Wall clock time and date at job start Wed Apr 1 2020 05:35:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 N 1.46497 * 109.47188 * 119.99573 * 2 1 3 5 5 C 1.36940 * 120.00565 * 275.00309 * 4 2 1 6 6 H 1.08004 * 119.99402 * 359.97438 * 5 4 2 7 7 C 1.38815 * 120.00150 * 179.97438 * 5 4 2 8 8 N 1.31618 * 120.00111 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99847 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47120 * 59.99555 * 9 7 5 11 11 H 1.48500 * 109.47078 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.46925 * 300.00019 * 9 7 5 13 13 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 14 14 H 1.09000 * 110.89009 * 302.43004 * 13 2 1 15 15 C 1.55161 * 111.00538 * 66.35005 * 13 2 1 16 16 C 1.54324 * 102.94659 * 153.57675 * 15 13 2 17 17 N 1.47021 * 107.26807 * 337.81026 * 16 15 13 18 18 C 1.34781 * 125.64586 * 178.90620 * 17 16 15 19 19 O 1.21575 * 119.99919 * 180.02562 * 18 17 16 20 20 C 1.47701 * 120.00002 * 0.03396 * 18 17 16 21 21 C 1.41507 * 126.51867 * 180.02562 * 20 18 17 22 22 C 1.35360 * 105.50313 * 180.02562 * 21 20 18 23 23 N 1.35036 * 107.23121 * 0.02562 * 22 21 20 24 24 C 1.46500 * 124.88702 * 179.97438 * 23 22 21 25 25 C 1.54275 * 110.02934 * 32.16874 * 24 23 22 26 26 C 1.54889 * 104.19261 * 217.10544 * 25 24 23 27 27 C 1.54888 * 102.75116 * 37.94314 * 26 25 24 28 28 C 1.53871 * 110.03558 * 275.00204 * 24 23 22 29 29 N 1.28463 * 110.22998 * 359.72665 * 23 22 21 30 30 C 1.47430 * 108.70591 * 358.93965 * 17 16 15 31 31 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 33 33 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 34 34 H 0.97006 * 119.99921 * 94.99902 * 4 2 1 35 35 H 0.96997 * 119.99796 * 179.97438 * 8 7 5 36 36 H 1.09004 * 110.72171 * 271.94450 * 15 13 2 37 37 H 1.09001 * 110.71941 * 35.21432 * 15 13 2 38 38 H 1.08996 * 109.88039 * 218.39390 * 16 15 13 39 39 H 1.08999 * 110.01041 * 97.29307 * 16 15 13 40 40 H 1.07993 * 127.24669 * 0.02562 * 21 20 18 41 41 H 1.08001 * 126.38721 * 179.97438 * 22 21 20 42 42 H 1.08999 * 110.01736 * 153.60417 * 24 23 22 43 43 H 1.09000 * 110.48867 * 335.78043 * 25 24 23 44 44 H 1.08999 * 110.48667 * 98.42742 * 25 24 23 45 45 H 1.09001 * 110.75441 * 279.62653 * 26 25 24 46 46 H 1.09006 * 110.75684 * 156.26015 * 26 25 24 47 47 H 1.09004 * 110.48227 * 203.38163 * 27 26 25 48 48 H 1.08992 * 110.48908 * 80.73851 * 27 26 25 49 49 H 1.09000 * 110.03570 * 238.56732 * 28 24 23 50 50 H 1.09000 * 110.02941 * 359.95120 * 28 24 23 51 51 H 1.09002 * 110.36158 * 265.28892 * 30 17 16 52 52 H 1.08995 * 110.46129 * 143.01668 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1491 -0.0074 2.3758 6 1 1.8926 1.0406 2.4241 7 6 2.6113 -0.6619 3.5094 8 7 2.9234 -1.9392 3.4505 9 14 2.7890 0.2698 5.1186 10 1 1.4665 0.8066 5.5284 11 1 3.2981 -0.6485 6.1687 12 1 3.7443 1.3923 4.9378 13 6 2.0400 -0.7212 -1.2491 14 1 1.6548 -1.7399 -1.2943 15 6 1.6776 0.0687 -2.5345 16 6 2.7767 -0.3640 -3.5277 17 7 3.9165 -0.8465 -2.7343 18 6 5.0703 -1.3335 -3.2325 19 8 5.9486 -1.7060 -2.4789 20 6 5.2677 -1.4144 -4.6940 21 6 6.4165 -1.8995 -5.3630 22 6 6.1433 -1.7808 -6.6834 23 7 4.9041 -1.2550 -6.7899 24 6 4.2235 -0.9631 -8.0539 25 6 4.6519 -1.9802 -9.1319 26 6 4.7266 -1.1446 -10.4340 27 6 5.3086 0.2038 -9.9419 28 6 4.6409 0.4254 -8.5690 29 7 4.4058 -1.0524 -5.6233 30 6 3.5881 -0.7103 -1.3035 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 0.5139 0.8900 34 1 2.2490 -1.6317 1.1527 35 1 3.2468 -2.3964 4.2425 36 1 0.6921 -0.2202 -2.8998 37 1 1.7231 1.1426 -2.3528 38 1 3.0824 0.4871 -4.1361 39 1 2.4062 -1.1639 -4.1687 40 1 7.3207 -2.2835 -4.9144 41 1 6.7953 -2.0547 -7.4997 42 1 3.1432 -0.9999 -7.9132 43 1 5.6282 -2.4014 -8.8924 44 1 3.9075 -2.7705 -9.2280 45 1 3.7334 -1.0042 -10.8603 46 1 5.3953 -1.6135 -11.1560 47 1 5.0433 1.0072 -10.6292 48 1 6.3909 0.1353 -9.8333 49 1 3.7632 1.0623 -8.6790 50 1 5.3493 0.8825 -7.8780 51 1 3.9748 0.2313 -0.9136 52 1 3.9935 -1.5492 -0.7379 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325409232.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:35:51 Heat of formation + Delta-G solvation = 31.942276 kcal Electronic energy + Delta-G solvation = -30539.145234 eV Core-core repulsion = 26539.402237 eV Total energy + Delta-G solvation = -3999.742997 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -43.75150 -41.01232 -39.16043 -38.77458 -36.79015 -34.33490 -33.42433 -32.19639 -31.63585 -30.03282 -29.87134 -29.70605 -28.58727 -25.96853 -25.45302 -23.41311 -23.09399 -22.82407 -21.46573 -21.08340 -20.67201 -20.32454 -19.17227 -18.58094 -17.91532 -17.40992 -17.16746 -16.61601 -16.38666 -16.07523 -15.68257 -15.54597 -15.37868 -15.13421 -14.64051 -14.49478 -14.30286 -14.18167 -13.97552 -13.85980 -13.57444 -13.38023 -13.11983 -13.06284 -12.86241 -12.69832 -12.64474 -12.36899 -12.24848 -12.11049 -12.05178 -12.02011 -11.93081 -11.76562 -11.68921 -11.51930 -11.47593 -11.39094 -11.25878 -10.91220 -10.24644 -10.10279 -9.67688 -8.97498 -7.90504 -5.18301 0.48897 1.15227 1.42886 1.46238 1.49849 1.55449 1.96646 2.29700 2.57849 3.15754 3.40037 3.44476 3.51758 3.62515 3.70457 3.83284 3.86009 3.88036 4.05527 4.20224 4.31813 4.32882 4.40366 4.43016 4.44728 4.49325 4.56574 4.64565 4.65260 4.70314 4.74267 4.76813 4.86787 4.87716 4.91337 4.98956 5.02388 5.06030 5.09016 5.12766 5.21061 5.22631 5.25196 5.29733 5.40092 5.41877 5.43417 5.54708 5.66082 5.89783 6.31203 6.42850 6.81280 7.08030 7.36820 8.14635 8.36144 9.33015 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.022268 B = 0.002082 C = 0.001968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.088639 B =13444.139659 C =14221.571834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.180 3.820 3 H 0.047 0.953 4 N -0.738 5.738 5 C -0.231 4.231 6 H 0.077 0.923 7 C -0.082 4.082 8 N -0.972 5.972 9 Si 0.970 3.030 10 H -0.275 1.275 11 H -0.299 1.299 12 H -0.281 1.281 13 C -0.091 4.091 14 H 0.076 0.924 15 C -0.111 4.111 16 C 0.118 3.882 17 N -0.607 5.607 18 C 0.601 3.399 19 O -0.585 6.585 20 C -0.042 4.042 21 C -0.203 4.203 22 C 0.003 3.997 23 N -0.266 5.266 24 C 0.134 3.866 25 C -0.133 4.133 26 C -0.115 4.115 27 C -0.122 4.122 28 C -0.133 4.133 29 N -0.258 5.258 30 C 0.125 3.875 31 H 0.041 0.959 32 H 0.081 0.919 33 H 0.035 0.965 34 H 0.370 0.630 35 H 0.248 0.752 36 H 0.112 0.888 37 H 0.089 0.911 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.158 0.842 41 H 0.221 0.779 42 H 0.116 0.884 43 H 0.088 0.912 44 H 0.088 0.912 45 H 0.082 0.918 46 H 0.088 0.912 47 H 0.081 0.919 48 H 0.070 0.930 49 H 0.090 0.910 50 H 0.056 0.944 51 H 0.056 0.944 52 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.368 3.960 -37.214 37.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.071 3.929 3 H 0.065 0.935 4 N -0.378 5.378 5 C -0.363 4.363 6 H 0.095 0.905 7 C -0.273 4.273 8 N -0.623 5.623 9 Si 0.800 3.200 10 H -0.201 1.201 11 H -0.226 1.226 12 H -0.207 1.207 13 C -0.111 4.111 14 H 0.094 0.906 15 C -0.149 4.149 16 C -0.004 4.004 17 N -0.339 5.339 18 C 0.390 3.610 19 O -0.464 6.464 20 C -0.200 4.200 21 C -0.231 4.231 22 C -0.140 4.140 23 N -0.055 5.055 24 C 0.035 3.965 25 C -0.172 4.172 26 C -0.153 4.153 27 C -0.160 4.160 28 C -0.171 4.171 29 N -0.096 5.096 30 C 0.003 3.997 31 H 0.060 0.940 32 H 0.099 0.901 33 H 0.054 0.946 34 H 0.201 0.799 35 H 0.057 0.943 36 H 0.131 0.869 37 H 0.108 0.892 38 H 0.097 0.903 39 H 0.096 0.904 40 H 0.176 0.824 41 H 0.237 0.763 42 H 0.134 0.866 43 H 0.106 0.894 44 H 0.106 0.894 45 H 0.100 0.900 46 H 0.106 0.894 47 H 0.100 0.900 48 H 0.089 0.911 49 H 0.109 0.891 50 H 0.075 0.925 51 H 0.074 0.926 52 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -0.257 4.383 -36.976 37.236 hybrid contribution 1.355 -0.579 2.010 2.492 sum 1.098 3.804 -34.966 35.189 Atomic orbital electron populations 1.22260 0.96761 1.00958 1.01163 1.20414 0.93321 0.94713 0.84418 0.93464 1.42654 1.78491 1.10242 1.06393 1.19573 1.34434 0.94122 0.88220 0.90485 1.25553 1.03376 0.96880 1.01534 1.69826 1.52902 1.10282 1.29288 0.85255 0.77961 0.77221 0.79610 1.20144 1.22592 1.20702 1.22487 0.92039 1.00539 0.95992 0.90557 1.22751 0.99142 1.00939 0.92081 1.22163 0.84869 0.99740 0.93646 1.48489 1.15825 1.61229 1.08353 1.17104 0.80814 0.76867 0.86217 1.90773 1.43752 1.51745 1.60152 1.21576 0.96013 1.10415 0.92014 1.21946 1.00176 1.07838 0.93166 1.23154 0.89400 1.02967 0.98456 1.46212 1.11969 1.41938 1.05404 1.22761 0.98449 0.97625 0.77706 1.22884 1.03618 0.97260 0.93401 1.22477 1.02588 0.94396 0.95813 1.22387 1.00325 0.98537 0.94727 1.22576 1.02046 0.94470 0.98051 1.73545 1.25040 1.20140 0.90848 1.22031 0.96764 1.00415 0.80514 0.94003 0.90062 0.94592 0.79910 0.94324 0.86916 0.89236 0.90328 0.90397 0.82429 0.76294 0.86635 0.89353 0.89374 0.89971 0.89388 0.89995 0.91100 0.89147 0.92493 0.92592 0.93944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.04 9.34 71.98 0.67 -4.36 16 2 C 0.18 6.92 2.40 44.99 0.11 7.03 16 3 H 0.05 1.84 8.05 -2.39 -0.02 1.82 16 4 N -0.74 -37.89 4.82 -322.95 -1.56 -39.44 16 5 C -0.23 -13.12 9.93 84.03 0.83 -12.28 16 6 H 0.08 4.15 7.83 -2.91 -0.02 4.13 16 7 C -0.08 -4.86 5.50 84.86 0.47 -4.40 16 8 N -0.97 -62.30 13.06 21.65 0.28 -62.02 16 9 Si 0.97 48.06 29.55 68.60 2.03 50.08 16 10 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 11 H -0.30 -15.07 7.11 99.48 0.71 -14.37 16 12 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 13 C -0.09 -2.99 2.62 -9.40 -0.02 -3.01 16 14 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 15 C -0.11 -2.55 5.59 31.78 0.18 -2.37 16 16 C 0.12 2.97 5.55 86.73 0.48 3.46 16 17 N -0.61 -21.21 3.33 -815.34 -2.71 -23.92 16 18 C 0.60 23.17 7.86 86.74 0.68 23.85 16 19 O -0.58 -27.54 17.18 -3.95 -0.07 -27.61 16 20 C -0.04 -1.29 6.98 42.45 0.30 -0.99 16 21 C -0.20 -5.05 10.81 22.41 0.24 -4.81 16 22 C 0.00 0.05 10.39 83.54 0.87 0.91 16 23 N -0.27 -4.52 3.14 -323.94 -1.02 -5.53 16 24 C 0.13 1.22 3.88 45.72 0.18 1.40 16 25 C -0.13 -0.57 6.35 31.67 0.20 -0.37 16 26 C -0.11 -0.19 6.91 31.88 0.22 0.03 16 27 C -0.12 -0.44 6.83 31.67 0.22 -0.22 16 28 C -0.13 -1.00 6.60 31.32 0.21 -0.80 16 29 N -0.26 -6.28 9.50 -48.18 -0.46 -6.73 16 30 C 0.13 4.95 6.08 86.85 0.53 5.48 16 31 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.08 2.00 7.50 -2.39 -0.02 1.98 16 33 H 0.03 1.31 8.14 -2.38 -0.02 1.29 16 34 H 0.37 20.87 7.80 -92.70 -0.72 20.15 16 35 H 0.25 15.55 8.31 -92.71 -0.77 14.78 16 36 H 0.11 1.94 8.13 -2.39 -0.02 1.92 16 37 H 0.09 1.89 8.01 -2.39 -0.02 1.87 16 38 H 0.08 1.84 7.78 -2.39 -0.02 1.82 16 39 H 0.08 1.85 7.65 -2.39 -0.02 1.83 16 40 H 0.16 3.87 8.06 -2.91 -0.02 3.84 16 41 H 0.22 1.49 6.80 -2.91 -0.02 1.47 16 42 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.09 0.32 5.83 -2.39 -0.01 0.30 16 44 H 0.09 0.33 8.14 -2.39 -0.02 0.31 16 45 H 0.08 0.06 8.14 -2.39 -0.02 0.04 16 46 H 0.09 0.01 8.14 -2.38 -0.02 -0.01 16 47 H 0.08 0.20 8.14 -2.39 -0.02 0.18 16 48 H 0.07 0.27 8.14 -2.39 -0.02 0.25 16 49 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 50 H 0.06 0.68 7.92 -2.39 -0.02 0.67 16 51 H 0.06 2.35 8.04 -2.39 -0.02 2.33 16 52 H 0.04 2.01 8.04 -2.39 -0.02 1.99 16 Total: -1.00 -80.60 412.66 3.04 -77.56 By element: Atomic # 1 Polarization: 28.88 SS G_CDS: 0.18 Total: 29.07 kcal Atomic # 6 Polarization: 2.19 SS G_CDS: 6.35 Total: 8.54 kcal Atomic # 7 Polarization: -132.19 SS G_CDS: -5.46 Total: -137.65 kcal Atomic # 8 Polarization: -27.54 SS G_CDS: -0.07 Total: -27.61 kcal Atomic # 14 Polarization: 48.06 SS G_CDS: 2.03 Total: 50.08 kcal Total: -80.60 3.04 -77.56 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325409232.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.506 kcal (2) G-P(sol) polarization free energy of solvation -80.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.564 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds