Wall clock time and date at job start Wed Apr 1 2020 05:35:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 N 1.46497 * 109.47188 * 119.99573 * 2 1 3 5 5 C 1.36940 * 120.00565 * 275.00309 * 4 2 1 6 6 H 1.08004 * 119.99402 * 359.97438 * 5 4 2 7 7 C 1.38815 * 120.00150 * 179.97438 * 5 4 2 8 8 N 1.31618 * 120.00111 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99847 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47120 * 59.99555 * 9 7 5 11 11 H 1.48500 * 109.47078 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.46925 * 300.00019 * 9 7 5 13 13 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 14 14 H 1.09000 * 110.89009 * 302.43004 * 13 2 1 15 15 C 1.55161 * 111.00538 * 66.35005 * 13 2 1 16 16 C 1.54324 * 102.94659 * 153.57675 * 15 13 2 17 17 N 1.47021 * 107.26807 * 337.81026 * 16 15 13 18 18 C 1.34781 * 125.64586 * 178.90620 * 17 16 15 19 19 O 1.21575 * 119.99919 * 180.02562 * 18 17 16 20 20 C 1.47701 * 120.00002 * 0.03396 * 18 17 16 21 21 C 1.41507 * 126.51867 * 180.02562 * 20 18 17 22 22 C 1.35360 * 105.50313 * 180.02562 * 21 20 18 23 23 N 1.35036 * 107.23121 * 0.02562 * 22 21 20 24 24 C 1.46500 * 124.88702 * 179.97438 * 23 22 21 25 25 C 1.54275 * 110.02934 * 32.16874 * 24 23 22 26 26 C 1.54889 * 104.19261 * 217.10544 * 25 24 23 27 27 C 1.54888 * 102.75116 * 37.94314 * 26 25 24 28 28 C 1.53871 * 110.03558 * 275.00204 * 24 23 22 29 29 N 1.28463 * 110.22998 * 359.72665 * 23 22 21 30 30 C 1.47430 * 108.70591 * 358.93965 * 17 16 15 31 31 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 33 33 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 34 34 H 0.97006 * 119.99921 * 94.99902 * 4 2 1 35 35 H 0.96997 * 119.99796 * 179.97438 * 8 7 5 36 36 H 1.09004 * 110.72171 * 271.94450 * 15 13 2 37 37 H 1.09001 * 110.71941 * 35.21432 * 15 13 2 38 38 H 1.08996 * 109.88039 * 218.39390 * 16 15 13 39 39 H 1.08999 * 110.01041 * 97.29307 * 16 15 13 40 40 H 1.07993 * 127.24669 * 0.02562 * 21 20 18 41 41 H 1.08001 * 126.38721 * 179.97438 * 22 21 20 42 42 H 1.08999 * 110.01736 * 153.60417 * 24 23 22 43 43 H 1.09000 * 110.48867 * 335.78043 * 25 24 23 44 44 H 1.08999 * 110.48667 * 98.42742 * 25 24 23 45 45 H 1.09001 * 110.75441 * 279.62653 * 26 25 24 46 46 H 1.09006 * 110.75684 * 156.26015 * 26 25 24 47 47 H 1.09004 * 110.48227 * 203.38163 * 27 26 25 48 48 H 1.08992 * 110.48908 * 80.73851 * 27 26 25 49 49 H 1.09000 * 110.03570 * 238.56732 * 28 24 23 50 50 H 1.09000 * 110.02941 * 359.95120 * 28 24 23 51 51 H 1.09002 * 110.36158 * 265.28892 * 30 17 16 52 52 H 1.08995 * 110.46129 * 143.01668 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1491 -0.0074 2.3758 6 1 1.8926 1.0406 2.4241 7 6 2.6113 -0.6619 3.5094 8 7 2.9234 -1.9392 3.4505 9 14 2.7890 0.2698 5.1186 10 1 1.4665 0.8066 5.5284 11 1 3.2981 -0.6485 6.1687 12 1 3.7443 1.3923 4.9378 13 6 2.0400 -0.7212 -1.2491 14 1 1.6548 -1.7399 -1.2943 15 6 1.6776 0.0687 -2.5345 16 6 2.7767 -0.3640 -3.5277 17 7 3.9165 -0.8465 -2.7343 18 6 5.0703 -1.3335 -3.2325 19 8 5.9486 -1.7060 -2.4789 20 6 5.2677 -1.4144 -4.6940 21 6 6.4165 -1.8995 -5.3630 22 6 6.1433 -1.7808 -6.6834 23 7 4.9041 -1.2550 -6.7899 24 6 4.2235 -0.9631 -8.0539 25 6 4.6519 -1.9802 -9.1319 26 6 4.7266 -1.1446 -10.4340 27 6 5.3086 0.2038 -9.9419 28 6 4.6409 0.4254 -8.5690 29 7 4.4058 -1.0524 -5.6233 30 6 3.5881 -0.7103 -1.3035 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 0.5139 0.8900 34 1 2.2490 -1.6317 1.1527 35 1 3.2468 -2.3964 4.2425 36 1 0.6921 -0.2202 -2.8998 37 1 1.7231 1.1426 -2.3528 38 1 3.0824 0.4871 -4.1361 39 1 2.4062 -1.1639 -4.1687 40 1 7.3207 -2.2835 -4.9144 41 1 6.7953 -2.0547 -7.4997 42 1 3.1432 -0.9999 -7.9132 43 1 5.6282 -2.4014 -8.8924 44 1 3.9075 -2.7705 -9.2280 45 1 3.7334 -1.0042 -10.8603 46 1 5.3953 -1.6135 -11.1560 47 1 5.0433 1.0072 -10.6292 48 1 6.3909 0.1353 -9.8333 49 1 3.7632 1.0623 -8.6790 50 1 5.3493 0.8825 -7.8780 51 1 3.9748 0.2313 -0.9136 52 1 3.9935 -1.5492 -0.7379 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325409232.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:35:52 Heat of formation + Delta-G solvation = 53.363438 kcal Electronic energy + Delta-G solvation = -30538.216342 eV Core-core repulsion = 26539.402237 eV Total energy + Delta-G solvation = -3998.814106 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.88054 -39.66557 -38.53591 -37.48670 -35.07729 -32.78437 -32.31326 -31.03410 -30.32366 -29.41123 -28.76181 -28.28025 -27.71098 -24.44444 -23.77277 -22.66404 -22.05376 -21.37853 -21.10941 -20.05145 -19.54251 -19.13781 -17.88014 -17.19660 -16.72450 -16.45624 -15.97340 -15.52925 -15.17704 -15.01680 -14.61645 -14.28724 -14.02683 -13.67986 -13.58461 -13.55259 -13.21100 -12.93827 -12.74615 -12.57993 -12.46875 -12.16632 -12.06133 -11.88818 -11.82519 -11.79240 -11.57484 -11.44510 -11.27424 -11.23442 -10.88189 -10.80383 -10.66690 -10.49261 -10.42591 -10.16246 -9.90645 -9.75944 -9.54226 -9.36111 -9.16707 -8.83678 -8.31297 -6.88654 -5.68208 -2.97089 1.57167 2.04864 2.17763 3.22959 3.49737 3.54065 3.55209 3.56779 3.69454 3.85985 4.19493 4.37045 4.50495 4.60938 4.64093 4.70057 4.72522 4.78780 4.88196 4.92891 5.00359 5.12404 5.16695 5.24286 5.26767 5.38712 5.41990 5.53300 5.54560 5.57330 5.63684 5.64313 5.66589 5.74288 5.87193 5.99117 6.02748 6.04736 6.23161 6.25712 6.26453 6.43850 6.47825 6.53538 6.61990 6.69367 6.74818 6.92645 7.14879 7.71886 7.76723 7.83687 8.41313 8.49855 9.60958 10.18439 10.53012 11.54262 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.022268 B = 0.002082 C = 0.001968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.088639 B =13444.139659 C =14221.571834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.185 3.815 3 H 0.049 0.951 4 N -0.724 5.724 5 C -0.237 4.237 6 H 0.069 0.931 7 C -0.013 4.013 8 N -0.931 5.931 9 Si 0.905 3.095 10 H -0.287 1.287 11 H -0.292 1.292 12 H -0.286 1.286 13 C -0.101 4.101 14 H 0.080 0.920 15 C -0.126 4.126 16 C 0.114 3.886 17 N -0.606 5.606 18 C 0.611 3.389 19 O -0.532 6.532 20 C -0.008 4.008 21 C -0.178 4.178 22 C -0.022 4.022 23 N -0.279 5.279 24 C 0.144 3.856 25 C -0.137 4.137 26 C -0.122 4.122 27 C -0.125 4.125 28 C -0.136 4.136 29 N -0.257 5.257 30 C 0.121 3.879 31 H 0.045 0.955 32 H 0.037 0.963 33 H 0.053 0.947 34 H 0.384 0.616 35 H 0.255 0.745 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.066 0.934 39 H 0.068 0.932 40 H 0.161 0.839 41 H 0.178 0.822 42 H 0.111 0.889 43 H 0.083 0.917 44 H 0.082 0.918 45 H 0.074 0.926 46 H 0.076 0.924 47 H 0.073 0.927 48 H 0.070 0.930 49 H 0.083 0.917 50 H 0.076 0.924 51 H 0.072 0.928 52 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.881 2.534 -33.258 33.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.074 3.926 3 H 0.067 0.933 4 N -0.365 5.365 5 C -0.369 4.369 6 H 0.087 0.913 7 C -0.209 4.209 8 N -0.580 5.580 9 Si 0.736 3.264 10 H -0.214 1.214 11 H -0.218 1.218 12 H -0.213 1.213 13 C -0.121 4.121 14 H 0.098 0.902 15 C -0.165 4.165 16 C -0.009 4.009 17 N -0.339 5.339 18 C 0.397 3.603 19 O -0.407 6.407 20 C -0.168 4.168 21 C -0.206 4.206 22 C -0.164 4.164 23 N -0.067 5.067 24 C 0.043 3.957 25 C -0.175 4.175 26 C -0.160 4.160 27 C -0.163 4.163 28 C -0.175 4.175 29 N -0.092 5.092 30 C 0.000 4.000 31 H 0.065 0.935 32 H 0.056 0.944 33 H 0.072 0.928 34 H 0.218 0.782 35 H 0.065 0.935 36 H 0.097 0.903 37 H 0.095 0.905 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.179 0.821 41 H 0.195 0.805 42 H 0.129 0.871 43 H 0.102 0.898 44 H 0.101 0.899 45 H 0.093 0.907 46 H 0.095 0.905 47 H 0.092 0.908 48 H 0.089 0.911 49 H 0.101 0.899 50 H 0.095 0.905 51 H 0.091 0.909 52 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 1.321 2.895 -32.958 33.112 hybrid contribution 0.897 -0.187 0.980 1.342 sum 2.218 2.708 -31.978 32.169 Atomic orbital electron populations 1.22432 0.99144 1.00845 0.99907 1.20155 0.91859 0.95155 0.85390 0.93331 1.42416 1.78144 1.10734 1.05254 1.19156 1.36650 0.93760 0.87304 0.91309 1.24732 1.02232 0.95958 0.98005 1.69648 1.50771 1.08603 1.28930 0.86299 0.77661 0.78630 0.83763 1.21409 1.21780 1.21321 1.22663 0.94090 1.00257 0.95138 0.90169 1.22720 0.97845 1.00852 0.95033 1.21998 0.86082 0.99070 0.93760 1.48391 1.15070 1.61584 1.08887 1.16517 0.81281 0.77770 0.84744 1.90826 1.42033 1.49407 1.58472 1.21965 0.94056 1.07298 0.93517 1.21776 1.00498 1.06642 0.91712 1.22659 0.89571 1.05452 0.98757 1.45753 1.11785 1.43890 1.05290 1.22312 0.98291 0.96187 0.78900 1.22846 1.03287 0.97573 0.93796 1.22486 1.01911 0.95246 0.96343 1.22388 1.00414 0.97730 0.95740 1.22594 1.02070 0.95230 0.97558 1.73645 1.25259 1.20147 0.90139 1.22276 0.95133 1.03172 0.79432 0.93544 0.94423 0.92823 0.78242 0.93502 0.90267 0.90548 0.91566 0.91411 0.82116 0.80508 0.87065 0.89811 0.89939 0.90686 0.90525 0.90793 0.91145 0.89879 0.90510 0.90933 0.89685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.87 9.34 37.16 0.35 -2.53 16 2 C 0.18 3.60 2.40 -67.94 -0.16 3.43 16 3 H 0.05 0.97 8.05 -51.93 -0.42 0.55 16 4 N -0.72 -18.08 4.82 -53.43 -0.26 -18.34 16 5 C -0.24 -6.62 9.93 -15.06 -0.15 -6.77 16 6 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 7 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 8 N -0.93 -28.71 13.06 55.49 0.72 -27.98 16 9 Si 0.91 22.88 29.55 -169.99 -5.02 17.86 16 10 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 11 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 12 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 13 C -0.10 -1.69 2.62 -88.47 -0.23 -1.92 16 14 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 15 C -0.13 -1.63 5.59 -24.89 -0.14 -1.77 16 16 C 0.11 1.53 5.55 -3.06 -0.02 1.52 16 17 N -0.61 -10.24 3.33 -171.68 -0.57 -10.81 16 18 C 0.61 11.10 7.86 -12.39 -0.10 11.00 16 19 O -0.53 -11.52 17.18 5.30 0.09 -11.43 16 20 C -0.01 -0.12 6.98 -82.76 -0.58 -0.70 16 21 C -0.18 -2.21 10.81 -39.36 -0.43 -2.64 16 22 C -0.02 -0.20 10.39 -17.17 -0.18 -0.38 16 23 N -0.28 -2.66 3.14 -53.74 -0.17 -2.83 16 24 C 0.14 0.87 3.88 -66.81 -0.26 0.61 16 25 C -0.14 -0.54 6.35 -25.07 -0.16 -0.70 16 26 C -0.12 -0.33 6.91 -24.74 -0.17 -0.50 16 27 C -0.13 -0.43 6.83 -25.07 -0.17 -0.60 16 28 C -0.14 -0.69 6.60 -25.61 -0.17 -0.86 16 29 N -0.26 -3.26 9.50 33.42 0.32 -2.94 16 30 C 0.12 2.26 6.08 -2.53 -0.02 2.25 16 31 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.04 0.54 7.50 -51.93 -0.39 0.15 16 33 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 34 H 0.38 10.32 7.80 -40.82 -0.32 10.01 16 35 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 36 H 0.08 0.88 8.13 -51.93 -0.42 0.46 16 37 H 0.08 0.95 8.01 -51.93 -0.42 0.53 16 38 H 0.07 0.85 7.78 -51.93 -0.40 0.44 16 39 H 0.07 0.88 7.65 -51.93 -0.40 0.48 16 40 H 0.16 1.87 8.06 -52.49 -0.42 1.45 16 41 H 0.18 0.95 6.80 -52.49 -0.36 0.59 16 42 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.08 0.32 5.83 -51.93 -0.30 0.02 16 44 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 45 H 0.07 0.17 8.14 -51.93 -0.42 -0.25 16 46 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 47 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 48 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 49 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 50 H 0.08 0.53 7.92 -51.93 -0.41 0.12 16 51 H 0.07 1.43 8.04 -51.93 -0.42 1.01 16 52 H 0.08 1.83 8.04 -51.93 -0.42 1.41 16 LS Contribution 412.66 15.07 6.22 6.22 Total: -1.00 -34.51 412.66 -10.21 -44.72 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: -8.87 Total: 6.59 kcal Atomic # 6 Polarization: 1.63 SS G_CDS: -2.67 Total: -1.04 kcal Atomic # 7 Polarization: -62.95 SS G_CDS: 0.05 Total: -62.90 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: 0.09 Total: -11.43 kcal Atomic # 14 Polarization: 22.88 SS G_CDS: -5.02 Total: 17.86 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -34.51 -10.21 -44.72 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325409232.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.081 kcal (2) G-P(sol) polarization free energy of solvation -34.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.718 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds