Wall clock time and date at job start Wed Apr 1 2020 05:35:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47465 * 2 1 4 4 N 1.46499 * 109.47489 * 239.99621 * 2 1 3 5 5 C 1.36936 * 119.99891 * 84.99979 * 4 2 1 6 6 H 1.07995 * 120.00288 * 359.97438 * 5 4 2 7 7 C 1.38820 * 119.99907 * 180.02562 * 5 4 2 8 8 N 1.31617 * 119.99582 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 119.99922 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47015 * 89.99911 * 9 7 5 11 11 H 1.48498 * 109.47193 * 209.99837 * 9 7 5 12 12 H 1.48497 * 109.47420 * 330.00381 * 9 7 5 13 13 C 1.53002 * 109.47027 * 119.99767 * 2 1 3 14 14 H 1.09000 * 110.88950 * 57.57226 * 13 2 1 15 15 C 1.55160 * 111.00107 * 293.65118 * 13 2 1 16 16 C 1.54323 * 102.94127 * 206.42505 * 15 13 2 17 17 N 1.47192 * 107.29513 * 22.28167 * 16 15 13 18 18 C 1.34775 * 125.73680 * 181.03325 * 17 16 15 19 19 O 1.21566 * 119.99870 * 179.86338 * 18 17 16 20 20 C 1.47717 * 119.99844 * 359.85906 * 18 17 16 21 21 C 1.41502 * 126.51351 * 180.02562 * 20 18 17 22 22 C 1.35364 * 105.49773 * 179.97438 * 21 20 18 23 23 N 1.35031 * 107.22989 * 359.97438 * 22 21 20 24 24 C 1.46503 * 124.88073 * 180.02562 * 23 22 21 25 25 C 1.54265 * 110.03371 * 32.17309 * 24 23 22 26 26 C 1.54894 * 104.19781 * 217.10264 * 25 24 23 27 27 C 1.54888 * 102.74421 * 37.94053 * 26 25 24 28 28 C 1.53870 * 110.03488 * 275.00294 * 24 23 22 29 29 N 1.28457 * 110.23278 * 359.75128 * 23 22 21 30 30 C 1.47425 * 108.61291 * 0.91225 * 17 16 15 31 31 H 1.09009 * 109.46919 * 60.00097 * 1 2 3 32 32 H 1.09000 * 109.47465 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47415 * 300.00409 * 1 2 3 34 34 H 0.97001 * 119.99971 * 265.01053 * 4 2 1 35 35 H 0.97000 * 119.99840 * 180.02562 * 8 7 5 36 36 H 1.09004 * 110.71965 * 324.78457 * 15 13 2 37 37 H 1.08991 * 110.72311 * 87.88604 * 15 13 2 38 38 H 1.08999 * 109.88854 * 141.60703 * 16 15 13 39 39 H 1.09001 * 109.88086 * 262.62061 * 16 15 13 40 40 H 1.07997 * 127.25167 * 359.97438 * 21 20 18 41 41 H 1.08007 * 126.37958 * 179.97438 * 22 21 20 42 42 H 1.09002 * 110.01207 * 153.60866 * 24 23 22 43 43 H 1.09002 * 110.48513 * 335.78256 * 25 24 23 44 44 H 1.09005 * 110.49133 * 98.42106 * 25 24 23 45 45 H 1.08997 * 110.75519 * 279.62642 * 26 25 24 46 46 H 1.08993 * 110.75774 * 156.25449 * 26 25 24 47 47 H 1.09011 * 110.48220 * 203.38287 * 27 26 25 48 48 H 1.08998 * 110.48669 * 80.73959 * 27 26 25 49 49 H 1.09002 * 110.03189 * 238.56922 * 28 24 23 50 50 H 1.09002 * 110.03197 * 359.95488 * 28 24 23 51 51 H 1.09002 * 110.36696 * 217.11260 * 30 17 16 52 52 H 1.08995 * 110.36608 * 94.90096 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1492 -0.0076 -2.3757 6 1 1.8919 1.0401 -2.4244 7 6 2.6115 -0.6622 -3.5092 8 7 2.9245 -1.9392 -3.4499 9 14 2.7893 0.2694 -5.1185 10 1 4.1515 0.8545 -5.2038 11 1 2.5785 -0.6621 -6.2556 12 1 1.7793 1.3565 -5.1754 13 6 2.0399 -0.7212 1.2493 14 1 1.6546 -1.7398 1.2945 15 6 1.6774 0.0690 2.5345 16 6 2.7764 -0.3637 3.5277 17 7 3.9188 -0.8449 2.7340 18 6 5.0737 -1.3304 3.2309 19 8 5.9511 -1.7028 2.4763 20 6 5.2735 -1.4098 4.6923 21 6 6.4241 -1.8923 5.3599 22 6 6.1527 -1.7730 6.6806 23 7 4.9127 -1.2493 6.7885 24 6 4.2336 -0.9576 8.0533 25 6 5.2653 -0.5510 9.1257 26 6 4.7224 -1.1796 10.4330 27 6 4.1584 -2.5389 9.9500 28 6 3.5297 -2.2215 8.5775 29 7 4.4166 -1.0385 5.6225 30 6 3.5880 -0.7102 1.3037 31 1 -0.3633 0.5139 -0.8901 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3634 0.5139 0.8899 34 1 2.2490 -1.6319 -1.1525 35 1 3.2479 -2.3965 -4.2419 36 1 1.7229 1.1428 2.3527 37 1 0.6907 -0.2177 2.8980 38 1 3.0822 0.4874 4.1362 39 1 2.4032 -1.1625 4.1687 40 1 7.3284 -2.2750 4.9103 41 1 6.8062 -2.0458 7.4961 42 1 3.5071 -0.1575 7.9108 43 1 6.2469 -0.9594 8.8849 44 1 5.3144 0.5342 9.2159 45 1 3.9312 -0.5625 10.8588 46 1 5.5269 -1.3291 11.1530 47 1 3.3994 -2.9045 10.6419 48 1 4.9611 -3.2684 9.8425 49 1 2.4618 -2.0346 8.6902 50 1 3.6928 -3.0518 7.8903 51 1 3.9934 -1.5504 0.7398 52 1 3.9747 0.2305 0.9119 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325409233.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:35:56 Heat of formation + Delta-G solvation = 31.798006 kcal Electronic energy + Delta-G solvation = -30543.234020 eV Core-core repulsion = 26543.484767 eV Total energy + Delta-G solvation = -3999.749253 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -43.75248 -41.00478 -39.16033 -38.77543 -36.78731 -34.33445 -33.42448 -32.19743 -31.63705 -30.03294 -29.87036 -29.70553 -28.58685 -25.97106 -25.45486 -23.41333 -23.09410 -22.82286 -21.46703 -21.08258 -20.67215 -20.32344 -19.17601 -18.56359 -17.96479 -17.44132 -16.99216 -16.67420 -16.51625 -16.00948 -15.64205 -15.55726 -15.39404 -15.13315 -14.65127 -14.48707 -14.30748 -14.18450 -13.97415 -13.85997 -13.57162 -13.38146 -13.11945 -13.06713 -12.88079 -12.71526 -12.64576 -12.36945 -12.19209 -12.11205 -12.05799 -12.01915 -11.93106 -11.76136 -11.68800 -11.52144 -11.47504 -11.39272 -11.25843 -10.92697 -10.24649 -10.10295 -9.67829 -8.97690 -7.90868 -5.18570 0.49009 1.15250 1.42860 1.46177 1.48698 1.56344 1.96404 2.29767 2.57617 3.15742 3.39838 3.44347 3.51759 3.62483 3.70494 3.83221 3.85868 3.88044 4.05423 4.20058 4.31890 4.32838 4.40290 4.42945 4.44731 4.49315 4.56521 4.64586 4.65176 4.70350 4.74301 4.76858 4.86794 4.87671 4.91388 4.98902 5.02393 5.05983 5.09100 5.12638 5.20976 5.22609 5.25280 5.29659 5.40029 5.41732 5.43388 5.54926 5.66034 5.89803 6.31022 6.42769 6.81303 7.08076 7.36607 8.14373 8.35850 9.32895 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.022350 B = 0.002087 C = 0.001968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.496016 B =13411.576339 C =14222.648397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.180 3.820 3 H 0.048 0.952 4 N -0.738 5.738 5 C -0.230 4.230 6 H 0.078 0.922 7 C -0.082 4.082 8 N -0.972 5.972 9 Si 0.970 3.030 10 H -0.292 1.292 11 H -0.298 1.298 12 H -0.266 1.266 13 C -0.091 4.091 14 H 0.076 0.924 15 C -0.111 4.111 16 C 0.118 3.882 17 N -0.607 5.607 18 C 0.602 3.398 19 O -0.585 6.585 20 C -0.042 4.042 21 C -0.203 4.203 22 C 0.003 3.997 23 N -0.266 5.266 24 C 0.134 3.866 25 C -0.133 4.133 26 C -0.115 4.115 27 C -0.122 4.122 28 C -0.133 4.133 29 N -0.258 5.258 30 C 0.125 3.875 31 H 0.035 0.965 32 H 0.041 0.959 33 H 0.081 0.919 34 H 0.369 0.631 35 H 0.248 0.752 36 H 0.089 0.911 37 H 0.112 0.888 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.158 0.842 41 H 0.221 0.779 42 H 0.116 0.884 43 H 0.088 0.912 44 H 0.088 0.912 45 H 0.082 0.918 46 H 0.088 0.912 47 H 0.081 0.919 48 H 0.070 0.930 49 H 0.090 0.910 50 H 0.056 0.944 51 H 0.041 0.959 52 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.039 3.335 37.255 37.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.071 3.929 3 H 0.066 0.934 4 N -0.378 5.378 5 C -0.362 4.362 6 H 0.096 0.904 7 C -0.274 4.274 8 N -0.623 5.623 9 Si 0.799 3.201 10 H -0.220 1.220 11 H -0.225 1.225 12 H -0.191 1.191 13 C -0.111 4.111 14 H 0.094 0.906 15 C -0.149 4.149 16 C -0.004 4.004 17 N -0.339 5.339 18 C 0.390 3.610 19 O -0.464 6.464 20 C -0.200 4.200 21 C -0.231 4.231 22 C -0.140 4.140 23 N -0.055 5.055 24 C 0.035 3.965 25 C -0.171 4.171 26 C -0.153 4.153 27 C -0.160 4.160 28 C -0.172 4.172 29 N -0.096 5.096 30 C 0.003 3.997 31 H 0.054 0.946 32 H 0.060 0.940 33 H 0.099 0.901 34 H 0.201 0.799 35 H 0.057 0.943 36 H 0.108 0.892 37 H 0.131 0.869 38 H 0.098 0.902 39 H 0.096 0.904 40 H 0.176 0.824 41 H 0.237 0.763 42 H 0.134 0.866 43 H 0.106 0.894 44 H 0.107 0.893 45 H 0.100 0.900 46 H 0.106 0.894 47 H 0.100 0.900 48 H 0.089 0.911 49 H 0.108 0.892 50 H 0.074 0.926 51 H 0.060 0.940 52 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.595 3.772 37.020 37.217 hybrid contribution 1.329 -0.711 -2.018 2.519 sum 0.734 3.060 35.002 35.143 Atomic orbital electron populations 1.22259 0.96754 1.00957 1.01174 1.20418 0.93324 0.94722 0.84404 0.93429 1.42662 1.78467 1.10240 1.06419 1.19610 1.34268 0.94127 0.88190 0.90440 1.25554 1.03426 0.96875 1.01542 1.69833 1.52962 1.10298 1.29233 0.85183 0.77729 0.77498 0.79656 1.21965 1.22492 1.19074 1.22488 0.92029 1.00529 0.96009 0.90586 1.22748 0.99131 1.00962 0.92089 1.22182 0.84805 0.99760 0.93643 1.48522 1.15731 1.61307 1.08362 1.17098 0.80809 0.76852 0.86219 1.90771 1.43863 1.51719 1.60076 1.21577 0.96041 1.10386 0.92011 1.21948 1.00080 1.07930 0.93181 1.23155 0.89278 1.03108 0.98442 1.46209 1.11979 1.41922 1.05409 1.22760 0.96074 1.00005 0.77685 1.22883 0.98131 1.02711 0.93403 1.22475 1.01421 0.95565 0.95799 1.22390 1.00749 0.98110 0.94749 1.22579 1.01183 0.95414 0.98017 1.73539 1.25144 1.20036 0.90851 1.22030 0.96751 1.00416 0.80537 0.94581 0.94009 0.90056 0.79916 0.94337 0.89219 0.86924 0.90241 0.90447 0.82433 0.76290 0.86593 0.89352 0.89307 0.89954 0.89378 0.90019 0.91124 0.89162 0.92558 0.94003 0.92563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.03 9.34 71.98 0.67 -4.36 16 2 C 0.18 6.91 2.40 44.99 0.11 7.02 16 3 H 0.05 1.85 8.05 -2.39 -0.02 1.83 16 4 N -0.74 -37.87 4.82 -322.94 -1.56 -39.43 16 5 C -0.23 -13.02 9.93 84.04 0.83 -12.18 16 6 H 0.08 4.18 7.83 -2.91 -0.02 4.16 16 7 C -0.08 -4.90 5.50 84.86 0.47 -4.43 16 8 N -0.97 -62.35 13.06 21.65 0.28 -62.06 16 9 Si 0.97 48.08 29.55 68.60 2.03 50.10 16 10 H -0.29 -14.43 7.11 99.48 0.71 -13.72 16 11 H -0.30 -14.92 7.11 99.48 0.71 -14.22 16 12 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 13 C -0.09 -2.99 2.62 -9.40 -0.02 -3.01 16 14 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 15 C -0.11 -2.55 5.59 31.78 0.18 -2.37 16 16 C 0.12 2.98 5.55 86.70 0.48 3.46 16 17 N -0.61 -21.21 3.33 -814.91 -2.72 -23.93 16 18 C 0.60 23.19 7.86 86.75 0.68 23.87 16 19 O -0.59 -27.56 17.18 -3.92 -0.07 -27.62 16 20 C -0.04 -1.29 6.98 42.46 0.30 -0.99 16 21 C -0.20 -5.06 10.81 22.41 0.24 -4.82 16 22 C 0.00 0.05 10.39 83.54 0.87 0.91 16 23 N -0.27 -4.51 3.14 -323.94 -1.02 -5.53 16 24 C 0.13 1.22 3.88 45.71 0.18 1.40 16 25 C -0.13 -0.55 6.35 31.67 0.20 -0.35 16 26 C -0.11 -0.19 6.91 31.89 0.22 0.03 16 27 C -0.12 -0.46 6.83 31.67 0.22 -0.24 16 28 C -0.13 -1.04 6.60 31.32 0.21 -0.83 16 29 N -0.26 -6.27 9.52 -48.17 -0.46 -6.73 16 30 C 0.13 4.95 6.08 86.85 0.53 5.47 16 31 H 0.03 1.31 8.14 -2.38 -0.02 1.29 16 32 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.08 1.99 7.50 -2.39 -0.02 1.97 16 34 H 0.37 20.87 7.80 -92.71 -0.72 20.15 16 35 H 0.25 15.52 8.31 -92.71 -0.77 14.75 16 36 H 0.09 1.88 8.01 -2.39 -0.02 1.86 16 37 H 0.11 1.93 8.13 -2.39 -0.02 1.91 16 38 H 0.08 1.85 7.76 -2.39 -0.02 1.83 16 39 H 0.08 1.84 7.68 -2.39 -0.02 1.83 16 40 H 0.16 3.87 8.06 -2.91 -0.02 3.85 16 41 H 0.22 1.49 6.80 -2.91 -0.02 1.47 16 42 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.09 0.30 5.83 -2.39 -0.01 0.29 16 44 H 0.09 0.30 8.14 -2.38 -0.02 0.28 16 45 H 0.08 0.05 8.14 -2.39 -0.02 0.03 16 46 H 0.09 0.01 8.14 -2.39 -0.02 -0.01 16 47 H 0.08 0.21 8.14 -2.38 -0.02 0.20 16 48 H 0.07 0.29 8.14 -2.39 -0.02 0.27 16 49 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 50 H 0.06 0.70 7.92 -2.39 -0.02 0.68 16 51 H 0.04 1.98 8.04 -2.39 -0.02 1.96 16 52 H 0.06 2.36 8.03 -2.39 -0.02 2.34 16 Total: -1.00 -80.73 412.69 3.03 -77.70 By element: Atomic # 1 Polarization: 28.74 SS G_CDS: 0.18 Total: 28.92 kcal Atomic # 6 Polarization: 2.23 SS G_CDS: 6.35 Total: 8.58 kcal Atomic # 7 Polarization: -132.22 SS G_CDS: -5.46 Total: -137.68 kcal Atomic # 8 Polarization: -27.56 SS G_CDS: -0.07 Total: -27.62 kcal Atomic # 14 Polarization: 48.08 SS G_CDS: 2.03 Total: 50.10 kcal Total: -80.73 3.03 -77.70 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325409233.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.500 kcal (2) G-P(sol) polarization free energy of solvation -80.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds