Wall clock time and date at job start Wed Apr 1 2020 03:58:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.47265 * 2 1 4 4 N 1.46505 * 109.46734 * 120.00056 * 2 1 3 5 5 C 1.36932 * 120.00148 * 274.99684 * 4 2 1 6 6 H 1.07998 * 120.00014 * 0.02562 * 5 4 2 7 7 C 1.38812 * 120.00355 * 180.02562 * 5 4 2 8 8 N 1.31622 * 119.99768 * 359.97438 * 7 5 4 9 9 Si 1.86792 * 120.00361 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47478 * 89.99736 * 9 7 5 11 11 H 1.48501 * 109.47370 * 210.00005 * 9 7 5 12 12 H 1.48504 * 109.47238 * 329.99663 * 9 7 5 13 13 C 1.53002 * 109.47234 * 239.99730 * 2 1 3 14 14 C 1.53032 * 109.45874 * 180.02562 * 13 2 1 15 15 C 1.53204 * 109.30994 * 178.60469 * 14 13 2 16 16 N 1.46928 * 108.76246 * 54.65418 * 15 14 13 17 17 C 1.34773 * 120.62636 * 126.41176 * 16 15 14 18 18 O 1.21637 * 119.99873 * 174.68214 * 17 16 15 19 19 C 1.47161 * 120.00227 * 354.67386 * 17 16 15 20 20 C 1.38401 * 126.88906 * 268.89256 * 19 17 16 21 21 C 1.50709 * 127.31718 * 0.03506 * 20 19 17 22 22 C 1.53002 * 117.49427 * 188.74618 * 21 20 19 23 23 C 1.52999 * 117.49633 * 120.08955 * 21 20 19 24 24 C 1.39669 * 105.36284 * 179.97438 * 20 19 17 25 25 N 1.30862 * 107.86184 * 0.35264 * 24 20 19 26 26 N 1.28449 * 110.92635 * 359.77725 * 25 24 20 27 27 C 1.46491 * 125.19063 * 180.02562 * 26 25 24 28 28 C 1.46925 * 118.73872 * 306.38077 * 16 15 14 29 29 C 1.53039 * 109.45384 * 59.97547 * 13 2 1 30 30 H 1.09001 * 109.47192 * 60.00126 * 1 2 3 31 31 H 1.09001 * 109.47167 * 299.99739 * 1 2 3 32 32 H 1.09002 * 109.47571 * 180.02562 * 1 2 3 33 33 H 0.97000 * 119.99544 * 95.00509 * 4 2 1 34 34 H 0.96997 * 120.00323 * 179.97438 * 8 7 5 35 35 H 1.08995 * 109.45940 * 300.00467 * 13 2 1 36 36 H 1.08998 * 109.49806 * 298.56173 * 14 13 2 37 37 H 1.08996 * 109.50225 * 58.66447 * 14 13 2 38 38 H 1.08999 * 109.59777 * 294.86855 * 15 14 13 39 39 H 1.09000 * 109.69950 * 174.50057 * 15 14 13 40 40 H 1.08995 * 115.55248 * 334.41941 * 21 20 19 41 41 H 1.08997 * 117.50492 * 359.97438 * 22 21 20 42 42 H 1.09004 * 117.49302 * 145.02721 * 22 21 20 43 43 H 1.09003 * 117.50143 * 214.98195 * 23 21 20 44 44 H 1.09002 * 117.49861 * 359.97438 * 23 21 20 45 45 H 1.07999 * 126.07264 * 180.16909 * 24 20 19 46 46 H 1.09002 * 109.47332 * 274.90576 * 27 26 25 47 47 H 1.09003 * 109.47730 * 34.91185 * 27 26 25 48 48 H 1.08999 * 109.47409 * 154.91228 * 27 26 25 49 49 H 1.08995 * 109.58750 * 293.82227 * 28 16 15 50 50 H 1.08999 * 109.69821 * 173.46792 * 28 16 15 51 51 H 1.08997 * 109.50046 * 301.33146 * 29 13 2 52 52 H 1.08998 * 109.50327 * 61.40280 * 29 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0182 -0.6907 1.1962 5 6 2.1490 -0.0076 2.3758 6 1 1.8919 1.0402 2.4244 7 6 2.6122 -0.6618 3.5091 8 7 2.9251 -1.9389 3.4500 9 14 2.7899 0.2698 5.1183 10 1 1.5223 0.1777 5.8863 11 1 3.8949 -0.3228 5.9140 12 1 3.0940 1.6953 4.8341 13 6 2.0400 -0.7213 -1.2492 14 6 3.5703 -0.7217 -1.2486 15 6 4.0773 -1.4749 -2.4826 16 7 