Wall clock time and date at job start Wed Apr 1 2020 05:28:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09009 * 109.47004 * 2 1 4 4 N 1.46494 * 109.47490 * 239.99637 * 2 1 3 5 5 C 1.36945 * 119.99825 * 84.99766 * 4 2 1 6 6 H 1.07993 * 120.00159 * 0.02562 * 5 4 2 7 7 C 1.38814 * 119.99611 * 180.02562 * 5 4 2 8 8 N 1.31618 * 120.00554 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 119.99515 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47348 * 89.99935 * 9 7 5 11 11 H 1.48505 * 109.46872 * 209.99871 * 9 7 5 12 12 H 1.48502 * 109.47028 * 329.99502 * 9 7 5 13 13 C 1.52998 * 109.47192 * 119.99636 * 2 1 3 14 14 H 1.09000 * 109.50265 * 180.02562 * 13 2 1 15 15 C 1.53048 * 109.49824 * 300.16663 * 13 2 1 16 16 C 1.53032 * 109.53864 * 181.31649 * 15 13 2 17 17 C 1.53627 * 109.24401 * 298.50898 * 16 15 13 18 18 N 1.46924 * 108.54154 * 54.85414 * 17 16 15 19 19 C 1.34776 * 120.62761 * 126.37146 * 18 17 16 20 20 O 1.21633 * 119.99735 * 188.68798 * 19 18 17 21 21 C 1.47160 * 120.00145 * 8.68156 * 19 18 17 22 22 C 1.38404 * 126.88411 * 27.75367 * 21 19 18 23 23 C 1.39670 * 105.36295 * 180.02562 * 22 21 19 24 24 C 1.50697 * 126.07165 * 179.97438 * 23 22 21 25 25 C 1.52999 * 117.51512 * 16.28920 * 24 23 22 26 26 C 1.53002 * 117.49926 * 84.91823 * 24 23 22 27 27 N 1.30868 * 107.86055 * 0.23301 * 23 22 21 28 28 N 1.28446 * 110.92471 * 359.60461 * 27 23 22 29 29 C 1.46506 * 125.19045 * 180.16576 * 28 27 23 30 30 C 1.46927 * 118.74007 * 306.09839 * 18 17 16 31 31 H 1.09002 * 109.46383 * 179.97438 * 1 2 3 32 32 H 1.08992 * 109.47396 * 300.00217 * 1 2 3 33 33 H 1.08998 * 109.46835 * 60.00856 * 1 2 3 34 34 H 0.96999 * 120.00328 * 265.00323 * 4 2 1 35 35 H 0.96995 * 120.00152 * 179.97438 * 8 7 5 36 36 H 1.08997 * 109.45631 * 301.33746 * 15 13 2 37 37 H 1.08997 * 109.46147 * 61.29484 * 15 13 2 38 38 H 1.09001 * 109.49996 * 58.58580 * 16 15 13 39 39 H 1.09007 * 109.49738 * 178.68341 * 16 15 13 40 40 H 1.08994 * 109.73884 * 295.12241 * 17 16 15 41 41 H 1.08998 * 109.66542 * 174.55303 * 17 16 15 42 42 H 1.08004 * 127.31881 * 0.04373 * 22 21 19 43 43 H 1.09001 * 115.55148 * 230.58546 * 24 23 22 44 44 H 1.09005 * 117.49473 * 214.96492 * 25 24 23 45 45 H 1.08991 * 117.50194 * 359.97438 * 25 24 23 46 46 H 1.09011 * 117.49472 * 359.97438 * 26 24 23 47 47 H 1.08991 * 117.50448 * 144.99452 * 26 24 23 48 48 H 1.08998 * 109.46711 * 264.63564 * 29 28 27 49 49 H 1.09007 * 109.46749 * 24.62926 * 29 28 27 50 50 H 1.08993 * 109.47401 * 144.63053 * 29 28 27 51 51 H 1.09003 * 109.58531 * 173.64854 * 30 18 17 52 52 H 1.08994 * 109.58669 * 293.92559 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0278 0.0000 4 7 2.0185 -0.6906 -1.1960 5 6 2.1492 -0.0075 -2.3757 6 1 1.8927 1.0404 -2.4242 7 6 2.6115 -0.6621 -3.5092 8 7 2.9247 -1.9391 -3.4500 9 14 2.7906 0.2699 -5.1182 10 1 4.1532 0.8541 -5.2029 11 1 2.5796 -0.6612 -6.2557 12 1 1.7812 1.3576 -5.1751 13 6 2.0401 -0.7212 1.2493 14 1 3.1301 -0.7210 1.2500 15 6 1.5268 -0.0025 2.4993 16 6 2.0633 -0.7037 3.7493 17 6 1.5484 -2.1508 3.7784 18 7 1.9181 -2.8037 2.5152 19 6 2.5957 -3.9688 2.5170 20 8 3.0335 -4.4193 1.4755 21 6 2.8060 -4.6957 3.7792 22 6 1.9959 -4.6641 4.9009 23 6 2.6118 -5.5100 5.8261 24 6 2.1164 -5.8155 7.2161 25 6 0.6617 -5.4692 7.5400 26 6 1.0800 -6.9308 7.3675 27 7 3.6984 -5.9859 5.2735 28 7 3.8402 -5.5363 4.0787 29 6 4.9454 -5.8699 3.1767 30 6 1.5298 -2.1656 1.2500 31 1 -0.3632 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 -0.3633 0.5137 -0.8901 34 1 2.2492 -1.6318 -1.1525 35 1 3.2473 -2.3966 -4.2421 36 1 1.8681 1.0326 2.4888 37 1 0.4372 -0.0253 2.5096 38 1 3.1531 -0.7030 3.7274 39 1 1.7165 -0.1774 4.6387 40 1 0.4639 -2.1536 3.8873 41 1 2.0029 -2.6851 4.6127 42 1 1.0816 -4.1045 5.0327 43 1 2.8509 -5.6994 8.0131 44 1 0.4392 -5.1254 8.5502 45 1 0.0629 -5.0200 6.7479 46 1 0.7562 -7.4433 6.4616 47 1 1.1326 -7.5485 8.2640 48 1 5.7163 -5.1025 3.2474 49 1 5.3664 -6.8348 3.4592 50 1 4.5760 -5.9205 2.1525 51 1 1.9720 -2.7098 0.4154 52 1 0.4439 -2.1718 1.1558 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319812957.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:28:39 Heat of formation + Delta-G solvation = 66.146562 kcal Electronic energy + Delta-G solvation = -31410.944804 eV Core-core repulsion = 27412.685016 eV Total energy + Delta-G solvation = -3998.259788 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -43.72506 -41.19774 -39.17621 -38.05995 -37.02434 -34.84825 -33.95596 -33.23379 -32.38287 -31.15715 -29.33679 -28.31334 -26.92670 -26.23080 -24.79659 -24.29381 -23.61459 -23.02746 -22.22586 -21.61157 -20.19612 -19.71350 -19.25624 -18.36389 -17.70115 -17.29559 -16.97455 -16.70221 -16.33181 -16.05727 -15.65355 -15.53438 -15.37031 -15.25277 -15.18972 -14.89071 -14.30138 -14.18514 -14.00274 -13.86181 -13.79352 -13.55131 -13.33191 -12.98617 -12.89406 -12.83577 -12.64377 -12.36197 -12.25006 -12.16553 -12.01284 -11.86871 -11.78636 -11.71272 -11.50734 -11.42194 -11.21602 -11.17041 -11.06177 -10.92574 -10.17576 -9.80882 -9.65061 -8.99878 -7.92198 -5.21183 0.17490 1.21786 1.43587 1.44633 1.46871 1.55183 1.92299 1.98364 2.56039 2.96344 3.20926 3.40635 3.43318 3.73690 3.86667 3.89336 3.92920 4.05134 4.07651 4.12769 4.16500 4.18337 4.23568 4.30627 4.36626 4.40173 4.46265 4.53709 4.60557 4.64244 4.71258 4.75148 4.82978 4.88760 4.89677 4.92292 5.10232 5.11453 5.12656 5.15659 5.25789 5.27759 5.36491 5.37855 5.41604 5.45853 5.49809 5.55487 5.63841 5.71059 6.23620 6.29233 6.89055 7.01826 7.34330 8.13514 8.34033 9.31208 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016497 B = 0.002617 C = 0.002365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.912752 B =10694.865376 C =11835.255226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.172 3.828 3 H 0.046 0.954 4 N -0.741 5.741 5 C -0.234 4.234 6 H 0.078 0.922 7 C -0.082 4.082 8 N -0.973 5.973 9 Si 0.971 3.029 10 H -0.289 1.289 11 H -0.299 1.299 12 H -0.266 1.266 13 C -0.090 4.090 14 H 0.042 0.958 15 C -0.108 4.108 16 C -0.127 4.127 17 C 0.083 3.917 18 N -0.588 5.588 19 C 0.577 3.423 20 O -0.580 6.580 21 C -0.046 4.046 22 C -0.172 4.172 23 C 0.051 3.949 24 C -0.090 4.090 25 C -0.147 4.147 26 C -0.171 4.171 27 N -0.292 5.292 28 N -0.269 5.269 29 C 0.080 3.920 30 C 0.127 3.873 31 H 0.044 0.956 32 H 0.084 0.916 33 H 0.032 0.968 34 H 0.370 0.630 35 H 0.248 0.752 36 H 0.075 0.925 37 H 0.090 0.910 38 H 0.048 0.952 39 H 0.114 0.886 40 H 0.103 0.897 41 H 0.109 0.891 42 H 0.194 0.806 43 H 0.126 0.874 44 H 0.124 0.876 45 H 0.103 0.897 46 H 0.081 0.919 47 H 0.114 0.886 48 H 0.092 0.908 49 H 0.117 0.883 50 H 0.091 0.909 51 H 0.050 0.950 52 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.766 -3.139 28.562 29.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.063 3.937 3 H 0.064 0.936 4 N -0.382 5.382 5 C -0.366 4.366 6 H 0.096 0.904 7 C -0.274 4.274 8 N -0.624 5.624 9 Si 0.801 3.199 10 H -0.217 1.217 11 H -0.226 1.226 12 H -0.191 1.191 13 C -0.111 4.111 14 H 0.060 0.940 15 C -0.146 4.146 16 C -0.165 4.165 17 C -0.037 4.037 18 N -0.319 5.319 19 C 0.365 3.635 20 O -0.460 6.460 21 C -0.175 4.175 22 C -0.201 4.201 23 C -0.105 4.105 24 C -0.109 4.109 25 C -0.184 4.184 26 C -0.209 4.209 27 N -0.125 5.125 28 N -0.056 5.056 29 C -0.060 4.060 30 C 0.005 3.995 31 H 0.063 0.937 32 H 0.102 0.898 33 H 0.051 0.949 34 H 0.202 0.798 35 H 0.057 0.943 36 H 0.093 0.907 37 H 0.108 0.892 38 H 0.067 0.933 39 H 0.132 0.868 40 H 0.121 0.879 41 H 0.127 0.873 42 H 0.211 0.789 43 H 0.144 0.856 44 H 0.142 0.858 45 H 0.122 0.878 46 H 0.099 0.901 47 H 0.132 0.868 48 H 0.110 0.890 49 H 0.136 0.864 50 H 0.109 0.891 51 H 0.069 0.931 52 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -4.488 -3.934 27.959 28.589 hybrid contribution 0.270 0.158 -2.168 2.190 sum -4.218 -3.776 25.791 26.405 Atomic orbital electron populations 1.22399 0.97082 1.00991 1.01195 1.20477 0.93385 0.94826 0.84967 0.93594 1.42800 1.78503 1.10366 1.06542 1.19652 1.34433 0.94167 0.88333 0.90403 1.25590 1.03342 0.96831 1.01634 1.69862 1.52918 1.10391 1.29230 0.85161 0.77846 0.77441 0.79467 1.21675 1.22577 1.19068 1.21597 0.99053 0.94043 0.96362 0.93988 1.21629 1.02059 0.99231 0.91701 1.21995 1.00420 0.94753 0.99339 1.22748 1.02453 0.93942 0.84566 1.47921 1.54547 1.20284 1.09123 1.17392 0.78291 0.81324 0.86512 1.90843 1.51601 1.68759 1.34776 1.21360 0.95748 1.02863 0.97516 1.22472 1.02911 1.04130 0.90545 1.21547 0.92764 0.98769 0.97443 1.20145 0.93808 1.06901 0.90069 1.23145 0.93602 0.97180 1.04461 1.23051 1.01883 0.92421 1.03582 1.73080 1.22270 1.22548 0.94562 1.45745 1.18944 1.30863 1.10082 1.22428 0.86619 1.04538 0.92396 1.21608 1.00061 0.93171 0.84695 0.93686 0.89759 0.94855 0.79758 0.94336 0.90655 0.89202 0.93315 0.86791 0.87876 0.87268 0.78942 0.85643 0.85831 0.87827 0.90088 0.86780 0.89002 0.86427 0.89068 0.93107 0.89458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.09 8.80 71.98 0.63 -4.46 16 2 C 0.17 6.55 2.72 44.99 0.12 6.68 16 3 H 0.05 1.78 8.08 -2.38 -0.02 1.76 16 4 N -0.74 -38.27 5.04 -322.93 -1.63 -39.90 16 5 C -0.23 -13.26 9.93 84.03 0.83 -12.43 16 6 H 0.08 4.19 7.83 -2.91 -0.02 4.17 16 7 C -0.08 -4.90 5.50 84.86 0.47 -4.43 16 8 N -0.97 -62.79 13.06 21.65 0.28 -62.51 16 9 Si 0.97 47.69 29.55 68.60 2.03 49.71 16 10 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 11 H -0.30 -14.88 7.11 99.48 0.71 -14.17 16 12 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 13 C -0.09 -2.87 2.33 -10.71 -0.02 -2.89 16 14 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 15 C -0.11 -2.21 4.77 30.62 0.15 -2.06 16 16 C -0.13 -2.06 6.10 30.82 0.19 -1.87 16 17 C 0.08 1.42 5.20 86.51 0.45 1.87 16 18 N -0.59 -16.39 2.97 -822.25 -2.44 -18.83 16 19 C 0.58 19.18 7.51 86.59 0.65 19.83 16 20 O -0.58 -24.86 14.59 -4.13 -0.06 -24.92 16 21 C -0.05 -1.27 6.38 40.79 0.26 -1.01 16 22 C -0.17 -3.50 7.88 22.66 0.18 -3.32 16 23 C 0.05 1.07 6.85 43.05 0.30 1.37 16 24 C -0.09 -1.26 6.33 -11.54 -0.07 -1.34 16 25 C -0.15 -1.27 10.02 30.59 0.31 -0.96 16 26 C -0.17 -2.03 10.23 30.60 0.31 -1.72 16 27 N -0.29 -7.54 11.90 -47.50 -0.57 -8.11 16 28 N -0.27 -7.36 3.75 -356.01 -1.33 -8.69 16 29 C 0.08 1.90 10.99 127.77 1.40 3.30 16 30 C 0.13 4.24 5.22 86.36 0.45 4.69 16 31 H 0.04 1.48 6.32 -2.39 -0.02 1.47 16 32 H 0.08 1.98 6.46 -2.39 -0.02 1.97 16 33 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.37 21.19 6.16 -92.71 -0.57 20.62 16 35 H 0.25 15.59 8.31 -92.71 -0.77 14.82 16 36 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.09 1.51 6.50 -2.39 -0.02 1.49 16 38 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.11 1.06 8.14 -2.38 -0.02 1.04 16 40 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.11 1.66 4.36 -2.39 -0.01 1.65 16 42 H 0.19 2.56 5.96 -2.91 -0.02 2.54 16 43 H 0.13 1.57 8.14 -2.39 -0.02 1.55 16 44 H 0.12 0.56 8.14 -2.38 -0.02 0.54 16 45 H 0.10 0.81 7.22 -2.39 -0.02 0.80 16 46 H 0.08 1.20 8.14 -2.38 -0.02 1.18 16 47 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 48 H 0.09 1.96 8.14 -2.39 -0.02 1.95 16 49 H 0.12 2.17 8.14 -2.38 -0.02 2.16 16 50 H 0.09 2.59 6.46 -2.39 -0.02 2.57 16 51 H 0.05 2.26 5.59 -2.39 -0.01 2.25 16 52 H 0.09 2.65 6.19 -2.39 -0.01 2.64 16 Total: -1.00 -79.77 402.08 3.25 -76.52 By element: Atomic # 1 Polarization: 35.12 SS G_CDS: 0.37 Total: 35.48 kcal Atomic # 6 Polarization: -5.36 SS G_CDS: 6.60 Total: 1.24 kcal Atomic # 7 Polarization: -132.35 SS G_CDS: -5.68 Total: -138.04 kcal Atomic # 8 Polarization: -24.86 SS G_CDS: -0.06 Total: -24.92 kcal Atomic # 14 Polarization: 47.69 SS G_CDS: 2.03 Total: 49.71 kcal Total: -79.77 3.25 -76.52 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319812957.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.668 kcal (2) G-P(sol) polarization free energy of solvation -79.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.521 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds