Wall clock time and date at job start Wed Apr 1 2020 05:05:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09000 * 109.46756 * 2 1 4 4 C 1.52997 * 109.46675 * 119.99752 * 2 1 3 5 5 C 1.50701 * 109.47248 * 295.00169 * 4 2 1 6 6 O 1.21283 * 120.00208 * 0.02562 * 5 4 2 7 7 N 1.34781 * 119.99967 * 179.72692 * 5 4 2 8 8 C 1.46496 * 119.99853 * 180.27385 * 7 5 4 9 9 C 1.53005 * 115.54889 * 179.91216 * 8 7 5 10 10 C 1.53041 * 109.45945 * 85.61442 * 9 8 7 11 11 C 1.53188 * 109.31059 * 178.60512 * 10 9 8 12 12 N 1.46920 * 108.77036 * 54.65187 * 11 10 9 13 13 C 1.36935 * 120.63403 * 126.36597 * 12 11 10 14 14 H 1.08001 * 120.00205 * 207.70492 * 13 12 11 15 15 C 1.38812 * 120.00229 * 27.69018 * 13 12 11 16 16 N 1.31625 * 119.99627 * 17.36285 * 15 13 12 17 17 Si 1.86800 * 120.00541 * 197.35435 * 15 13 12 18 18 H 1.48496 * 109.46798 * 60.00507 * 17 15 13 19 19 H 1.48498 * 109.47365 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47127 * 300.00439 * 17 15 13 21 21 C 1.46928 * 118.73989 * 306.38349 * 12 11 10 22 22 C 1.53037 * 109.45822 * 325.55722 * 9 8 7 23 23 C 1.53006 * 117.49896 * 34.20772 * 8 7 5 24 24 C 1.53003 * 117.50186 * 325.58394 * 8 7 5 25 25 N 1.46498 * 109.47098 * 239.99635 * 2 1 3 26 26 C 1.34941 * 126.04105 * 325.00558 * 25 2 1 27 27 C 1.35316 * 107.74880 * 179.97438 * 26 25 2 28 28 C 1.39873 * 107.91747 * 359.97438 * 27 26 25 29 29 N 1.30841 * 108.20138 * 359.74505 * 28 27 26 30 30 H 1.09000 * 109.46756 * 179.97438 * 1 2 3 31 31 H 1.08991 * 109.47365 * 300.00253 * 1 2 3 32 32 H 1.09004 * 109.46453 * 60.00408 * 1 2 3 33 33 H 1.08996 * 109.47227 * 175.00360 * 4 2 1 34 34 H 1.08997 * 109.47178 * 55.00243 * 4 2 1 35 35 H 0.96994 * 119.99704 * 0.27250 * 7 5 4 36 36 H 1.08998 * 109.45723 * 205.58195 * 9 8 7 37 37 H 1.09006 * 109.49266 * 298.56111 * 10 9 8 38 38 H 1.08994 * 109.50035 * 58.66067 * 10 9 8 39 39 H 1.09007 * 109.59641 * 294.85906 * 11 10 9 40 40 H 1.09005 * 109.58193 * 174.43736 * 11 10 9 41 41 H 0.96996 * 119.99954 * 179.97438 * 16 15 13 42 42 H 1.08997 * 109.58492 * 293.82349 * 21 12 11 43 43 H 1.08998 * 109.59098 * 173.39478 * 21 12 11 44 44 H 1.08999 * 109.50196 * 301.33339 * 22 9 8 45 45 H 1.09000 * 109.49992 * 61.40011 * 22 9 8 46 46 H 1.08996 * 117.49990 * 359.97438 * 23 8 7 47 47 H 1.09001 * 117.49826 * 145.02239 * 23 8 7 48 48 H 1.09001 * 117.49645 * 214.97771 * 24 8 7 49 49 H 1.08996 * 117.49752 * 359.97438 * 24 8 7 50 50 H 1.08006 * 126.12632 * 359.97438 * 26 25 2 51 51 H 1.07998 * 126.04338 * 179.97438 * 27 26 25 52 52 H 1.07998 * 125.89673 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6412 0.0571 2.4766 6 8 1.0108 1.0870 2.3633 7 7 1.9799 -0.3944 3.7005 8 6 1.5871 0.3591 4.8938 9 6 2.0227 -0.2466 6.2297 10 6 3.4459 0.2109 6.5570 11 6 3.8655 -0.3690 7.9114 12 7 3.6944 -1.8277 7.8745 13 6 4.7320 -2.6604 8.1986 14 1 4.7839 -3.6505 7.7702 15 6 5.7173 -2.2320 9.0775 16 7 5.4984 -1.1935 9.8561 17 14 7.3538 -3.1293 9.1556 18 1 8.0117 -3.0756 7.8255 19 1 8.2266 -2.4802 10.1666 20 1 7.1239 -4.5459 9.5373 21 6 2.3887 -2.3761 7.4830 22 6 1.9855 -1.7735 6.1335 23 6 0.2463 1.0951 4.8550 24 6 1.5549 1.8850 4.7870 25 7 2.0184 -0.6907 -1.1961 26 6 1.4403 -1.7559 -1.7895 27 6 2.1963 -2.0923 -2.8601 28 6 3.2730 -1.2018 -2.9236 29 7 3.1642 -0.3575 -1.9299 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3632 0.5138 -0.8901 33 1 3.1263 -0.7994 1.2058 34 1 1.6054 -1.7197 1.2952 35 1 2.4838 -1.2183 3.7911 36 1 1.3449 0.0844 7.0166 37 1 4.1282 -0.1411 5.7832 38 1 3.4768 1.2995 6.6022 39 1 3.2408 0.0525 8.6990 40 1 4.9112 -0.1284 8.1036 41 1 6.1867 -0.8943 10.4705 42 1 1.6436 -2.1183 8.2355 43 1 2.4599 -3.4600 7.3925 44 1 0.9768 -2.0975 5.8773 45 1 2.6812 -2.1065 5.3633 46 1 -0.3434 1.0190 3.9414 47 1 -0.3259 1.1478 5.7813 48 1 1.8435 2.4574 5.6686 49 1 1.8263 2.3283 3.8290 50 1 0.5362 -2.2512 -1.4675 51 1 2.0026 -2.9048 -3.5447 52 1 4.0562 -1.2071 -3.6672 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001279368204.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:05:42 Heat of formation + Delta-G solvation = 73.713424 kcal Electronic energy + Delta-G solvation = -31005.481283 eV Core-core repulsion = 27007.549619 eV Total energy + Delta-G solvation = -3997.931664 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.19764 -41.57207 -39.56762 -37.68806 -36.15790 -34.56662 -34.16203 -32.09322 -31.45760 -31.22287 -30.66534 -28.92547 -27.37191 -24.80395 -24.22445 -24.07346 -22.95216 -22.14183 -21.95553 -21.25102 -20.70566 -20.20193 -18.82992 -18.63142 -17.79698 -16.89441 -16.75751 -16.52610 -16.07670 -15.70603 -15.62885 -15.30721 -15.02685 -14.97410 -14.76165 -14.69244 -14.53333 -14.35572 -14.08005 -13.90948 -13.81921 -13.53822 -13.10775 -13.01510 -12.92186 -12.65940 -12.54497 -12.50254 -12.32960 -12.22820 -12.04735 -11.93483 -11.90951 -11.71953 -11.58144 -11.53413 -11.13261 -10.93886 -10.64688 -10.51438 -10.37731 -9.55072 -9.50840 -8.66528 -7.86315 -5.30706 0.99473 1.44903 1.46757 1.49095 1.51014 1.55381 1.99088 2.18621 2.51829 2.98176 3.27904 3.42695 3.58380 3.60636 3.65287 3.73787 3.93317 4.00600 4.04000 4.10340 4.14395 4.25268 4.36137 4.42795 4.47616 4.49489 4.57148 4.66884 4.74501 4.76004 4.80692 4.83943 4.84947 4.94040 4.97743 5.04229 5.06883 5.18277 5.18885 5.24429 5.26090 5.26817 5.36873 5.39084 5.52562 5.62609 5.67926 5.78153 5.78455 6.16947 6.40454 6.50860 6.81545 7.16518 7.17912 7.89039 8.39768 9.19692 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012452 B = 0.002461 C = 0.002181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2248.169617 B =11372.721562 C =12836.502853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.180 3.820 3 H 0.085 0.915 4 C -0.144 4.144 5 C 0.521 3.479 6 O -0.555 6.555 7 N -0.684 5.684 8 C 0.111 3.889 9 C -0.032 4.032 10 C -0.116 4.116 11 C 0.176 3.824 12 N -0.609 5.609 13 C -0.260 4.260 14 H 0.068 0.932 15 C -0.052 4.052 16 N -0.936 5.936 17 Si 0.963 3.037 18 H -0.279 1.279 19 H -0.297 1.297 20 H -0.275 1.275 21 C 0.139 3.861 22 C -0.112 4.112 23 C -0.164 4.164 24 C -0.182 4.182 25 N -0.375 5.375 26 C 0.055 3.945 27 C -0.285 4.285 28 C 0.035 3.965 29 N -0.347 5.347 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.063 0.937 33 H 0.097 0.903 34 H 0.125 0.875 35 H 0.413 0.587 36 H 0.077 0.923 37 H 0.048 0.952 38 H 0.060 0.940 39 H -0.005 1.005 40 H 0.050 0.950 41 H 0.249 0.751 42 H 0.013 0.987 43 H 0.056 0.944 44 H 0.083 0.917 45 H 0.062 0.938 46 H 0.103 0.897 47 H 0.101 0.899 48 H 0.094 0.906 49 H 0.094 0.906 50 H 0.203 0.797 51 H 0.168 0.832 52 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.510 -1.043 -22.503 25.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.078 3.922 3 H 0.104 0.896 4 C -0.185 4.185 5 C 0.309 3.691 6 O -0.435 6.435 7 N -0.334 5.334 8 C 0.023 3.977 9 C -0.052 4.052 10 C -0.156 4.156 11 C 0.051 3.949 12 N -0.333 5.333 13 C -0.390 4.390 14 H 0.086 0.914 15 C -0.248 4.248 16 N -0.582 5.582 17 Si 0.792 3.208 18 H -0.205 1.205 19 H -0.223 1.223 20 H -0.201 1.201 21 C 0.014 3.986 22 C -0.151 4.151 23 C -0.203 4.203 24 C -0.220 4.220 25 N -0.158 5.158 26 C -0.090 4.090 27 C -0.314 4.314 28 C -0.150 4.150 29 N -0.168 5.168 30 H 0.102 0.898 31 H 0.109 0.891 32 H 0.082 0.918 33 H 0.116 0.884 34 H 0.143 0.857 35 H 0.251 0.749 36 H 0.096 0.904 37 H 0.067 0.933 38 H 0.079 0.921 39 H 0.013 0.987 40 H 0.068 0.932 41 H 0.058 0.942 42 H 0.031 0.969 43 H 0.075 0.925 44 H 0.102 0.898 45 H 0.080 0.920 46 H 0.121 0.879 47 H 0.120 0.880 48 H 0.112 0.888 49 H 0.112 0.888 50 H 0.220 0.780 51 H 0.186 0.814 52 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -12.373 0.792 -21.759 25.044 hybrid contribution 1.219 -1.124 0.264 1.679 sum -11.154 -0.333 -21.495 24.219 Atomic orbital electron populations 1.22236 0.90813 1.04236 1.04327 1.20830 0.96100 0.95725 0.79583 0.89647 1.22006 1.04060 1.01475 0.90978 1.20499 0.78755 0.85361 0.84521 1.90649 1.40912 1.25114 1.86798 1.45386 1.56581 1.27421 1.04035 1.20680 1.00790 0.90413 0.85826 1.20612 0.96328 0.95762 0.92457 1.21997 0.96067 0.99332 0.98157 1.20579 0.99167 0.82943 0.92252 1.44314 1.08252 1.01776 1.78952 1.19487 1.01467 0.98433 1.19624 0.91401 1.25766 1.03173 0.99740 0.96074 1.70179 1.33771 1.29697 1.24549 0.85400 0.80134 0.78232 0.77056 1.20501 1.22343 1.20060 1.21075 0.86390 0.97029 0.94119 1.21871 1.01338 0.93987 0.97875 1.23416 0.90752 1.02482 1.03601 1.23297 1.02045 0.93644 1.03005 1.48994 1.19541 1.24684 1.22533 1.23103 1.00510 0.90472 0.94955 1.21885 0.98810 1.06948 1.03774 1.24410 1.00107 0.93484 0.97031 1.77363 1.04723 1.25569 1.09174 0.89820 0.89139 0.91823 0.88441 0.85704 0.74918 0.90431 0.93327 0.92096 0.98705 0.93158 0.94240 0.96890 0.92536 0.89829 0.91980 0.87912 0.88036 0.88802 0.88806 0.78048 0.81407 0.78163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.16 8.58 71.99 0.62 -1.55 16 2 C 0.18 3.14 3.05 44.99 0.14 3.28 16 3 H 0.09 1.91 7.96 -2.39 -0.02 1.89 16 4 C -0.14 -2.27 5.50 29.85 0.16 -2.11 16 5 C 0.52 10.69 7.25 87.66 0.64 11.32 16 6 O -0.56 -13.84 9.44 -3.04 -0.03 -13.87 16 7 N -0.68 -14.51 5.39 -422.90 -2.28 -16.78 16 8 C 0.11 2.72 2.48 3.61 0.01 2.73 16 9 C -0.03 -0.93 2.28 -10.77 -0.02 -0.96 16 10 C -0.12 -4.14 5.22 30.67 0.16 -3.98 16 11 C 0.18 8.27 5.31 86.36 0.46 8.72 16 12 N -0.61 -29.28 2.99 -699.09 -2.09 -31.37 16 13 C -0.26 -13.90 9.58 84.03 0.81 -13.09 16 14 H 0.07 3.50 7.89 -2.91 -0.02 3.48 16 15 C -0.05 -2.89 4.91 84.86 0.42 -2.47 16 16 N -0.94 -55.08 11.19 21.65 0.24 -54.84 16 17 Si 0.96 44.39 29.59 68.60 2.03 46.42 16 18 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 19 H -0.30 -13.89 7.11 99.48 0.71 -13.18 16 20 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 21 C 0.14 5.29 6.52 86.36 0.56 5.85 16 22 C -0.11 -3.15 4.83 30.67 0.15 -3.00 16 23 C -0.16 -3.87 9.36 30.60 0.29 -3.58 16 24 C -0.18 -4.72 8.91 30.60 0.27 -4.44 16 25 N -0.37 -7.06 3.53 -327.48 -1.15 -8.22 16 26 C 0.06 0.77 10.59 83.54 0.88 1.65 16 27 C -0.29 -4.06 10.80 21.99 0.24 -3.83 16 28 C 0.04 0.62 12.03 85.24 1.03 1.65 16 29 N -0.35 -8.14 12.58 -57.02 -0.72 -8.86 16 30 H 0.08 0.74 7.16 -2.39 -0.02 0.72 16 31 H 0.09 1.53 5.95 -2.39 -0.01 1.52 16 32 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 33 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.12 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.41 7.90 6.66 -92.71 -0.62 7.28 16 36 H 0.08 2.30 7.90 -2.39 -0.02 2.28 16 37 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 38 H 0.06 2.03 7.25 -2.39 -0.02 2.01 16 39 H -0.01 -0.26 8.14 -2.38 -0.02 -0.28 16 40 H 0.05 2.73 6.04 -2.38 -0.01 2.71 16 41 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 42 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 43 H 0.06 2.09 7.93 -2.39 -0.02 2.07 16 44 H 0.08 1.91 8.14 -2.39 -0.02 1.90 16 45 H 0.06 1.69 6.50 -2.39 -0.02 1.67 16 46 H 0.10 2.51 6.36 -2.39 -0.02 2.50 16 47 H 0.10 2.18 8.05 -2.39 -0.02 2.16 16 48 H 0.09 2.41 7.60 -2.39 -0.02 2.39 16 49 H 0.09 2.69 6.39 -2.39 -0.02 2.67 16 50 H 0.20 1.30 7.26 -2.91 -0.02 1.28 16 51 H 0.17 1.51 8.06 -2.91 -0.02 1.48 16 52 H 0.20 2.35 8.06 -2.91 -0.02 2.33 16 Total: -1.00 -69.16 401.53 3.10 -66.06 By element: Atomic # 1 Polarization: 24.94 SS G_CDS: 0.30 Total: 25.24 kcal Atomic # 6 Polarization: -10.58 SS G_CDS: 6.80 Total: -3.78 kcal Atomic # 7 Polarization: -114.07 SS G_CDS: -6.00 Total: -120.07 kcal Atomic # 8 Polarization: -13.84 SS G_CDS: -0.03 Total: -13.87 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Total: -69.16 3.10 -66.06 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279368204.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.769 kcal (2) G-P(sol) polarization free energy of solvation -69.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.056 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds