Wall clock time and date at job start Wed Apr 1 2020 05:43:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 C 1.52993 * 109.47265 * 352.98409 * 3 2 1 5 5 C 1.53005 * 109.47309 * 179.97438 * 4 3 2 6 6 C 1.50694 * 109.47321 * 180.02562 * 5 4 3 7 7 N 1.30299 * 126.34746 * 269.95883 * 6 5 4 8 8 N 1.28530 * 110.05415 * 180.02562 * 7 6 5 9 9 C 1.31211 * 109.85824 * 359.74781 * 8 7 6 10 10 N 1.38582 * 126.47032 * 180.26245 * 9 8 7 11 11 C 1.46897 * 111.00552 * 61.55758 * 10 9 8 12 12 C 1.46902 * 110.99723 * 297.60414 * 10 9 8 13 13 H 1.08998 * 109.47332 * 310.00346 * 12 10 9 14 14 C 1.53002 * 109.47133 * 70.00314 * 12 10 9 15 15 C 1.50702 * 109.47237 * 190.00386 * 12 10 9 16 16 H 1.08006 * 119.99831 * 359.97438 * 15 12 10 17 17 C 1.37874 * 120.00198 * 180.02562 * 15 12 10 18 18 N 1.31519 * 119.99759 * 359.97438 * 17 15 12 19 19 Si 1.86803 * 120.00079 * 180.02562 * 17 15 12 20 20 H 1.48493 * 109.47296 * 59.99783 * 19 17 15 21 21 H 1.48497 * 109.46926 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.46739 * 299.99447 * 19 17 15 23 23 N 1.36452 * 107.05503 * 0.39544 * 9 8 7 24 24 C 1.46500 * 127.13519 * 179.87672 * 23 9 8 25 25 C 1.53000 * 109.47285 * 264.18506 * 24 23 9 26 26 H 1.08997 * 110.45818 * 307.60890 * 25 24 23 27 27 C 1.54511 * 110.51436 * 185.00012 * 25 24 23 28 28 C 1.54480 * 104.06221 * 241.22032 * 27 25 24 29 29 O 1.44423 * 104.80226 * 336.01713 * 28 27 25 30 30 C 1.44427 * 105.27512 * 40.51523 * 29 28 27 31 31 H 4.44644 * 5.63380 * 179.97438 * 4 1 2 32 32 H 1.08996 * 109.46560 * 232.98385 * 3 2 1 33 33 H 1.09007 * 109.46736 * 112.98399 * 3 2 1 34 34 H 1.09008 * 109.47403 * 60.00034 * 4 3 2 35 35 H 1.09003 * 109.47196 * 300.00174 * 4 3 2 36 36 H 1.08996 * 109.46500 * 59.99985 * 5 4 3 37 37 H 1.09003 * 109.46444 * 300.00396 * 5 4 3 38 38 H 1.09008 * 109.47034 * 66.25983 * 11 10 9 39 39 H 1.08996 * 109.47158 * 186.25817 * 11 10 9 40 40 H 1.08996 * 109.47033 * 306.26324 * 11 10 9 41 41 H 1.08998 * 109.46985 * 59.99820 * 14 12 10 42 42 H 1.08998 * 109.46871 * 180.02562 * 14 12 10 43 43 H 1.09003 * 109.46868 * 300.00068 * 14 12 10 44 44 H 0.97002 * 119.99453 * 180.02562 * 18 17 15 45 45 H 1.09000 * 109.47424 * 144.18518 * 24 23 9 46 46 H 1.09002 * 109.47011 * 24.18348 * 24 23 9 47 47 H 1.09001 * 110.51034 * 122.57242 * 27 25 24 48 48 H 1.09000 * 110.62245 * 359.91945 * 27 25 24 49 49 H 1.08996 * 110.37448 * 94.85136 * 28 27 25 50 50 H 1.08997 * 110.36734 * 217.19175 * 28 27 25 51 51 H 1.09005 * 110.37230 * 200.65424 * 30 29 28 52 52 H 1.09006 * 110.46228 * 78.36742 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1567 -1.4307 0.1762 5 6 4.6867 -1.4301 0.1755 6 6 5.1897 -2.8401 0.3485 7 7 5.4486 -3.4345 1.4787 8 7 5.8605 -4.6327 1.2623 9 6 5.8816 -4.8706 -0.0279 10 7 6.2633 -6.0531 -0.6413 11 6 5.3904 -7.1626 -0.2352 12 6 7.6718 -6.3613 -0.3599 13 1 8.2845 -5.4846 -0.5697 14 6 7.8246 -6.7500 1.1120 15 6 8.1191 -7.5069 -1.2310 16 1 7.4262 -7.9608 -1.9241 17 6 9.4125 -7.9760 -1.1425 18 7 10.2561 -7.4235 -0.2983 19 14 9.9672 -9.3955 -2.2228 20 1 9.8196 -9.0175 -3.6512 21 1 11.3909 -9.7071 -1.9383 22 1 9.1321 -10.5899 -1.9380 23 7 5.4596 -3.7327 -0.6516 24 6 5.3189 -3.5146 -2.0934 25 6 6.5788 -2.8334 -2.6316 26 1 6.8063 -1.9397 -2.0506 27 6 6.4065 -2.4787 -4.1255 28 6 7.5195 -3.2831 -4.8331 29 8 8.5183 -3.5060 -3.8140 30 6 7.7755 -3.8100 -2.6133 31 1 -1.0498 -0.0005 0.0003 32 1 3.0090 0.6195 0.8206 33 1 3.0091 0.4021 -0.9462 34 1 2.7936 -2.0497 -0.6444 35 1 2.7935 -1.8322 1.1223 36 1 5.0500 -0.8112 0.9959 37 1 5.0494 -1.0288 -0.7708 38 1 4.3833 -6.9905 -0.6153 39 1 5.7773 -8.0970 -0.6417 40 1 5.3626 -7.2235 0.8527 41 1 7.2119 -7.6267 1.3217 42 1 8.8698 -6.9782 1.3208 43 1 7.5011 -5.9214 1.7420 44 1 11.1662 -7.7534 -0.2363 45 1 4.4536 -2.8792 -2.2821 46 1 5.1820 -4.4730 -2.5942 47 1 6.5488 -1.4096 -4.2831 48 1 5.4247 -2.7892 -4.4830 49 1 7.1286 -4.2337 -5.1957 50 1 7.9398 -2.7057 -5.6565 51 1 8.3927 -3.6375 -1.7314 52 1 7.4239 -4.8416 -2.6335 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001335454713.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:43:55 Heat of formation + Delta-G solvation = 91.207473 kcal Electronic energy + Delta-G solvation = -32207.756803 eV Core-core repulsion = 28210.583738 eV Total energy + Delta-G solvation = -3997.173065 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.60085 -39.28029 -37.34944 -36.27856 -35.20573 -33.13679 -32.67011 -31.95659 -29.87811 -29.28316 -28.56691 -27.04915 -26.15435 -25.23392 -25.03355 -22.96718 -22.51506 -21.54989 -20.78404 -20.08056 -19.49548 -18.35149 -16.99519 -16.42683 -16.10176 -15.99125 -15.64940 -15.46353 -15.17855 -14.83908 -14.77921 -14.63600 -14.15430 -13.80904 -13.62133 -13.11789 -12.94118 -12.89598 -12.76871 -12.49164 -12.26290 -11.99709 -11.89506 -11.49713 -11.41479 -11.31572 -11.23340 -11.09691 -10.97944 -10.91403 -10.77801 -10.66765 -10.53157 -10.44932 -10.35421 -10.18792 -10.11327 -9.88745 -9.67444 -9.50715 -8.89198 -8.45877 -8.41869 -7.78070 -6.05456 -4.12020 2.10457 2.53418 2.59019 2.64745 3.29928 3.30372 3.35616 3.37188 4.07088 4.10457 4.30952 4.36821 4.43455 4.54995 4.66800 4.71046 4.81283 4.92005 4.95909 5.06614 5.15243 5.18861 5.26462 5.28417 5.32438 5.36771 5.48751 5.54599 5.67424 5.71745 5.74041 5.76338 5.79095 5.90343 5.97384 5.98816 6.15578 6.19958 6.31284 6.40532 6.44226 6.58473 6.81745 6.99865 7.01958 7.08252 7.21156 7.36565 7.50577 7.63802 7.75951 7.93368 8.26757 8.45523 8.90539 9.23320 9.53110 11.00971 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012302 B = 0.003458 C = 0.002938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2275.537521 B = 8094.554395 C = 9528.799492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.184 4.184 3 C -0.012 4.012 4 C -0.109 4.109 5 C -0.025 4.025 6 C 0.158 3.842 7 N -0.290 5.290 8 N -0.312 5.312 9 C 0.377 3.623 10 N -0.471 5.471 11 C 0.045 3.955 12 C 0.227 3.773 13 H 0.039 0.961 14 C -0.178 4.178 15 C -0.509 4.509 16 H 0.063 0.937 17 C 0.065 3.935 18 N -0.886 5.886 19 Si 0.898 3.102 20 H -0.276 1.276 21 H -0.288 1.288 22 H -0.277 1.277 23 N -0.469 5.469 24 C 0.124 3.876 25 C -0.139 4.139 26 H 0.084 0.916 27 C -0.144 4.144 28 C 0.044 3.956 29 O -0.371 6.371 30 C 0.052 3.948 31 H 0.215 0.785 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.065 0.935 35 H 0.076 0.924 36 H 0.099 0.901 37 H 0.080 0.920 38 H 0.043 0.957 39 H 0.090 0.910 40 H 0.039 0.961 41 H 0.029 0.971 42 H 0.086 0.914 43 H 0.039 0.961 44 H 0.263 0.737 45 H 0.088 0.912 46 H 0.106 0.894 47 H 0.077 0.923 48 H 0.078 0.922 49 H 0.061 0.939 50 H 0.087 0.913 51 H 0.086 0.914 52 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.150 14.001 -6.287 20.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.184 4.184 3 C -0.049 4.049 4 C -0.147 4.147 5 C -0.065 4.065 6 C -0.109 4.109 7 N -0.131 5.131 8 N -0.155 5.155 9 C 0.021 3.979 10 N -0.198 5.198 11 C -0.103 4.103 12 C 0.123 3.877 13 H 0.057 0.943 14 C -0.237 4.237 15 C -0.547 4.547 16 H 0.081 0.919 17 C -0.137 4.137 18 N -0.524 5.524 19 Si 0.726 3.274 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.203 1.203 23 N -0.162 5.162 24 C 0.000 4.000 25 C -0.159 4.159 26 H 0.102 0.898 27 C -0.183 4.183 28 C -0.034 4.034 29 O -0.290 6.290 30 C -0.025 4.025 31 H 0.232 0.768 32 H 0.109 0.891 33 H 0.106 0.894 34 H 0.084 0.916 35 H 0.095 0.905 36 H 0.117 0.883 37 H 0.099 0.901 38 H 0.062 0.938 39 H 0.109 0.891 40 H 0.057 0.943 41 H 0.049 0.951 42 H 0.104 0.896 43 H 0.058 0.942 44 H 0.073 0.927 45 H 0.107 0.893 46 H 0.125 0.875 47 H 0.095 0.905 48 H 0.097 0.903 49 H 0.079 0.921 50 H 0.105 0.895 51 H 0.105 0.895 52 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -13.588 13.806 -5.272 20.075 hybrid contribution -0.062 -0.714 -1.139 1.346 sum -13.650 13.092 -6.411 19.971 Atomic orbital electron populations 1.24907 0.96013 1.00766 1.01406 1.23132 0.94593 1.00456 1.00221 1.18747 0.84743 0.97885 1.03509 1.21520 0.93940 0.95652 1.03629 1.19928 0.94927 0.87682 1.03983 1.24432 1.06251 0.95505 0.84744 1.73967 1.15251 1.01944 1.21924 1.74768 1.19428 1.08706 1.12562 1.22954 0.98590 0.89336 0.87011 1.59451 1.07928 0.97674 1.54716 1.22251 0.94376 0.94191 0.99484 1.19414 0.78114 0.97021 0.93176 0.94312 1.22499 1.03930 0.99096 0.98155 1.20912 0.96444 1.16007 1.21373 0.91856 1.24877 0.96480 0.96933 0.95455 1.69894 1.05453 1.41438 1.35627 0.86559 0.77591 0.82389 0.80865 1.20191 1.21333 1.20289 1.46368 1.50157 1.11790 1.07925 1.21881 0.97704 1.03194 0.77218 1.22965 0.96101 0.99989 0.96801 0.89800 1.22919 1.00261 1.01376 0.93721 1.23365 0.88966 0.98864 0.92170 1.89166 1.29252 1.91057 1.19492 1.23707 0.91400 0.99220 0.88150 0.76766 0.89085 0.89402 0.91644 0.90522 0.88270 0.90107 0.93837 0.89143 0.94257 0.95144 0.89585 0.94215 0.92732 0.89325 0.87535 0.90455 0.90295 0.92090 0.89482 0.89522 0.88847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.82 19.25 29.55 0.57 -1.25 16 2 C -0.18 -1.69 13.34 -37.12 -0.50 -2.19 16 3 C -0.01 -0.09 5.70 -29.52 -0.17 -0.26 16 4 C -0.11 -0.96 5.15 -26.73 -0.14 -1.10 16 5 C -0.03 -0.25 5.53 -27.88 -0.15 -0.40 16 6 C 0.16 2.40 7.32 -154.02 -1.13 1.27 16 7 N -0.29 -5.61 12.18 32.99 0.40 -5.21 16 8 N -0.31 -6.71 9.75 30.31 0.30 -6.42 16 9 C 0.38 7.40 6.18 -318.88 -1.97 5.43 16 10 N -0.47 -9.67 4.15 -176.08 -0.73 -10.40 16 11 C 0.04 0.85 8.52 60.06 0.51 1.36 16 12 C 0.23 5.50 1.71 -68.86 -0.12 5.38 16 13 H 0.04 1.05 6.66 -51.93 -0.35 0.70 16 14 C -0.18 -4.45 8.18 37.16 0.30 -4.15 16 15 C -0.51 -13.12 7.82 -34.44 -0.27 -13.39 16 16 H 0.06 1.60 7.18 -52.48 -0.38 1.22 16 17 C 0.07 1.74 5.30 -17.82 -0.09 1.64 16 18 N -0.89 -24.86 11.32 55.43 0.63 -24.23 16 19 Si 0.90 20.83 29.54 -169.99 -5.02 15.81 16 20 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 21 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 23 N -0.47 -7.34 2.70 -114.09 -0.31 -7.65 16 24 C 0.12 1.48 5.01 -4.04 -0.02 1.46 16 25 C -0.14 -1.70 3.34 -89.05 -0.30 -1.99 16 26 H 0.08 1.00 7.98 -51.93 -0.41 0.59 16 27 C -0.14 -1.37 6.73 -25.16 -0.17 -1.54 16 28 C 0.04 0.52 7.63 37.93 0.29 0.81 16 29 O -0.37 -6.39 11.65 -35.23 -0.41 -6.80 16 30 C 0.05 0.88 6.33 37.93 0.24 1.12 16 31 H 0.22 1.13 7.80 -54.10 -0.42 0.71 16 32 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.09 0.48 8.14 -51.92 -0.42 0.06 16 34 H 0.06 0.60 8.14 -51.92 -0.42 0.18 16 35 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.08 0.62 7.81 -51.93 -0.41 0.22 16 38 H 0.04 0.72 8.14 -51.92 -0.42 0.30 16 39 H 0.09 1.77 6.64 -51.93 -0.34 1.42 16 40 H 0.04 0.79 6.69 -51.93 -0.35 0.44 16 41 H 0.03 0.73 6.56 -51.93 -0.34 0.39 16 42 H 0.09 2.37 6.07 -51.93 -0.32 2.05 16 43 H 0.04 0.99 5.86 -51.93 -0.30 0.68 16 44 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 45 H 0.09 0.78 8.07 -51.93 -0.42 0.36 16 46 H 0.11 1.35 7.93 -51.93 -0.41 0.94 16 47 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 48 H 0.08 0.59 7.74 -51.93 -0.40 0.18 16 49 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 50 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 51 H 0.09 1.71 7.54 -51.93 -0.39 1.32 16 52 H 0.09 1.81 6.52 -51.93 -0.34 1.47 16 LS Contribution 414.29 15.07 6.24 6.24 Total: -1.00 -32.17 414.29 -10.53 -42.70 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -8.52 Total: 3.73 kcal Atomic # 6 Polarization: -4.67 SS G_CDS: -3.11 Total: -7.78 kcal Atomic # 7 Polarization: -54.19 SS G_CDS: 0.29 Total: -53.91 kcal Atomic # 8 Polarization: -6.39 SS G_CDS: -0.41 Total: -6.80 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -32.17 -10.53 -42.70 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335454713.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.904 kcal (2) G-P(sol) polarization free energy of solvation -32.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds