Wall clock time and date at job start Wed Apr 1 2020 03:58:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.47265 * 2 1 4 4 N 1.46505 * 109.46734 * 120.00056 * 2 1 3 5 5 C 1.36932 * 120.00148 * 274.99684 * 4 2 1 6 6 H 1.07998 * 120.00014 * 0.02562 * 5 4 2 7 7 C 1.38812 * 120.00355 * 180.02562 * 5 4 2 8 8 N 1.31622 * 119.99768 * 359.97438 * 7 5 4 9 9 Si 1.86792 * 120.00361 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47478 * 89.99736 * 9 7 5 11 11 H 1.48501 * 109.47370 * 210.00005 * 9 7 5 12 12 H 1.48504 * 109.47238 * 329.99663 * 9 7 5 13 13 C 1.53002 * 109.47234 * 239.99730 * 2 1 3 14 14 C 1.53032 * 109.45874 * 180.02562 * 13 2 1 15 15 C 1.53204 * 109.30994 * 178.60469 * 14 13 2 16 16 N 1.46928 * 108.76246 * 54.65418 * 15 14 13 17 17 C 1.34773 * 120.62636 * 126.41176 * 16 15 14 18 18 O 1.21637 * 119.99873 * 174.68214 * 17 16 15 19 19 C 1.47161 * 120.00227 * 354.67386 * 17 16 15 20 20 C 1.38401 * 126.88906 * 268.89256 * 19 17 16 21 21 C 1.50709 * 127.31718 * 0.03506 * 20 19 17 22 22 C 1.53002 * 117.49427 * 188.74618 * 21 20 19 23 23 C 1.52999 * 117.49633 * 120.08955 * 21 20 19 24 24 C 1.39669 * 105.36284 * 179.97438 * 20 19 17 25 25 N 1.30862 * 107.86184 * 0.35264 * 24 20 19 26 26 N 1.28449 * 110.92635 * 359.77725 * 25 24 20 27 27 C 1.46491 * 125.19063 * 180.02562 * 26 25 24 28 28 C 1.46925 * 118.73872 * 306.38077 * 16 15 14 29 29 C 1.53039 * 109.45384 * 59.97547 * 13 2 1 30 30 H 1.09001 * 109.47192 * 60.00126 * 1 2 3 31 31 H 1.09001 * 109.47167 * 299.99739 * 1 2 3 32 32 H 1.09002 * 109.47571 * 180.02562 * 1 2 3 33 33 H 0.97000 * 119.99544 * 95.00509 * 4 2 1 34 34 H 0.96997 * 120.00323 * 179.97438 * 8 7 5 35 35 H 1.08995 * 109.45940 * 300.00467 * 13 2 1 36 36 H 1.08998 * 109.49806 * 298.56173 * 14 13 2 37 37 H 1.08996 * 109.50225 * 58.66447 * 14 13 2 38 38 H 1.08999 * 109.59777 * 294.86855 * 15 14 13 39 39 H 1.09000 * 109.69950 * 174.50057 * 15 14 13 40 40 H 1.08995 * 115.55248 * 334.41941 * 21 20 19 41 41 H 1.08997 * 117.50492 * 359.97438 * 22 21 20 42 42 H 1.09004 * 117.49302 * 145.02721 * 22 21 20 43 43 H 1.09003 * 117.50143 * 214.98195 * 23 21 20 44 44 H 1.09002 * 117.49861 * 359.97438 * 23 21 20 45 45 H 1.07999 * 126.07264 * 180.16909 * 24 20 19 46 46 H 1.09002 * 109.47332 * 274.90576 * 27 26 25 47 47 H 1.09003 * 109.47730 * 34.91185 * 27 26 25 48 48 H 1.08999 * 109.47409 * 154.91228 * 27 26 25 49 49 H 1.08995 * 109.58750 * 293.82227 * 28 16 15 50 50 H 1.08999 * 109.69821 * 173.46792 * 28 16 15 51 51 H 1.08997 * 109.50046 * 301.33146 * 29 13 2 52 52 H 1.08998 * 109.50327 * 61.40280 * 29 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0182 -0.6907 1.1962 5 6 2.1490 -0.0076 2.3758 6 1 1.8919 1.0402 2.4244 7 6 2.6122 -0.6618 3.5091 8 7 2.9251 -1.9389 3.4500 9 14 2.7899 0.2698 5.1183 10 1 1.5223 0.1777 5.8863 11 1 3.8949 -0.3228 5.9140 12 1 3.0940 1.6953 4.8341 13 6 2.0400 -0.7213 -1.2492 14 6 3.5703 -0.7217 -1.2486 15 6 4.0773 -1.4749 -2.4826 16 7 3.4746 -0.8770 -3.6818 17 6 4.2482 -0.4583 -4.7030 18 8 3.7347 -0.0547 -5.7291 19 6 5.7140 -0.4893 -4.5765 20 6 6.5297 0.5286 -4.1140 21 6 6.1055 1.8936 -3.6362 22 6 7.2067 2.9207 -3.3650 23 6 6.4544 2.2781 -2.1970 24 6 7.8293 0.0216 -4.1829 25 7 7.7606 -1.1956 -4.6584 26 7 6.5429 -1.5261 -4.8990 27 6 6.1092 -2.8180 -5.4366 28 6 2.0128 -0.7448 -3.7469 29 6 1.5292 0.0000 -2.4985 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 2.2490 -1.6318 1.1526 34 1 3.2491 -2.3961 4.2418 35 1 1.6765 -1.7489 -1.2490 36 1 3.9344 0.3054 -1.2741 37 1 3.9337 -1.2147 -0.3470 38 1 3.7903 -2.5242 -2.4139 39 1 5.1628 -1.3959 -2.5410 40 1 5.1627 2.2614 -4.0409 41 1 8.2378 2.6092 -3.5318 42 1 6.9880 3.9644 -3.5910 43 1 5.7412 2.8992 -1.6550 44 1 6.9903 1.5437 -1.5956 45 1 8.7311 0.5428 -3.8975 46 1 6.1740 -2.7990 -6.5246 47 1 6.7523 -3.6077 -5.0481 48 1 5.0786 -3.0086 -5.1374 49 1 1.5576 -1.7346 -3.7813 50 1 1.7340 -0.1832 -4.6384 51 1 0.4395 0.0206 -2.4868 52 1 1.9122 1.0204 -2.5118 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317688838.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:58:16 Heat of formation + Delta-G solvation = 78.426592 kcal Electronic energy + Delta-G solvation = -31995.488407 eV Core-core repulsion = 27997.761121 eV Total energy + Delta-G solvation = -3997.727286 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.73876 -40.04529 -37.93477 -37.32590 -35.47340 -33.36651 -32.98517 -31.59834 -30.86109 -30.38770 -28.29604 -27.32386 -25.59311 -24.31955 -23.62553 -22.95323 -22.54158 -22.23284 -20.73036 -20.16844 -19.69965 -19.05123 -17.90376 -17.11077 -16.73803 -15.96788 -15.85962 -15.60173 -15.14574 -14.83953 -14.43712 -14.28771 -14.02640 -13.89161 -13.78819 -13.48662 -13.37079 -13.12972 -13.00346 -12.73437 -12.59474 -12.34220 -12.13172 -12.06334 -11.66356 -11.57386 -11.20339 -11.10492 -11.02540 -10.88808 -10.81823 -10.73596 -10.41368 -10.35743 -10.30072 -10.20266 -10.10816 -9.82193 -9.60365 -9.27529 -8.92552 -8.72805 -8.62333 -6.96209 -5.78271 -3.06006 1.50351 1.93204 2.46232 2.52820 2.94433 3.41884 3.47786 3.48771 3.89672 4.13812 4.25054 4.56928 4.64990 4.79213 4.79376 4.86581 4.94586 4.99303 5.02860 5.05793 5.06720 5.12676 5.17532 5.31855 5.35077 5.48004 5.51858 5.57945 5.61568 5.71031 5.77602 5.87613 5.88741 5.89137 5.97289 6.06441 6.07702 6.14354 6.16933 6.29893 6.31455 6.37315 6.45739 6.50752 6.56695 6.64105 6.75675 6.92011 7.10666 7.18489 7.69428 7.87633 7.90204 8.40724 9.52121 10.10025 10.44748 11.44460 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011000 B = 0.003266 C = 0.002959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2544.799715 B = 8571.732268 C = 9460.024469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.179 3.821 3 H 0.045 0.955 4 N -0.722 5.722 5 C -0.234 4.234 6 H 0.069 0.931 7 C -0.013 4.013 8 N -0.934 5.934 9 Si 0.903 3.097 10 H -0.291 1.291 11 H -0.292 1.292 12 H -0.282 1.282 13 C -0.090 4.090 14 C -0.119 4.119 15 C 0.106 3.894 16 N -0.591 5.591 17 C 0.593 3.407 18 O -0.531 6.531 19 C -0.018 4.018 20 C -0.121 4.121 21 C -0.085 4.085 22 C -0.171 4.171 23 C -0.164 4.164 24 C 0.009 3.991 25 N -0.283 5.283 26 N -0.276 5.276 27 C 0.089 3.911 28 C 0.112 3.888 29 C -0.128 4.128 30 H 0.038 0.962 31 H 0.051 0.949 32 H 0.045 0.955 33 H 0.382 0.618 34 H 0.254 0.746 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.092 0.908 38 H 0.070 0.930 39 H 0.078 0.922 40 H 0.108 0.892 41 H 0.096 0.904 42 H 0.096 0.904 43 H 0.099 0.901 44 H 0.098 0.902 45 H 0.184 0.816 46 H 0.085 0.915 47 H 0.100 0.900 48 H 0.090 0.910 49 H 0.070 0.930 50 H 0.090 0.910 51 H 0.080 0.920 52 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.352 1.654 -18.097 18.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.069 3.931 3 H 0.063 0.937 4 N -0.364 5.364 5 C -0.366 4.366 6 H 0.087 0.913 7 C -0.209 4.209 8 N -0.583 5.583 9 Si 0.734 3.266 10 H -0.219 1.219 11 H -0.218 1.218 12 H -0.208 1.208 13 C -0.109 4.109 14 C -0.157 4.157 15 C -0.016 4.016 16 N -0.324 5.324 17 C 0.377 3.623 18 O -0.407 6.407 19 C -0.146 4.146 20 C -0.131 4.131 21 C -0.104 4.104 22 C -0.208 4.208 23 C -0.201 4.201 24 C -0.169 4.169 25 N -0.113 5.113 26 N -0.064 5.064 27 C -0.051 4.051 28 C -0.009 4.009 29 C -0.167 4.167 30 H 0.057 0.943 31 H 0.070 0.930 32 H 0.064 0.936 33 H 0.216 0.784 34 H 0.064 0.936 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.111 0.889 38 H 0.088 0.912 39 H 0.097 0.903 40 H 0.126 0.874 41 H 0.114 0.886 42 H 0.115 0.885 43 H 0.118 0.882 44 H 0.117 0.883 45 H 0.201 0.799 46 H 0.104 0.896 47 H 0.118 0.882 48 H 0.109 0.891 49 H 0.088 0.912 50 H 0.108 0.892 51 H 0.098 0.902 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 5.691 0.886 -18.863 19.723 hybrid contribution -0.322 0.710 1.283 1.501 sum 5.369 1.596 -17.580 18.451 Atomic orbital electron populations 1.22499 0.99553 1.00731 0.99859 1.20201 0.91555 0.95333 0.86024 0.93691 1.42403 1.78093 1.10587 1.05271 1.19217 1.36156 0.93811 0.87384 0.91349 1.24687 1.02333 0.95932 0.97905 1.69647 1.51163 1.08646 1.28810 0.86250 0.77267 0.78864 0.84191 1.21852 1.21847 1.20805 1.21385 0.94934 0.99894 0.94684 1.21856 0.95893 1.01206 0.96791 1.21917 0.98114 0.97128 0.84435 1.48156 1.07297 1.59390 1.17527 1.17073 0.84073 0.77838 0.83276 1.90821 1.74165 1.47045 1.28686 1.21124 0.92273 0.91252 1.09983 1.19759 0.92120 0.95111 1.06120 1.20164 0.99861 0.90774 0.99591 1.22974 0.96891 0.97689 1.03204 1.23056 1.03361 1.03301 0.90368 1.23339 0.97750 0.91567 1.04225 1.73145 1.02068 1.17256 1.18842 1.45484 1.02828 1.12285 1.45764 1.22151 1.01767 0.80798 1.00429 1.21729 0.78145 1.01176 0.99883 1.22027 1.01284 0.99704 0.93639 0.94305 0.93027 0.93624 0.78386 0.93605 0.91422 0.91549 0.88936 0.91182 0.90316 0.87358 0.88599 0.88516 0.88219 0.88324 0.79946 0.89600 0.88188 0.89129 0.91191 0.89158 0.90156 0.91504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.82 9.14 37.16 0.34 -2.48 16 2 C 0.18 3.25 2.47 -67.93 -0.17 3.08 16 3 H 0.05 0.87 8.08 -51.93 -0.42 0.45 16 4 N -0.72 -16.78 4.41 -53.43 -0.24 -17.02 16 5 C -0.23 -6.21 9.93 -15.06 -0.15 -6.36 16 6 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 7 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 8 N -0.93 -27.21 13.06 55.49 0.72 -26.48 16 9 Si 0.90 21.91 29.55 -169.99 -5.02 16.88 16 10 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 11 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 C -0.09 -1.30 1.79 -90.58 -0.16 -1.46 16 14 C -0.12 -1.74 5.22 -26.61 -0.14 -1.88 16 15 C 0.11 1.31 6.35 -3.70 -0.02 1.28 16 16 N -0.59 -7.30 2.97 -174.13 -0.52 -7.81 16 17 C 0.59 8.23 6.71 -12.64 -0.08 8.14 16 18 O -0.53 -8.82 16.55 5.24 0.09 -8.74 16 19 C -0.02 -0.24 4.64 -82.06 -0.38 -0.62 16 20 C -0.12 -1.53 5.94 -104.02 -0.62 -2.14 16 21 C -0.08 -0.98 6.12 -91.77 -0.56 -1.54 16 22 C -0.17 -1.59 10.06 -26.69 -0.27 -1.86 16 23 C -0.16 -1.75 10.24 -26.69 -0.27 -2.03 16 24 C 0.01 0.10 11.41 -17.43 -0.20 -0.10 16 25 N -0.28 -3.59 11.90 30.59 0.36 -3.23 16 26 N -0.28 -3.30 3.75 -63.89 -0.24 -3.54 16 27 C 0.09 0.72 11.21 59.84 0.67 1.40 16 28 C 0.11 1.29 6.41 -3.71 -0.02 1.26 16 29 C -0.13 -1.55 5.04 -26.61 -0.13 -1.68 16 30 H 0.04 0.54 6.40 -51.93 -0.33 0.21 16 31 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.38 9.47 7.58 -40.82 -0.31 9.16 16 34 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 35 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.09 1.61 7.41 -51.93 -0.38 1.23 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.08 1.00 6.32 -51.93 -0.33 0.67 16 40 H 0.11 1.35 8.14 -51.93 -0.42 0.93 16 41 H 0.10 0.79 7.12 -51.93 -0.37 0.42 16 42 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.10 1.10 8.14 -51.93 -0.42 0.67 16 45 H 0.18 1.65 7.34 -52.49 -0.39 1.26 16 46 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 48 H 0.09 0.68 7.65 -51.93 -0.40 0.28 16 49 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 50 H 0.09 1.08 7.04 -51.93 -0.37 0.71 16 51 H 0.08 0.89 6.36 -51.93 -0.33 0.56 16 52 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 414.99 15.07 6.25 6.25 Total: -1.00 -31.94 414.99 -9.52 -41.46 By element: Atomic # 1 Polarization: 18.32 SS G_CDS: -8.66 Total: 9.66 kcal Atomic # 6 Polarization: -5.16 SS G_CDS: -2.27 Total: -7.43 kcal Atomic # 7 Polarization: -58.18 SS G_CDS: 0.10 Total: -58.09 kcal Atomic # 8 Polarization: -8.82 SS G_CDS: 0.09 Total: -8.74 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -31.94 -9.52 -41.46 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317688838.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.885 kcal (2) G-P(sol) polarization free energy of solvation -31.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds