.133 29 C -0.188 4.188 30 C -0.204 4.204 31 N -0.256 5.256 32 C -0.104 4.104 33 H 0.076 0.924 34 H 0.092 0.908 35 H 0.103 0.897 36 H 0.132 0.868 37 H 0.145 0.855 38 H 0.245 0.755 39 H 0.200 0.800 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.062 0.938 43 H 0.125 0.875 44 H 0.067 0.933 45 H 0.138 0.862 46 H 0.073 0.927 47 H 0.055 0.945 48 H 0.102 0.898 49 H 0.055 0.945 50 H 0.212 0.788 51 H 0.196 0.804 52 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 4.552 -0.434 -21.515 21.995 hybrid contribution 0.215 0.303 2.092 2.124 sum 4.767 -0.131 -19.423 20.000 Atomic orbital electron populations 1.22242 0.92450 1.03641 1.03795 1.21101 0.96077 0.96652 0.81032 0.87776 1.21980 1.04735 1.01401 0.90353 1.20580 0.78979 0.85325 0.84930 1.90698 1.41524 1.26051 1.87005 1.46199 1.56866 1.27786 1.05465 1.24800 1.09356 0.93514 0.82722 1.21464 0.98981 0.95342 0.93627 0.91613 1.21842 0.98197 0.97729 0.96562 1.21105 0.92242 0.86567 0.92678 0.93449 1.23424 1.00966 0.97792 0.98023 1.23319 1.01211 0.94388 0.99474 1.21796 0.94094 0.95147 0.85664 0.91914 1.22394 0.96884 0.95510 1.00433 1.45251 1.76287 1.05314 1.05882 1.19124 1.23460 1.10476 0.83757 0.91526 1.25698 0.98915 0.99772 1.00148 1.70059 1.36763 1.26796 1.23811 0.85367 0.77826 0.77755 0.79564 1.22320 1.20880 1.20479 1.45832 1.37688 1.11168 1.18564 1.23174 1.01672 1.02050 0.91864 1.22638 1.05424 0.89841 1.02473 1.70278 1.13918 1.29557 1.11893 1.25375 1.03552 0.86014 0.95497 0.92367 0.90843 0.89679 0.86829 0.85547 0.75484 0.79994 0.93688 0.93654 0.93785 0.87456 0.93333 0.86174 0.92691 0.94534 0.89752 0.94521 0.78821 0.80410 0.75870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.25 8.99 71.98 0.65 -1.60 16 2 C 0.15 1.94 2.70 44.99 0.12 2.06 16 3 H 0.10 1.45 7.90 -2.39 -0.02 1.43 16 4 C -0.14 -1.51 5.17 29.85 0.15 -1.36 16 5 C 0.52 9.13 7.30 87.66 0.64 9.77 16 6 O -0.57 -14.27 13.96 -3.01 -0.04 -14.31 16 7 N -0.71 -12.79 4.39 -463.05 -2.03 -14.82 16 8 C 0.02 0.41 2.68 86.38 0.23 0.64 16 9 C -0.08 -2.26 2.80 -10.00 -0.03 -2.29 16 10 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 11 C -0.10 -4.14 5.19 30.88 0.16 -3.98 16 12 C 0.18 7.99 3.07 45.29 0.14 8.13 16 13 H 0.05 2.51 6.94 -2.39 -0.02 2.49 16 14 C -0.16 -5.71 5.70 31.45 0.18 -5.54 16 15 C -0.15 -4.48 5.72 31.59 0.18 -4.30 16 16 C 0.14 5.06 4.28 45.43 0.19 5.25 16 17 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 18 C -0.11 -3.48 5.42 31.57 0.17 -3.31 16 19 N -0.61 -28.54 2.78 -637.96 -1.77 -30.31 16 20 C -0.24 -12.76 10.34 84.03 0.87 -11.90 16 21 H 0.07 3.49 7.83 -2.91 -0.02 3.47 16 22 C -0.05 -2.72 5.43 84.86 0.46 -2.26 16 23 N -0.93 -52.80 10.33 21.65 0.22 -52.58 16 24 Si 0.97 44.50 29.56 68.60 2.03 46.53 16 25 H -0.30 -13.86 7.11 99.48 0.71 -13.15 16 26 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 27 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 28 N -0.45 -6.30 2.62 -506.56 -1.33 -7.63 16 29 C -0.05 -0.79 11.54 83.09 0.96 0.17 16 30 C -0.06 -1.02 11.87 83.52 0.99 -0.03 16 31 N -0.54 -11.59 11.25 -200.31 -2.25 -13.85 16 32 C 0.18 2.83 11.65 180.26 2.10 4.93 16 33 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.07 0.81 7.95 -2.39 -0.02 0.79 16 35 H 0.08 1.52 5.95 -2.39 -0.01 1.51 16 36 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.13 0.79 8.08 -2.38 -0.02 0.77 16 38 H 0.41 5.41 7.33 -92.71 -0.68 4.73 16 39 H 0.18 5.09 1.12 -109.37 -0.12 4.96 16 40 H 0.04 1.24 8.00 -2.38 -0.02 1.22 16 41 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 42 H 0.04 2.13 7.36 -2.39 -0.02 2.12 16 43 H 0.11 3.35 4.83 -2.39 -0.01 3.34 16 44 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 45 H 0.12 3.05 3.96 -2.39 -0.01 3.04 16 46 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 47 H 0.04 1.34 8.14 -2.39 -0.02 1.33 16 48 H 0.08 1.86 6.76 -2.38 -0.02 1.84 16 49 H 0.25 13.81 8.31 -92.71 -0.77 13.04 16 50 H 0.19 1.74 8.06 -2.91 -0.02 1.72 16 51 H 0.18 2.47 8.06 -2.91 -0.02 2.45 16 52 H 0.23 2.11 8.06 -2.91 -0.02 2.08 16 Total: -1.00 -69.54 387.70 3.13 -66.41 By element: Atomic # 1 Polarization: 26.05 SS G_CDS: 0.14 Total: 26.19 kcal Atomic # 6 Polarization: -13.79 SS G_CDS: 8.17 Total: -5.62 kcal Atomic # 7 Polarization: -112.03 SS G_CDS: -7.16 Total: -119.19 kcal Atomic # 8 Polarization: -14.27 SS G_CDS: -0.04 Total: -14.31 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -69.54 3.13 -66.41 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279237565.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 193.134 kcal (2) G-P(sol) polarization free energy of solvation -69.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.410 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.35 seconds