3.4746 -0.8770 -3.6818 17 6 4.2482 -0.4583 -4.7030 18 8 3.7347 -0.0547 -5.7291 19 6 5.7140 -0.4893 -4.5765 20 6 6.5297 0.5286 -4.1140 21 6 6.1055 1.8936 -3.6362 22 6 7.2067 2.9207 -3.3650 23 6 6.4544 2.2781 -2.1970 24 6 7.8293 0.0216 -4.1829 25 7 7.7606 -1.1956 -4.6584 26 7 6.5429 -1.5261 -4.8990 27 6 6.1092 -2.8180 -5.4366 28 6 2.0128 -0.7448 -3.7469 29 6 1.5292 0.0000 -2.4985 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 2.2490 -1.6318 1.1526 34 1 3.2491 -2.3961 4.2418 35 1 1.6765 -1.7489 -1.2490 36 1 3.9344 0.3054 -1.2741 37 1 3.9337 -1.2147 -0.3470 38 1 3.7903 -2.5242 -2.4139 39 1 5.1628 -1.3959 -2.5410 40 1 5.1627 2.2614 -4.0409 41 1 8.2378 2.6092 -3.5318 42 1 6.9880 3.9644 -3.5910 43 1 5.7412 2.8992 -1.6550 44 1 6.9903 1.5437 -1.5956 45 1 8.7311 0.5428 -3.8975 46 1 6.1740 -2.7990 -6.5246 47 1 6.7523 -3.6077 -5.0481 48 1 5.0786 -3.0086 -5.1374 49 1 1.5576 -1.7346 -3.7813 50 1 1.7340 -0.1832 -4.6384 51 1 0.4395 0.0206 -2.4868 52 1 1.9122 1.0204 -2.5118 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317688838.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:58:14 Heat of formation + Delta-G solvation = 60.550403 kcal Electronic energy + Delta-G solvation = -31996.263576 eV Core-core repulsion = 27997.761121 eV Total energy + Delta-G solvation = -3998.502455 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -43.64490 -41.13558 -39.19172 -38.16938 -36.92157 -34.68584 -34.13039 -32.85005 -32.15754 -31.55478 -29.89681 -28.09095 -26.81277 -25.84890 -24.75972 -24.13388 -23.55558 -23.14255 -21.91412 -21.10896 -20.99277 -20.09494 -19.18620 -18.71195 -17.78497 -16.88831 -16.80565 -16.77379 -16.47746 -16.02420 -15.65757 -15.47093 -15.35975 -15.17129 -14.99515 -14.64631 -14.40709 -14.22138 -13.95885 -13.83087 -13.70761 -13.59257 -13.45629 -13.01257 -12.96338 -12.85689 -12.76252 -12.35393 -12.30584 -12.18513 -12.12306 -11.98856 -11.82999 -11.71576 -11.52998 -11.39955 -11.26108 -11.21468 -11.17583 -10.86074 -10.18257 -9.81513 -9.52893 -8.92218 -7.89246 -5.14768 0.56120 0.96988 1.48830 1.49292 1.54221 1.57100 1.58663 1.99491 2.59502 3.05467 3.19776 3.40265 3.45038 3.76342 3.77752 3.84393 3.90688 3.96526 4.07353 4.11839 4.21099 4.23698 4.25323 4.27402 4.33850 4.39674 4.46691 4.51335 4.56772 4.58273 4.74887 4.79778 4.81898 4.86224 4.88997 4.92853 5.04660 5.05385 5.07417 5.15557 5.23598 5.26173 5.29153 5.31853 5.45220 5.48148 5.53019 5.61164 5.70194 5.71658 6.12097 6.33951 6.81696 6.99326 7.40774 8.19010 8.41784 9.34061 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011000 B = 0.003266 C = 0.002959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2544.799715 B = 8571.732268 C = 9460.024469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.174 3.826 3 H 0.034 0.966 4 N -0.730 5.730 5 C -0.229 4.229 6 H 0.069 0.931 7 C -0.071 4.071 8 N -0.967 5.967 9 Si 0.960 3.040 10 H -0.291 1.291 11 H -0.298 1.298 12 H -0.272 1.272 13 C -0.079 4.079 14 C -0.111 4.111 15 C 0.119 3.881 16 N -0.585 5.585 17 C 0.598 3.402 18 O -0.562 6.562 19 C -0.038 4.038 20 C -0.129 4.129 21 C -0.099 4.099 22 C -0.150 4.150 23 C -0.168 4.168 24 C 0.004 3.996 25 N -0.295 5.295 26 N -0.276 5.276 27 C 0.079 3.921 28 C 0.113 3.887 29 C -0.118 4.118 30 H 0.074 0.926 31 H 0.028 0.972 32 H 0.044 0.956 33 H 0.373 0.627 34 H 0.248 0.752 35 H 0.071 0.929 36 H 0.054 0.946 37 H 0.062 0.938 38 H 0.087 0.913 39 H 0.075 0.925 40 H 0.094 0.906 41 H 0.111 0.889 42 H 0.110 0.890 43 H 0.096 0.904 44 H 0.092 0.908 45 H 0.207 0.793 46 H 0.097 0.903 47 H 0.117 0.883 48 H 0.096 0.904 49 H 0.091 0.909 50 H 0.090 0.910 51 H 0.099 0.901 52 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.280 2.062 -19.249 20.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.066 3.934 3 H 0.052 0.948 4 N -0.371 5.371 5 C -0.362 4.362 6 H 0.087 0.913 7 C -0.264 4.264 8 N -0.618 5.618 9 Si 0.791 3.209 10 H -0.219 1.219 11 H -0.225 1.225 12 H -0.197 1.197 13 C -0.098 4.098 14 C -0.149 4.149 15 C -0.004 4.004 16 N -0.316 5.316 17 C 0.384 3.616 18 O -0.440 6.440 19 C -0.167 4.167 20 C -0.140 4.140 21 C -0.119 4.119 22 C -0.186 4.186 23 C -0.205 4.205 24 C -0.173 4.173 25 N -0.126 5.126 26 N -0.064 5.064 27 C -0.060 4.060 28 C -0.008 4.008 29 C -0.156 4.156 30 H 0.093 0.907 31 H 0.048 0.952 32 H 0.063 0.937 33 H 0.205 0.795 34 H 0.057 0.943 35 H 0.090 0.910 36 H 0.072 0.928 37 H 0.080 0.920 38 H 0.105 0.895 39 H 0.094 0.906 40 H 0.112 0.888 41 H 0.129 0.871 42 H 0.128 0.872 43 H 0.114 0.886 44 H 0.111 0.889 45 H 0.224 0.776 46 H 0.115 0.885 47 H 0.136 0.864 48 H 0.115 0.885 49 H 0.109 0.891 50 H 0.108 0.892 51 H 0.117 0.883 52 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 5.594 1.318 -20.037 20.845 hybrid contribution -0.324 0.621 1.588 1.735 sum 5.270 1.939 -18.450 19.285 Atomic orbital electron populations 1.22362 0.97947 1.00871 1.00548 1.20421 0.92524 0.94692 0.85801 0.94803 1.42552 1.78291 1.10217 1.06000 1.19533 1.34205 0.93922 0.88511 0.91289 1.25354 1.03420 0.96756 1.00827 1.69784 1.52987 1.09970 1.29106 0.85326 0.76709 0.78181 0.80718 1.21889 1.22465 1.19725 1.21252 0.94596 0.99897 0.94039 1.21686 0.96121 1.00421 0.96663 1.21772 0.97888 0.97492 0.83201 1.48158 1.07744 1.58721 1.16994 1.17122 0.84376 0.77150 0.82977 1.90800 1.74782 1.48566 1.29872 1.21166 0.92133 0.92188 1.11174 1.19992 0.92545 0.95394 1.06085 1.20127 1.00385 0.91259 1.00102 1.23102 0.96967 0.97780 1.00788 1.23012 1.03810 1.03517 0.90206 1.23744 0.98300 0.91434 1.03809 1.73127 1.02465 1.17746 1.19257 1.45806 1.02404 1.12931 1.45248 1.22459 1.02513 0.79834 1.01204 1.21828 0.77458 1.02283 0.99280 1.21944 1.02284 0.98968 0.92410 0.90709 0.95237 0.93712 0.79478 0.94288 0.91012 0.92753 0.91957 0.89479 0.90631 0.88754 0.87055 0.87213 0.88562 0.88917 0.77649 0.88481 0.86429 0.88524 0.89050 0.89179 0.88293 0.92173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.08 9.14 71.98 0.66 -4.42 16 2 C 0.17 6.22 2.47 44.99 0.11 6.33 16 3 H 0.03 1.29 8.08 -2.39 -0.02 1.27 16 4 N -0.73 -34.23 4.41 -322.94 -1.42 -35.65 16 5 C -0.23 -12.25 9.93 84.03 0.83 -11.41 16 6 H 0.07 3.61 7.83 -2.91 -0.02 3.58 16 7 C -0.07 -3.97 5.50 84.86 0.47 -3.51 16 8 N -0.97 -57.33 13.06 21.65 0.28 -57.05 16 9 Si 0.96 45.41 29.55 68.60 2.03 47.43 16 10 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 11 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 12 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 13 C -0.08 -2.18 1.79 -10.77 -0.02 -2.20 16 14 C -0.11 -3.22 5.22 30.67 0.16 -3.06 16 15 C 0.12 2.81 6.35 86.37 0.55 3.35 16 16 N -0.58 -13.66 2.97 -823.06 -2.45 -16.11 16 17 C 0.60 16.15 6.71 86.59 0.58 16.73 16 18 O -0.56 -18.34 16.55 -4.15 -0.07 -18.41 16 19 C -0.04 -0.98 4.64 40.78 0.19 -0.79 16 20 C -0.13 -3.20 5.94 -19.48 -0.12 -3.32 16 21 C -0.10 -2.26 6.12 -11.54 -0.07 -2.33 16 22 C -0.15 -2.56 10.06 30.62 0.31 -2.25 16 23 C -0.17 -3.54 10.24 30.62 0.31 -3.23 16 24 C 0.00 0.09 11.41 85.18 0.97 1.06 16 25 N -0.30 -7.17 11.90 -57.14 -0.68 -7.85 16 26 N -0.28 -6.32 3.75 -356.04 -1.33 -7.65 16 27 C 0.08 1.17 11.21 127.77 1.43 2.60 16 28 C 0.11 2.33 6.41 86.36 0.55 2.88 16 29 C -0.12 -2.58 5.04 30.67 0.15 -2.43 16 30 H 0.07 1.86 6.40 -2.39 -0.02 1.85 16 31 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.37 18.78 7.58 -92.71 -0.70 18.08 16 34 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 35 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.06 2.22 7.41 -2.39 -0.02 2.20 16 38 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 39 H 0.08 1.88 6.32 -2.39 -0.02 1.87 16 40 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 41 H 0.11 1.56 7.12 -2.39 -0.02 1.55 16 42 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 43 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 44 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 45 H 0.21 3.34 7.34 -2.91 -0.02 3.31 16 46 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 47 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 48 H 0.10 1.29 7.65 -2.39 -0.02 1.28 16 49 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 50 H 0.09 1.96 7.04 -2.39 -0.02 1.94 16 51 H 0.10 1.85 6.36 -2.39 -0.02 1.83 16 52 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -69.23 414.99 3.65 -65.58 By element: Atomic # 1 Polarization: 35.48 SS G_CDS: 0.22 Total: 35.70 kcal Atomic # 6 Polarization: -13.07 SS G_CDS: 7.08 Total: -6.00 kcal Atomic # 7 Polarization: -118.71 SS G_CDS: -5.60 Total: -124.31 kcal Atomic # 8 Polarization: -18.34 SS G_CDS: -0.07 Total: -18.41 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.43 kcal Total: -69.23 3.65 -65.58 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317688838.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.133 kcal (2) G-P(sol) polarization free energy of solvation -69.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.582 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds