Wall clock time and date at job start Wed Apr 1 2020 05:28:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09009 * 109.47004 * 2 1 4 4 N 1.46494 * 109.47490 * 239.99637 * 2 1 3 5 5 C 1.36945 * 119.99825 * 84.99766 * 4 2 1 6 6 H 1.07993 * 120.00159 * 0.02562 * 5 4 2 7 7 C 1.38814 * 119.99611 * 180.02562 * 5 4 2 8 8 N 1.31618 * 120.00554 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 119.99515 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47348 * 89.99935 * 9 7 5 11 11 H 1.48505 * 109.46872 * 209.99871 * 9 7 5 12 12 H 1.48502 * 109.47028 * 329.99502 * 9 7 5 13 13 C 1.52998 * 109.47192 * 119.99636 * 2 1 3 14 14 H 1.09000 * 109.50265 * 180.02562 * 13 2 1 15 15 C 1.53048 * 109.49824 * 300.16663 * 13 2 1 16 16 C 1.53032 * 109.53864 * 181.31649 * 15 13 2 17 17 C 1.53627 * 109.24401 * 298.50898 * 16 15 13 18 18 N 1.46924 * 108.54154 * 54.85414 * 17 16 15 19 19 C 1.34776 * 120.62761 * 126.37146 * 18 17 16 20 20 O 1.21633 * 119.99735 * 188.68798 * 19 18 17 21 21 C 1.47160 * 120.00145 * 8.68156 * 19 18 17 22 22 C 1.38404 * 126.88411 * 27.75367 * 21 19 18 23 23 C 1.39670 * 105.36295 * 180.02562 * 22 21 19 24 24 C 1.50697 * 126.07165 * 179.97438 * 23 22 21 25 25 C 1.52999 * 117.51512 * 16.28920 * 24 23 22 26 26 C 1.53002 * 117.49926 * 84.91823 * 24 23 22 27 27 N 1.30868 * 107.86055 * 0.23301 * 23 22 21 28 28 N 1.28446 * 110.92471 * 359.60461 * 27 23 22 29 29 C 1.46506 * 125.19045 * 180.16576 * 28 27 23 30 30 C 1.46927 * 118.74007 * 306.09839 * 18 17 16 31 31 H 1.09002 * 109.46383 * 179.97438 * 1 2 3 32 32 H 1.08992 * 109.47396 * 300.00217 * 1 2 3 33 33 H 1.08998 * 109.46835 * 60.00856 * 1 2 3 34 34 H 0.96999 * 120.00328 * 265.00323 * 4 2 1 35 35 H 0.96995 * 120.00152 * 179.97438 * 8 7 5 36 36 H 1.08997 * 109.45631 * 301.33746 * 15 13 2 37 37 H 1.08997 * 109.46147 * 61.29484 * 15 13 2 38 38 H 1.09001 * 109.49996 * 58.58580 * 16 15 13 39 39 H 1.09007 * 109.49738 * 178.68341 * 16 15 13 40 40 H 1.08994 * 109.73884 * 295.12241 * 17 16 15 41 41 H 1.08998 * 109.66542 * 174.55303 * 17 16 15 42 42 H 1.08004 * 127.31881 * 0.04373 * 22 21 19 43 43 H 1.09001 * 115.55148 * 230.58546 * 24 23 22 44 44 H 1.09005 * 117.49473 * 214.96492 * 25 24 23 45 45 H 1.08991 * 117.50194 * 359.97438 * 25 24 23 46 46 H 1.09011 * 117.49472 * 359.97438 * 26 24 23 47 47 H 1.08991 * 117.50448 * 144.99452 * 26 24 23 48 48 H 1.08998 * 109.46711 * 264.63564 * 29 28 27 49 49 H 1.09007 * 109.46749 * 24.62926 * 29 28 27 50 50 H 1.08993 * 109.47401 * 144.63053 * 29 28 27 51 51 H 1.09003 * 109.58531 * 173.64854 * 30 18 17 52 52 H 1.08994 * 109.58669 * 293.92559 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0278 0.0000 4 7 2.0185 -0.6906 -1.1960 5 6 2.1492 -0.0075 -2.3757 6 1 1.8927 1.0404 -2.4242 7 6 2.6115 -0.6621 -3.5092 8 7 2.9247 -1.9391 -3.4500 9 14 2.7906 0.2699 -5.1182 10 1 4.1532 0.8541 -5.2029 11 1 2.5796 -0.6612 -6.2557 12 1 1.7812 1.3576 -5.1751 13 6 2.0401 -0.7212 1.2493 14 1 3.1301 -0.7210 1.2500 15 6 1.5268 -0.0025 2.4993 16 6 2.0633 -0.7037 3.7493 17 6 1.5484 -2.1508 3.7784 18 7 1.9181 -2.8037 2.5152 19 6 2.5957 -3.9688 2.5170 20 8 3.0335 -4.4193 1.4755 21 6 2.8060 -4.6957 3.7792 22 6 1.9959 -4.6641 4.9009 23 6 2.6118 -5.5100 5.8261 24 6 2.1164 -5.8155 7.2161 25 6 0.6617 -5.4692 7.5400 26 6 1.0800 -6.9308 7.3675 27 7 3.6984 -5.9859 5.2735 28 7 3.8402 -5.5363 4.0787 29 6 4.9454 -5.8699 3.1767 30 6 1.5298 -2.1656 1.2500 31 1 -0.3632 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 -0.3633 0.5137 -0.8901 34 1 2.2492 -1.6318 -1.1525 35 1 3.2473 -2.3966 -4.2421 36 1 1.8681 1.0326 2.4888 37 1 0.4372 -0.0253 2.5096 38 1 3.1531 -0.7030 3.7274 39 1 1.7165 -0.1774 4.6387 40 1 0.4639 -2.1536 3.8873 41 1 2.0029 -2.6851 4.6127 42 1 1.0816 -4.1045 5.0327 43 1 2.8509 -5.6994 8.0131 44 1 0.4392 -5.1254 8.5502 45 1 0.0629 -5.0200 6.7479 46 1 0.7562 -7.4433 6.4616 47 1 1.1326 -7.5485 8.2640 48 1 5.7163 -5.1025 3.2474 49 1 5.3664 -6.8348 3.4592 50 1 4.5760 -5.9205 2.1525 51 1 1.9720 -2.7098 0.4154 52 1 0.4439 -2.1718 1.1558 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319812957.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:28:41 Heat of formation + Delta-G solvation = 87.428390 kcal Electronic energy + Delta-G solvation = -31410.021955 eV Core-core repulsion = 27412.685016 eV Total energy + Delta-G solvation = -3997.336938 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.77578 -40.00970 -37.89824 -37.41070 -35.55434 -33.37604 -32.85117 -31.87537 -31.25498 -29.57543 -27.83880 -27.44012 -25.82577 -24.49941 -23.64936 -23.14059 -22.80877 -22.27513 -21.08633 -20.61213 -18.98874 -18.65024 -17.51219 -17.05524 -16.65409 -16.23913 -15.98840 -15.40030 -14.99036 -14.75697 -14.66388 -14.58022 -14.17796 -14.02113 -13.76445 -13.50540 -13.08895 -12.97039 -12.85883 -12.76619 -12.68851 -12.40782 -12.17306 -11.92915 -11.78759 -11.55074 -11.31827 -11.05347 -10.99151 -10.90167 -10.84195 -10.61473 -10.47984 -10.44756 -10.25700 -10.22819 -10.00925 -9.79657 -9.52439 -9.15946 -8.94742 -8.87917 -8.49400 -6.92329 -5.71144 -3.00772 1.21918 2.18773 2.30277 3.01025 3.10388 3.45702 3.50529 3.52562 3.55218 4.08824 4.30605 4.57796 4.60462 4.66332 4.75499 4.78172 4.91959 4.95413 5.04014 5.05499 5.12495 5.21361 5.27466 5.33729 5.35200 5.43378 5.48215 5.54901 5.59750 5.61261 5.64531 5.76923 5.82576 5.84385 5.85969 5.87041 5.95716 6.07630 6.12147 6.24905 6.27002 6.35516 6.39142 6.55412 6.57383 6.63197 6.75285 6.89334 7.13006 7.37501 7.73814 7.90764 8.12173 8.46573 9.57489 10.15444 10.49347 11.50960 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016497 B = 0.002617 C = 0.002365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.912752 B =10694.865376 C =11835.255226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.180 3.820 3 H 0.049 0.951 4 N -0.725 5.725 5 C -0.239 4.239 6 H 0.070 0.930 7 C -0.013 4.013 8 N -0.930 5.930 9 Si 0.904 3.096 10 H -0.291 1.291 11 H -0.292 1.292 12 H -0.283 1.283 13 C -0.102 4.102 14 H 0.073 0.927 15 C -0.115 4.115 16 C -0.133 4.133 17 C 0.090 3.910 18 N -0.593 5.593 19 C 0.584 3.416 20 O -0.526 6.526 21 C -0.023 4.023 22 C -0.191 4.191 23 C 0.052 3.948 24 C -0.072 4.072 25 C -0.167 4.167 26 C -0.168 4.168 27 N -0.274 5.274 28 N -0.257 5.257 29 C 0.081 3.919 30 C 0.118 3.882 31 H 0.048 0.952 32 H 0.039 0.961 33 H 0.052 0.948 34 H 0.385 0.615 35 H 0.255 0.745 36 H 0.065 0.935 37 H 0.068 0.932 38 H 0.065 0.935 39 H 0.073 0.927 40 H 0.071 0.929 41 H 0.098 0.902 42 H 0.164 0.836 43 H 0.118 0.882 44 H 0.101 0.899 45 H 0.098 0.902 46 H 0.095 0.905 47 H 0.099 0.901 48 H 0.084 0.916 49 H 0.096 0.904 50 H 0.113 0.887 51 H 0.103 0.897 52 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.501 -4.980 24.917 25.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.070 3.930 3 H 0.067 0.933 4 N -0.368 5.368 5 C -0.370 4.370 6 H 0.087 0.913 7 C -0.209 4.209 8 N -0.578 5.578 9 Si 0.736 3.264 10 H -0.218 1.218 11 H -0.218 1.218 12 H -0.208 1.208 13 C -0.123 4.123 14 H 0.092 0.908 15 C -0.153 4.153 16 C -0.171 4.171 17 C -0.033 4.033 18 N -0.325 5.325 19 C 0.370 3.630 20 O -0.402 6.402 21 C -0.152 4.152 22 C -0.220 4.220 23 C -0.104 4.104 24 C -0.091 4.091 25 C -0.204 4.204 26 C -0.206 4.206 27 N -0.107 5.107 28 N -0.044 5.044 29 C -0.059 4.059 30 C -0.003 4.003 31 H 0.067 0.933 32 H 0.058 0.942 33 H 0.071 0.929 34 H 0.219 0.781 35 H 0.065 0.935 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.083 0.917 39 H 0.092 0.908 40 H 0.089 0.911 41 H 0.116 0.884 42 H 0.181 0.819 43 H 0.136 0.864 44 H 0.119 0.881 45 H 0.117 0.883 46 H 0.113 0.887 47 H 0.117 0.883 48 H 0.103 0.897 49 H 0.115 0.885 50 H 0.131 0.869 51 H 0.121 0.879 52 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.186 -5.847 24.242 25.033 hybrid contribution -0.415 0.719 -1.156 1.423 sum -2.600 -5.128 23.086 23.791 Atomic orbital electron populations 1.22576 0.99503 1.00843 1.00020 1.20174 0.91836 0.95305 0.85717 0.93282 1.42517 1.78137 1.10804 1.05305 1.19215 1.36668 0.93809 0.87357 0.91252 1.24748 1.02233 0.95945 0.98012 1.69670 1.50705 1.08569 1.28821 0.86232 0.77718 0.78584 0.83889 1.21820 1.21843 1.20836 1.21770 1.00999 0.94045 0.95437 0.90832 1.21638 1.00926 0.99254 0.93509 1.21993 1.01362 0.94932 0.98831 1.22365 1.00375 0.94058 0.86500 1.47854 1.55413 1.20867 1.08409 1.16986 0.78815 0.80940 0.86299 1.90868 1.49336 1.67288 1.32735 1.21491 0.94254 1.01736 0.97704 1.22131 1.02854 1.04926 0.92051 1.20970 0.93562 0.99634 0.96257 1.20002 0.92418 1.05055 0.91655 1.23003 0.95871 0.98448 1.03089 1.22996 1.02442 0.91651 1.03488 1.73079 1.21034 1.22042 0.94552 1.45571 1.18507 1.30566 1.09723 1.22408 0.86808 1.03100 0.93590 1.21907 0.99960 0.93507 0.84940 0.93337 0.94193 0.92869 0.78054 0.93521 0.91594 0.91318 0.91663 0.90837 0.91101 0.88430 0.81900 0.86442 0.88071 0.88320 0.88670 0.88308 0.89736 0.88509 0.86859 0.87913 0.90788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.89 8.80 37.16 0.33 -2.57 16 2 C 0.18 3.44 2.72 -67.93 -0.19 3.26 16 3 H 0.05 0.97 8.08 -51.92 -0.42 0.55 16 4 N -0.73 -18.03 5.04 -53.42 -0.27 -18.30 16 5 C -0.24 -6.64 9.93 -15.05 -0.15 -6.79 16 6 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 7 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 8 N -0.93 -28.61 13.06 55.49 0.72 -27.89 16 9 Si 0.90 22.63 29.55 -169.99 -5.02 17.61 16 10 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 11 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 12 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 13 C -0.10 -1.63 2.33 -90.50 -0.21 -1.84 16 14 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 15 C -0.12 -1.37 4.77 -26.69 -0.13 -1.50 16 16 C -0.13 -1.33 6.10 -26.39 -0.16 -1.49 16 17 C 0.09 0.92 5.20 -3.49 -0.02 0.90 16 18 N -0.59 -8.36 2.97 -173.87 -0.52 -8.88 16 19 C 0.58 9.30 7.51 -12.64 -0.09 9.20 16 20 O -0.53 -10.31 14.59 5.25 0.08 -10.24 16 21 C -0.02 -0.31 6.38 -82.06 -0.52 -0.84 16 22 C -0.19 -2.14 7.88 -38.99 -0.31 -2.45 16 23 C 0.05 0.59 6.85 -82.47 -0.57 0.03 16 24 C -0.07 -0.60 6.33 -91.77 -0.58 -1.18 16 25 C -0.17 -1.05 10.02 -26.73 -0.27 -1.32 16 26 C -0.17 -1.21 10.23 -26.73 -0.27 -1.49 16 27 N -0.27 -3.61 11.90 33.64 0.40 -3.21 16 28 N -0.26 -3.44 3.75 -63.88 -0.24 -3.68 16 29 C 0.08 0.89 10.99 59.85 0.66 1.55 16 30 C 0.12 1.93 5.22 -3.71 -0.02 1.91 16 31 H 0.05 0.83 6.32 -51.93 -0.33 0.50 16 32 H 0.04 0.55 6.46 -51.93 -0.34 0.22 16 33 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.38 10.32 6.16 -40.82 -0.25 10.07 16 35 H 0.25 7.62 8.31 -40.82 -0.34 7.29 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.07 0.76 6.50 -51.93 -0.34 0.42 16 38 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.10 0.92 4.36 -51.93 -0.23 0.69 16 42 H 0.16 1.42 5.96 -52.48 -0.31 1.11 16 43 H 0.12 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.10 0.61 7.22 -51.93 -0.37 0.23 16 46 H 0.09 0.78 8.14 -51.92 -0.42 0.36 16 47 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 48 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 49 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 50 H 0.11 1.42 6.46 -51.93 -0.34 1.08 16 51 H 0.10 2.10 5.59 -51.93 -0.29 1.81 16 52 H 0.07 1.15 6.19 -51.93 -0.32 0.83 16 LS Contribution 402.08 15.07 6.06 6.06 Total: -1.00 -33.83 402.08 -9.54 -43.37 By element: Atomic # 1 Polarization: 18.41 SS G_CDS: -8.15 Total: 10.26 kcal Atomic # 6 Polarization: -2.51 SS G_CDS: -2.60 Total: -5.10 kcal Atomic # 7 Polarization: -62.05 SS G_CDS: 0.10 Total: -61.95 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: 0.08 Total: -10.24 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.02 Total: 17.61 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -33.83 -9.54 -43.37 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319812957.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.794 kcal (2) G-P(sol) polarization free energy of solvation -33.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.365 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds