Wall clock time and date at job start Wed Apr 1 2020 04:34:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.47176 * 2 1 4 4 C 1.53002 * 109.46746 * 240.00434 * 2 1 3 5 5 C 1.50697 * 109.47509 * 64.99897 * 4 2 1 6 6 C 1.34666 * 126.59145 * 274.68828 * 5 4 2 7 7 N 1.34123 * 108.02249 * 179.87140 * 6 5 4 8 8 C 1.30493 * 109.25579 * 0.39824 * 7 6 5 9 9 N 1.35038 * 108.70069 * 359.75593 * 8 7 6 10 10 H 0.97003 * 126.40329 * 180.02562 * 9 8 7 11 11 C 1.50693 * 109.47698 * 120.00105 * 2 1 3 12 12 O 1.21288 * 120.00110 * 119.99375 * 11 2 1 13 13 N 1.34777 * 120.00112 * 300.00212 * 11 2 1 14 14 C 1.46500 * 120.00072 * 179.97438 * 13 11 2 15 15 C 1.52999 * 109.46900 * 179.97438 * 14 13 11 16 16 H 1.09008 * 109.40121 * 59.80858 * 15 14 13 17 17 C 1.53153 * 109.43487 * 179.69415 * 15 14 13 18 18 C 1.54245 * 108.84149 * 66.08408 * 17 15 14 19 19 H 1.09003 * 112.33394 * 187.68952 * 18 17 15 20 20 C 1.54612 * 107.85985 * 312.47604 * 18 17 15 21 21 C 1.53793 * 104.84767 * 88.46883 * 20 18 17 22 22 C 1.54605 * 104.85403 * 0.02562 * 21 20 18 23 23 H 1.09000 * 112.69780 * 146.96041 * 22 21 20 24 24 C 1.53140 * 109.43617 * 299.91976 * 15 14 13 25 25 N 1.48290 * 106.99158 * 64.13340 * 18 17 15 26 26 C 1.36935 * 128.21074 * 107.52883 * 25 18 17 27 27 H 1.07998 * 120.00212 * 154.74284 * 26 25 18 28 28 C 1.38809 * 120.00049 * 334.73788 * 26 25 18 29 29 N 1.31625 * 120.00079 * 354.98212 * 28 26 25 30 30 Si 1.86799 * 120.00272 * 174.97930 * 28 26 25 31 31 H 1.48498 * 109.47293 * 180.02562 * 30 28 26 32 32 H 1.48499 * 109.47258 * 300.00161 * 30 28 26 33 33 H 1.48496 * 109.47059 * 60.00221 * 30 28 26 34 34 H 1.08995 * 109.47158 * 180.02562 * 1 2 3 35 35 H 1.09006 * 109.47104 * 299.99797 * 1 2 3 36 36 H 1.09001 * 109.47395 * 59.99507 * 1 2 3 37 37 H 1.09005 * 109.46845 * 184.99759 * 4 2 1 38 38 H 1.09000 * 109.47461 * 304.99577 * 4 2 1 39 39 H 1.08002 * 125.98710 * 0.02562 * 6 5 4 40 40 H 1.08007 * 125.65098 * 179.77127 * 8 7 6 41 41 H 0.96996 * 119.99758 * 359.97438 * 13 11 2 42 42 H 1.08991 * 109.47386 * 59.99751 * 14 13 11 43 43 H 1.09004 * 109.47065 * 299.99629 * 14 13 11 44 44 H 1.09004 * 109.57097 * 185.99514 * 17 15 14 45 45 H 1.09007 * 109.56777 * 306.23684 * 17 15 14 46 46 H 1.08997 * 110.38536 * 207.17397 * 20 18 17 47 47 H 1.09000 * 110.38032 * 329.54206 * 20 18 17 48 48 H 1.09001 * 110.43537 * 241.09801 * 21 20 18 49 49 H 1.09003 * 110.24096 * 118.80256 * 21 20 18 50 50 H 1.09005 * 109.57260 * 174.00759 * 24 15 14 51 51 H 1.08999 * 109.57368 * 53.64110 * 24 15 14 52 52 H 0.96998 * 120.00242 * 179.97438 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6412 0.0571 -2.4766 6 6 0.4685 -0.0251 -3.1335 7 7 0.5104 0.8299 -4.1661 8 6 1.6677 1.4326 -4.1790 9 7 2.4036 0.9793 -3.1415 10 1 3.3042 1.2557 -2.9102 11 6 2.0324 -0.7104 1.2303 12 8 2.7297 -1.6965 1.1190 13 7 1.7069 -0.2500 2.4545 14 6 2.1949 -0.9409 3.6506 15 6 1.6855 -0.2193 4.8999 16 1 0.5954 -0.2162 4.8971 17 6 2.1898 -0.9466 6.1498 18 6 3.7250 -0.8134 6.2183 19 1 4.1586 -1.4222 7.0117 20 6 4.2937 -1.1593 4.8227 21 6 4.2956 0.1741 4.0564 22 6 3.7286 1.2072 5.0572 23 1 4.1646 2.1982 4.9310 24 6 2.1991 1.2234 4.9000 25 7 4.0277 0.6282 6.3890 26 6 4.4820 1.2713 7.5093 27 1 5.0364 2.1933 7.4152 28 6 4.2298 0.7384 8.7659 29 7 3.4710 -0.3303 8.8874 30 14 4.9673 1.5376 10.2847 31 1 4.5504 0.7824 11.4934 32 1 6.4486 1.5255 10.1806 33 1 4.4898 2.9399 10.3875 34 1 -0.3633 -1.0276 0.0005 35 1 -0.3634 0.5138 0.8901 36 1 -0.3634 0.5139 -0.8899 37 1 3.1262 -0.7994 -1.2057 38 1 1.6053 -1.7198 -1.2953 39 1 -0.3614 -0.6654 -2.8729 40 1 1.9844 2.1719 -4.9000 41 1 1.1495 0.5388 2.5435 42 1 3.2848 -0.9413 3.6507 43 1 1.8311 -1.9685 3.6505 44 1 1.7429 -0.4995 7.0377 45 1 1.9161 -2.0003 6.0944 46 1 5.3094 -1.5446 4.9115 47 1 3.6537 -1.8853 4.3213 48 1 3.6568 0.1079 3.1758 49 1 5.3123 0.4427 3.7695 50 1 1.7526 1.7699 5.7307 51 1 1.9339 1.7055 3.9590 52 1 3.2950 -0.7029 9.7655 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325629153.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:08 Heat of formation + Delta-G solvation = 109.275823 kcal Electronic energy + Delta-G solvation = -31765.207484 eV Core-core repulsion = 27768.817922 eV Total energy + Delta-G solvation = -3996.389563 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.95897 -42.69562 -40.39997 -36.27705 -35.87783 -34.48947 -33.35443 -32.94770 -32.29764 -31.45623 -30.59842 -28.20196 -27.50127 -25.61422 -24.82781 -24.06581 -22.38045 -22.12096 -21.73229 -21.27111 -20.75767 -20.30527 -18.83283 -18.60360 -18.00328 -17.43781 -16.86687 -16.51483 -16.21088 -15.87504 -15.60241 -15.09649 -15.08934 -14.58092 -14.52204 -14.42340 -14.31505 -14.11963 -13.86300 -13.59018 -13.45473 -13.28320 -13.12146 -13.07238 -12.98478 -12.79452 -12.65351 -12.50838 -12.27828 -12.19378 -12.05409 -11.98589 -11.48004 -11.25219 -10.99188 -10.94935 -10.88240 -10.87376 -10.74714 -10.62679 -10.42971 -9.43294 -9.24629 -8.59384 -7.84649 -5.23051 1.14901 1.47031 1.48148 1.54272 1.75623 2.20767 2.29246 2.47178 2.51259 3.33987 3.62677 3.67622 3.88571 3.95317 3.97632 3.98661 4.03030 4.08892 4.26991 4.29650 4.32110 4.40313 4.44404 4.48165 4.57836 4.64236 4.68214 4.75200 4.80183 4.82814 4.88106 4.93200 4.96008 5.04325 5.06723 5.12907 5.16660 5.22052 5.31033 5.34615 5.41988 5.42426 5.52765 5.57287 5.62368 5.64675 5.78624 5.84067 5.94629 6.32572 6.61925 6.69428 7.12336 7.19341 7.37562 7.77535 8.63442 9.27604 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.027832 B = 0.002211 C = 0.002172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.805013 B =12658.260504 C =12888.273478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.094 4.094 3 H 0.112 0.888 4 C -0.019 4.019 5 C -0.015 4.015 6 C -0.042 4.042 7 N -0.539 5.539 8 C 0.187 3.813 9 N -0.558 5.558 10 H 0.433 0.567 11 C 0.512 3.488 12 O -0.582 6.582 13 N -0.711 5.711 14 C 0.015 3.985 15 C -0.074 4.074 16 H 0.066 0.934 17 C -0.103 4.103 18 C 0.181 3.819 19 H 0.050 0.950 20 C -0.163 4.163 21 C -0.147 4.147 22 C 0.141 3.859 23 H 0.065 0.935 24 C -0.113 4.113 25 N -0.604 5.604 26 C -0.240 4.240 27 H 0.067 0.933 28 C -0.050 4.050 29 N -0.928 5.928 30 Si 0.967 3.033 31 H -0.297 1.297 32 H -0.282 1.282 33 H -0.278 1.278 34 H 0.058 0.942 35 H 0.069 0.931 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.086 0.914 39 H 0.170 0.830 40 H 0.241 0.759 41 H 0.407 0.593 42 H 0.183 0.817 43 H 0.043 0.957 44 H 0.044 0.956 45 H 0.044 0.956 46 H 0.049 0.951 47 H 0.106 0.894 48 H 0.118 0.882 49 H 0.054 0.946 50 H 0.036 0.964 51 H 0.081 0.919 52 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.435 3.379 -22.933 23.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.116 4.116 3 H 0.130 0.870 4 C -0.058 4.058 5 C -0.132 4.132 6 C -0.189 4.189 7 N -0.259 5.259 8 C -0.097 4.097 9 N -0.163 5.163 10 H 0.274 0.726 11 C 0.300 3.700 12 O -0.462 6.462 13 N -0.363 5.363 14 C -0.105 4.105 15 C -0.093 4.093 16 H 0.084 0.916 17 C -0.143 4.143 18 C 0.074 3.926 19 H 0.068 0.932 20 C -0.201 4.201 21 C -0.185 4.185 22 C 0.035 3.965 23 H 0.083 0.917 24 C -0.153 4.153 25 N -0.326 5.326 26 C -0.369 4.369 27 H 0.085 0.915 28 C -0.245 4.245 29 N -0.574 5.574 30 Si 0.796 3.204 31 H -0.223 1.223 32 H -0.209 1.209 33 H -0.205 1.205 34 H 0.077 0.923 35 H 0.088 0.912 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.105 0.895 39 H 0.188 0.812 40 H 0.257 0.743 41 H 0.243 0.757 42 H 0.199 0.801 43 H 0.061 0.939 44 H 0.063 0.937 45 H 0.063 0.937 46 H 0.067 0.933 47 H 0.123 0.877 48 H 0.136 0.864 49 H 0.072 0.928 50 H 0.055 0.945 51 H 0.100 0.900 52 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -4.619 2.802 -23.283 23.902 hybrid contribution 0.903 0.440 2.340 2.546 sum -3.715 3.241 -20.944 21.516 Atomic orbital electron populations 1.21850 0.91623 1.02979 1.03674 1.21220 0.98680 1.00915 0.90763 0.87008 1.19733 1.01786 0.97309 0.87012 1.21168 0.94007 0.98581 0.99403 1.22289 0.98464 1.02918 0.95268 1.70268 1.21396 1.11512 1.22683 1.25638 0.87955 1.02397 0.93731 1.43326 1.17218 1.32233 1.23479 0.72610 1.21005 0.79583 0.84182 0.85279 1.90695 1.39943 1.28153 1.87387 1.46217 1.52930 1.31797 1.05330 1.24793 1.08401 0.94354 0.82976 1.21112 0.99092 0.95427 0.93695 0.91571 1.21941 0.98062 0.97777 0.96497 1.21313 0.92669 0.85955 0.92671 0.93152 1.23364 1.00908 0.97963 0.97878 1.23236 1.01267 0.94740 0.99292 1.21787 0.93548 0.95530 0.85671 0.91701 1.22061 0.97199 0.95573 1.00430 1.45244 1.76408 1.03475 1.07513 1.19131 1.27042 1.06569 0.84184 0.91488 1.25711 0.99531 0.99399 0.99874 1.70060 1.40774 1.24300 1.22295 0.85351 0.77965 0.77829 0.79265 1.22287 1.20855 1.20455 0.92276 0.91159 0.90485 0.90487 0.89517 0.81226 0.74343 0.75666 0.80149 0.93910 0.93702 0.93724 0.93259 0.87673 0.86440 0.92758 0.94494 0.90040 0.94484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 8.77 71.98 0.63 -1.17 16 2 C -0.09 -1.36 2.71 -11.54 -0.03 -1.39 16 3 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 4 C -0.02 -0.29 4.59 29.85 0.14 -0.15 16 5 C -0.02 -0.22 6.08 40.95 0.25 0.03 16 6 C -0.04 -0.75 10.12 83.52 0.84 0.09 16 7 N -0.54 -10.59 11.25 -200.32 -2.25 -12.85 16 8 C 0.19 2.28 13.04 180.27 2.35 4.63 16 9 N -0.56 -5.80 6.15 -186.50 -1.15 -6.95 16 10 H 0.43 1.96 8.96 -92.71 -0.83 1.13 16 11 C 0.51 11.17 6.91 87.65 0.61 11.78 16 12 O -0.58 -17.36 15.92 -3.05 -0.05 -17.41 16 13 N -0.71 -15.03 4.28 -463.07 -1.98 -17.01 16 14 C 0.01 0.41 2.68 86.38 0.23 0.64 16 15 C -0.07 -2.36 2.76 -10.70 -0.03 -2.39 16 16 H 0.07 1.93 8.14 -2.38 -0.02 1.91 16 17 C -0.10 -4.24 5.21 31.07 0.16 -4.08 16 18 C 0.18 8.17 3.13 45.62 0.14 8.32 16 19 H 0.05 2.70 6.91 -2.39 -0.02 2.69 16 20 C -0.16 -5.94 5.70 31.41 0.18 -5.76 16 21 C -0.15 -4.78 5.70 31.41 0.18 -4.60 16 22 C 0.14 5.29 4.33 45.45 0.20 5.49 16 23 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 24 C -0.11 -3.65 5.28 30.90 0.16 -3.49 16 25 N -0.60 -29.00 2.78 -636.15 -1.77 -30.77 16 26 C -0.24 -12.95 10.34 84.03 0.87 -12.08 16 27 H 0.07 3.54 7.83 -2.91 -0.02 3.52 16 28 C -0.05 -2.73 5.43 84.86 0.46 -2.27 16 29 N -0.93 -53.23 10.33 21.65 0.22 -53.00 16 30 Si 0.97 44.75 29.56 68.60 2.03 46.78 16 31 H -0.30 -13.89 7.11 99.48 0.71 -13.18 16 32 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 33 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 34 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.07 0.76 7.57 -2.38 -0.02 0.74 16 36 H 0.08 0.95 6.20 -2.39 -0.01 0.94 16 37 H 0.08 1.23 7.96 -2.38 -0.02 1.21 16 38 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.17 2.69 8.03 -2.91 -0.02 2.66 16 40 H 0.24 0.88 8.06 -2.91 -0.02 0.86 16 41 H 0.41 6.67 6.74 -92.71 -0.62 6.05 16 42 H 0.18 5.49 1.11 -109.69 -0.12 5.37 16 43 H 0.04 1.29 8.00 -2.39 -0.02 1.27 16 44 H 0.04 2.21 7.39 -2.38 -0.02 2.19 16 45 H 0.04 1.73 8.14 -2.38 -0.02 1.71 16 46 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 47 H 0.11 3.50 4.85 -2.39 -0.01 3.49 16 48 H 0.12 3.28 3.95 -2.39 -0.01 3.27 16 49 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 50 H 0.04 1.40 8.14 -2.38 -0.02 1.38 16 51 H 0.08 1.94 6.72 -2.39 -0.02 1.93 16 52 H 0.25 13.92 8.31 -92.71 -0.77 13.15 16 Total: -1.00 -71.65 386.24 1.78 -69.87 By element: Atomic # 1 Polarization: 28.36 SS G_CDS: -0.61 Total: 27.75 kcal Atomic # 6 Polarization: -13.74 SS G_CDS: 7.34 Total: -6.40 kcal Atomic # 7 Polarization: -113.65 SS G_CDS: -6.93 Total: -120.58 kcal Atomic # 8 Polarization: -17.36 SS G_CDS: -0.05 Total: -17.41 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -71.65 1.78 -69.87 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325629153.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.141 kcal (2) G-P(sol) polarization free energy of solvation -71.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds