Wall clock time and date at job start Wed Apr 1 2020 05:35:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47465 * 2 1 4 4 N 1.46499 * 109.47489 * 239.99621 * 2 1 3 5 5 C 1.36936 * 119.99891 * 84.99979 * 4 2 1 6 6 H 1.07995 * 120.00288 * 359.97438 * 5 4 2 7 7 C 1.38820 * 119.99907 * 180.02562 * 5 4 2 8 8 N 1.31617 * 119.99582 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 119.99922 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47015 * 89.99911 * 9 7 5 11 11 H 1.48498 * 109.47193 * 209.99837 * 9 7 5 12 12 H 1.48497 * 109.47420 * 330.00381 * 9 7 5 13 13 C 1.53002 * 109.47027 * 119.99767 * 2 1 3 14 14 H 1.09000 * 110.88950 * 57.57226 * 13 2 1 15 15 C 1.55160 * 111.00107 * 293.65118 * 13 2 1 16 16 C 1.54323 * 102.94127 * 206.42505 * 15 13 2 17 17 N 1.47192 * 107.29513 * 22.28167 * 16 15 13 18 18 C 1.34775 * 125.73680 * 181.03325 * 17 16 15 19 19 O 1.21566 * 119.99870 * 179.86338 * 18 17 16 20 20 C 1.47717 * 119.99844 * 359.85906 * 18 17 16 21 21 C 1.41502 * 126.51351 * 180.02562 * 20 18 17 22 22 C 1.35364 * 105.49773 * 179.97438 * 21 20 18 23 23 N 1.35031 * 107.22989 * 359.97438 * 22 21 20 24 24 C 1.46503 * 124.88073 * 180.02562 * 23 22 21 25 25 C 1.54265 * 110.03371 * 32.17309 * 24 23 22 26 26 C 1.54894 * 104.19781 * 217.10264 * 25 24 23 27 27 C 1.54888 * 102.74421 * 37.94053 * 26 25 24 28 28 C 1.53870 * 110.03488 * 275.00294 * 24 23 22 29 29 N 1.28457 * 110.23278 * 359.75128 * 23 22 21 30 30 C 1.47425 * 108.61291 * 0.91225 * 17 16 15 31 31 H 1.09009 * 109.46919 * 60.00097 * 1 2 3 32 32 H 1.09000 * 109.47465 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47415 * 300.00409 * 1 2 3 34 34 H 0.97001 * 119.99971 * 265.01053 * 4 2 1 35 35 H 0.97000 * 119.99840 * 180.02562 * 8 7 5 36 36 H 1.09004 * 110.71965 * 324.78457 * 15 13 2 37 37 H 1.08991 * 110.72311 * 87.88604 * 15 13 2 38 38 H 1.08999 * 109.88854 * 141.60703 * 16 15 13 39 39 H 1.09001 * 109.88086 * 262.62061 * 16 15 13 40 40 H 1.07997 * 127.25167 * 359.97438 * 21 20 18 41 41 H 1.08007 * 126.37958 * 179.97438 * 22 21 20 42 42 H 1.09002 * 110.01207 * 153.60866 * 24 23 22 43 43 H 1.09002 * 110.48513 * 335.78256 * 25 24 23 44 44 H 1.09005 * 110.49133 * 98.42106 * 25 24 23 45 45 H 1.08997 * 110.75519 * 279.62642 * 26 25 24 46 46 H 1.08993 * 110.75774 * 156.25449 * 26 25 24 47 47 H 1.09011 * 110.48220 * 203.38287 * 27 26 25 48 48 H 1.08998 * 110.48669 * 80.73959 * 27 26 25 49 49 H 1.09002 * 110.03189 * 238.56922 * 28 24 23 50 50 H 1.09002 * 110.03197 * 359.95488 * 28 24 23 51 51 H 1.09002 * 110.36696 * 217.11260 * 30 17 16 52 52 H 1.08995 * 110.36608 * 94.90096 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1492 -0.0076 -2.3757 6 1 1.8919 1.0401 -2.4244 7 6 2.6115 -0.6622 -3.5092 8 7 2.9245 -1.9392 -3.4499 9 14 2.7893 0.2694 -5.1185 10 1 4.1515 0.8545 -5.2038 11 1 2.5785 -0.6621 -6.2556 12 1 1.7793 1.3565 -5.1754 13 6 2.0399 -0.7212 1.2493 14 1 1.6546 -1.7398 1.2945 15 6 1.6774 0.0690 2.5345 16 6 2.7764 -0.3637 3.5277 17 7 3.9188 -0.8449 2.7340 18 6 5.0737 -1.3304 3.2309 19 8 5.9511 -1.7028 2.4763 20 6 5.2735 -1.4098 4.6923 21 6 6.4241 -1.8923 5.3599 22 6 6.1527 -1.7730 6.6806 23 7 4.9127 -1.2493 6.7885 24 6 4.2336 -0.9576 8.0533 25 6 5.2653 -0.5510 9.1257 26 6 4.7224 -1.1796 10.4330 27 6 4.1584 -2.5389 9.9500 28 6 3.5297 -2.2215 8.5775 29 7 4.4166 -1.0385 5.6225 30 6 3.5880 -0.7102 1.3037 31 1 -0.3633 0.5139 -0.8901 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3634 0.5139 0.8899 34 1 2.2490 -1.6319 -1.1525 35 1 3.2479 -2.3965 -4.2419 36 1 1.7229 1.1428 2.3527 37 1 0.6907 -0.2177 2.8980 38 1 3.0822 0.4874 4.1362 39 1 2.4032 -1.1625 4.1687 40 1 7.3284 -2.2750 4.9103 41 1 6.8062 -2.0458 7.4961 42 1 3.5071 -0.1575 7.9108 43 1 6.2469 -0.9594 8.8849 44 1 5.3144 0.5342 9.2159 45 1 3.9312 -0.5625 10.8588 46 1 5.5269 -1.3291 11.1530 47 1 3.3994 -2.9045 10.6419 48 1 4.9611 -3.2684 9.8425 49 1 2.4618 -2.0346 8.6902 50 1 3.6928 -3.0518 7.8903 51 1 3.9934 -1.5504 0.7398 52 1 3.9747 0.2305 0.9119 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325409233.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:35:57 Heat of formation + Delta-G solvation = 53.266335 kcal Electronic energy + Delta-G solvation = -30542.303083 eV Core-core repulsion = 26543.484767 eV Total energy + Delta-G solvation = -3998.818316 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.88155 -39.65788 -38.53441 -37.48726 -35.07413 -32.78364 -32.31377 -31.03412 -30.32645 -29.40905 -28.75934 -28.28221 -27.70977 -24.44536 -23.77497 -22.66424 -22.05426 -21.37822 -21.10741 -20.05095 -19.54341 -19.13680 -17.87528 -17.19351 -16.79555 -16.38132 -15.93312 -15.57304 -15.25018 -14.95491 -14.61965 -14.23399 -14.07478 -13.66152 -13.59835 -13.55159 -13.21031 -12.93841 -12.75057 -12.58038 -12.46847 -12.17110 -12.05373 -11.89088 -11.82151 -11.79058 -11.57324 -11.44481 -11.27532 -11.23099 -10.88803 -10.81032 -10.67547 -10.48510 -10.43033 -10.14187 -9.90522 -9.75627 -9.54658 -9.36086 -9.16684 -8.84309 -8.31458 -6.88743 -5.68566 -2.97342 1.57274 2.04932 2.17763 3.22645 3.49358 3.54061 3.55801 3.56872 3.69523 3.86116 4.19600 4.36976 4.50496 4.60944 4.64025 4.69951 4.72704 4.78846 4.88071 4.93091 5.00385 5.12311 5.16481 5.24300 5.26874 5.38818 5.42375 5.53494 5.54652 5.57389 5.63588 5.64443 5.66647 5.74225 5.87036 5.99022 6.02643 6.04817 6.22980 6.25650 6.26327 6.43804 6.47721 6.53356 6.61972 6.69185 6.74612 6.92523 7.14730 7.71886 7.77114 7.83658 8.41355 8.49487 9.60721 10.18214 10.52791 11.53991 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.022350 B = 0.002087 C = 0.001968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.496016 B =13411.576339 C =14222.648397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.185 3.815 3 H 0.049 0.951 4 N -0.724 5.724 5 C -0.237 4.237 6 H 0.070 0.930 7 C -0.014 4.014 8 N -0.931 5.931 9 Si 0.905 3.095 10 H -0.290 1.290 11 H -0.292 1.292 12 H -0.283 1.283 13 C -0.101 4.101 14 H 0.080 0.920 15 C -0.126 4.126 16 C 0.114 3.886 17 N -0.606 5.606 18 C 0.611 3.389 19 O -0.532 6.532 20 C -0.008 4.008 21 C -0.178 4.178 22 C -0.022 4.022 23 N -0.279 5.279 24 C 0.144 3.856 25 C -0.137 4.137 26 C -0.122 4.122 27 C -0.125 4.125 28 C -0.136 4.136 29 N -0.257 5.257 30 C 0.121 3.879 31 H 0.053 0.947 32 H 0.045 0.955 33 H 0.037 0.963 34 H 0.384 0.616 35 H 0.255 0.745 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.066 0.934 39 H 0.068 0.932 40 H 0.161 0.839 41 H 0.178 0.822 42 H 0.111 0.889 43 H 0.083 0.917 44 H 0.082 0.918 45 H 0.074 0.926 46 H 0.076 0.924 47 H 0.073 0.927 48 H 0.070 0.930 49 H 0.083 0.917 50 H 0.076 0.924 51 H 0.084 0.916 52 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.469 1.630 33.281 33.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.074 3.926 3 H 0.067 0.933 4 N -0.366 5.366 5 C -0.368 4.368 6 H 0.087 0.913 7 C -0.210 4.210 8 N -0.579 5.579 9 Si 0.736 3.264 10 H -0.218 1.218 11 H -0.219 1.219 12 H -0.209 1.209 13 C -0.121 4.121 14 H 0.098 0.902 15 C -0.165 4.165 16 C -0.009 4.009 17 N -0.340 5.340 18 C 0.397 3.603 19 O -0.407 6.407 20 C -0.168 4.168 21 C -0.206 4.206 22 C -0.164 4.164 23 N -0.067 5.067 24 C 0.043 3.957 25 C -0.175 4.175 26 C -0.160 4.160 27 C -0.163 4.163 28 C -0.175 4.175 29 N -0.092 5.092 30 C 0.000 4.000 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.056 0.944 34 H 0.218 0.782 35 H 0.064 0.936 36 H 0.094 0.906 37 H 0.097 0.903 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.179 0.821 41 H 0.195 0.805 42 H 0.129 0.871 43 H 0.102 0.898 44 H 0.100 0.900 45 H 0.093 0.907 46 H 0.095 0.905 47 H 0.092 0.908 48 H 0.089 0.911 49 H 0.101 0.899 50 H 0.095 0.905 51 H 0.103 0.897 52 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.901 2.006 32.984 33.057 hybrid contribution 0.906 -0.208 -0.983 1.353 sum 1.806 1.798 32.001 32.102 Atomic orbital electron populations 1.22431 0.99138 1.00844 0.99913 1.20158 0.91861 0.95155 0.85386 0.93324 1.42423 1.78130 1.10731 1.05274 1.19200 1.36525 0.93787 0.87284 0.91251 1.24735 1.02263 0.95954 0.98018 1.69660 1.50820 1.08609 1.28841 0.86222 0.77755 0.78554 0.83846 1.21769 1.21892 1.20876 1.22664 0.94079 1.00253 0.95142 0.90172 1.22717 0.97839 1.00863 0.95052 1.22016 0.86023 0.99084 0.93754 1.48424 1.14972 1.61669 1.08892 1.16511 0.81270 0.77758 0.84748 1.90824 1.42137 1.49380 1.58392 1.21966 0.94085 1.07269 0.93513 1.21777 1.00403 1.06731 0.91723 1.22661 0.89454 1.05585 0.98747 1.45750 1.11834 1.43837 1.05292 1.22311 0.95190 0.99306 0.78878 1.22846 0.98674 1.02140 0.93836 1.22485 1.00902 0.96288 0.96308 1.22390 1.00585 0.97528 0.95773 1.22596 1.00609 0.96741 0.97522 1.73638 1.25394 1.20016 0.90145 1.22273 0.95121 1.03179 0.79456 0.92820 0.93542 0.94421 0.78244 0.93558 0.90564 0.90260 0.91546 0.91412 0.82116 0.80507 0.87073 0.89815 0.89959 0.90690 0.90528 0.90785 0.91138 0.89872 0.90487 0.89716 0.90925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.87 9.34 37.16 0.35 -2.52 16 2 C 0.18 3.59 2.40 -67.93 -0.16 3.43 16 3 H 0.05 0.97 8.05 -51.93 -0.42 0.55 16 4 N -0.72 -18.07 4.82 -53.43 -0.26 -18.33 16 5 C -0.24 -6.60 9.93 -15.06 -0.15 -6.74 16 6 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 7 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 8 N -0.93 -28.71 13.06 55.49 0.72 -27.98 16 9 Si 0.90 22.88 29.55 -169.99 -5.02 17.86 16 10 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 11 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 12 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 13 C -0.10 -1.69 2.62 -88.47 -0.23 -1.92 16 14 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 15 C -0.13 -1.63 5.59 -24.89 -0.14 -1.77 16 16 C 0.11 1.54 5.55 -2.97 -0.02 1.52 16 17 N -0.61 -10.24 3.33 -171.54 -0.57 -10.81 16 18 C 0.61 11.10 7.86 -12.39 -0.10 11.00 16 19 O -0.53 -11.53 17.18 5.31 0.09 -11.43 16 20 C -0.01 -0.12 6.98 -82.76 -0.58 -0.70 16 21 C -0.18 -2.21 10.81 -39.36 -0.43 -2.64 16 22 C -0.02 -0.20 10.39 -17.17 -0.18 -0.38 16 23 N -0.28 -2.66 3.14 -53.74 -0.17 -2.83 16 24 C 0.14 0.87 3.88 -66.81 -0.26 0.61 16 25 C -0.14 -0.53 6.35 -25.07 -0.16 -0.69 16 26 C -0.12 -0.33 6.91 -24.74 -0.17 -0.50 16 27 C -0.13 -0.43 6.83 -25.07 -0.17 -0.61 16 28 C -0.14 -0.71 6.60 -25.61 -0.17 -0.87 16 29 N -0.26 -3.26 9.52 33.42 0.32 -2.94 16 30 C 0.12 2.26 6.08 -2.53 -0.02 2.24 16 31 H 0.05 1.03 8.14 -51.92 -0.42 0.60 16 32 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.04 0.54 7.50 -51.93 -0.39 0.15 16 34 H 0.38 10.32 7.80 -40.82 -0.32 10.00 16 35 H 0.25 7.64 8.31 -40.82 -0.34 7.30 16 36 H 0.08 0.94 8.01 -51.93 -0.42 0.53 16 37 H 0.08 0.88 8.13 -51.93 -0.42 0.46 16 38 H 0.07 0.85 7.76 -51.93 -0.40 0.45 16 39 H 0.07 0.88 7.68 -51.93 -0.40 0.48 16 40 H 0.16 1.87 8.06 -52.49 -0.42 1.45 16 41 H 0.18 0.95 6.80 -52.48 -0.36 0.59 16 42 H 0.11 0.65 8.14 -51.93 -0.42 0.22 16 43 H 0.08 0.32 5.83 -51.93 -0.30 0.02 16 44 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 45 H 0.07 0.17 8.14 -51.93 -0.42 -0.25 16 46 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 47 H 0.07 0.21 8.14 -51.92 -0.42 -0.21 16 48 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 49 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 50 H 0.08 0.55 7.92 -51.93 -0.41 0.14 16 51 H 0.08 1.82 8.04 -51.93 -0.42 1.41 16 52 H 0.07 1.43 8.03 -51.93 -0.42 1.01 16 LS Contribution 412.69 15.07 6.22 6.22 Total: -1.00 -34.54 412.69 -10.21 -44.75 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: -8.87 Total: 6.55 kcal Atomic # 6 Polarization: 1.63 SS G_CDS: -2.67 Total: -1.04 kcal Atomic # 7 Polarization: -62.94 SS G_CDS: 0.05 Total: -62.90 kcal Atomic # 8 Polarization: -11.53 SS G_CDS: 0.09 Total: -11.43 kcal Atomic # 14 Polarization: 22.88 SS G_CDS: -5.02 Total: 17.86 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -34.54 -10.21 -44.75 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325409233.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.018 kcal (2) G-P(sol) polarization free energy of solvation -34.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.751 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds