Wall clock time and date at job start Wed Apr 1 2020 05:43:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 C 1.52993 * 109.47265 * 352.98409 * 3 2 1 5 5 C 1.53005 * 109.47309 * 179.97438 * 4 3 2 6 6 C 1.50694 * 109.47321 * 180.02562 * 5 4 3 7 7 N 1.30299 * 126.34746 * 269.95883 * 6 5 4 8 8 N 1.28530 * 110.05415 * 180.02562 * 7 6 5 9 9 C 1.31211 * 109.85824 * 359.74781 * 8 7 6 10 10 N 1.38582 * 126.47032 * 180.26245 * 9 8 7 11 11 C 1.46897 * 111.00552 * 61.55758 * 10 9 8 12 12 C 1.46902 * 110.99723 * 297.60414 * 10 9 8 13 13 H 1.08998 * 109.47332 * 310.00346 * 12 10 9 14 14 C 1.53002 * 109.47133 * 70.00314 * 12 10 9 15 15 C 1.50702 * 109.47237 * 190.00386 * 12 10 9 16 16 H 1.08006 * 119.99831 * 359.97438 * 15 12 10 17 17 C 1.37874 * 120.00198 * 180.02562 * 15 12 10 18 18 N 1.31519 * 119.99759 * 359.97438 * 17 15 12 19 19 Si 1.86803 * 120.00079 * 180.02562 * 17 15 12 20 20 H 1.48493 * 109.47296 * 59.99783 * 19 17 15 21 21 H 1.48497 * 109.46926 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.46739 * 299.99447 * 19 17 15 23 23 N 1.36452 * 107.05503 * 0.39544 * 9 8 7 24 24 C 1.46500 * 127.13519 * 179.87672 * 23 9 8 25 25 C 1.53000 * 109.47285 * 264.18506 * 24 23 9 26 26 H 1.08997 * 110.45818 * 307.60890 * 25 24 23 27 27 C 1.54511 * 110.51436 * 185.00012 * 25 24 23 28 28 C 1.54480 * 104.06221 * 241.22032 * 27 25 24 29 29 O 1.44423 * 104.80226 * 336.01713 * 28 27 25 30 30 C 1.44427 * 105.27512 * 40.51523 * 29 28 27 31 31 H 4.44644 * 5.63380 * 179.97438 * 4 1 2 32 32 H 1.08996 * 109.46560 * 232.98385 * 3 2 1 33 33 H 1.09007 * 109.46736 * 112.98399 * 3 2 1 34 34 H 1.09008 * 109.47403 * 60.00034 * 4 3 2 35 35 H 1.09003 * 109.47196 * 300.00174 * 4 3 2 36 36 H 1.08996 * 109.46500 * 59.99985 * 5 4 3 37 37 H 1.09003 * 109.46444 * 300.00396 * 5 4 3 38 38 H 1.09008 * 109.47034 * 66.25983 * 11 10 9 39 39 H 1.08996 * 109.47158 * 186.25817 * 11 10 9 40 40 H 1.08996 * 109.47033 * 306.26324 * 11 10 9 41 41 H 1.08998 * 109.46985 * 59.99820 * 14 12 10 42 42 H 1.08998 * 109.46871 * 180.02562 * 14 12 10 43 43 H 1.09003 * 109.46868 * 300.00068 * 14 12 10 44 44 H 0.97002 * 119.99453 * 180.02562 * 18 17 15 45 45 H 1.09000 * 109.47424 * 144.18518 * 24 23 9 46 46 H 1.09002 * 109.47011 * 24.18348 * 24 23 9 47 47 H 1.09001 * 110.51034 * 122.57242 * 27 25 24 48 48 H 1.09000 * 110.62245 * 359.91945 * 27 25 24 49 49 H 1.08996 * 110.37448 * 94.85136 * 28 27 25 50 50 H 1.08997 * 110.36734 * 217.19175 * 28 27 25 51 51 H 1.09005 * 110.37230 * 200.65424 * 30 29 28 52 52 H 1.09006 * 110.46228 * 78.36742 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1567 -1.4307 0.1762 5 6 4.6867 -1.4301 0.1755 6 6 5.1897 -2.8401 0.3485 7 7 5.4486 -3.4345 1.4787 8 7 5.8605 -4.6327 1.2623 9 6 5.8816 -4.8706 -0.0279 10 7 6.2633 -6.0531 -0.6413 11 6 5.3904 -7.1626 -0.2352 12 6 7.6718 -6.3613 -0.3599 13 1 8.2845 -5.4846 -0.5697 14 6 7.8246 -6.7500 1.1120 15 6 8.1191 -7.5069 -1.2310 16 1 7.4262 -7.9608 -1.9241 17 6 9.4125 -7.9760 -1.1425 18 7 10.2561 -7.4235 -0.2983 19 14 9.9672 -9.3955 -2.2228 20 1 9.8196 -9.0175 -3.6512 21 1 11.3909 -9.7071 -1.9383 22 1 9.1321 -10.5899 -1.9380 23 7 5.4596 -3.7327 -0.6516 24 6 5.3189 -3.5146 -2.0934 25 6 6.5788 -2.8334 -2.6316 26 1 6.8063 -1.9397 -2.0506 27 6 6.4065 -2.4787 -4.1255 28 6 7.5195 -3.2831 -4.8331 29 8 8.5183 -3.5060 -3.8140 30 6 7.7755 -3.8100 -2.6133 31 1 -1.0498 -0.0005 0.0003 32 1 3.0090 0.6195 0.8206 33 1 3.0091 0.4021 -0.9462 34 1 2.7936 -2.0497 -0.6444 35 1 2.7935 -1.8322 1.1223 36 1 5.0500 -0.8112 0.9959 37 1 5.0494 -1.0288 -0.7708 38 1 4.3833 -6.9905 -0.6153 39 1 5.7773 -8.0970 -0.6417 40 1 5.3626 -7.2235 0.8527 41 1 7.2119 -7.6267 1.3217 42 1 8.8698 -6.9782 1.3208 43 1 7.5011 -5.9214 1.7420 44 1 11.1662 -7.7534 -0.2363 45 1 4.4536 -2.8792 -2.2821 46 1 5.1820 -4.4730 -2.5942 47 1 6.5488 -1.4096 -4.2831 48 1 5.4247 -2.7892 -4.4830 49 1 7.1286 -4.2337 -5.1957 50 1 7.9398 -2.7057 -5.6565 51 1 8.3927 -3.6375 -1.7314 52 1 7.4239 -4.8416 -2.6335 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001335454713.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:43:54 Heat of formation + Delta-G solvation = 73.893801 kcal Electronic energy + Delta-G solvation = -32208.507580 eV Core-core repulsion = 28210.583738 eV Total energy + Delta-G solvation = -3997.923842 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -43.96422 -40.39913 -39.02377 -37.08969 -36.33917 -34.85259 -33.70204 -33.09485 -31.20768 -30.48402 -30.08499 -28.15308 -27.47869 -27.07632 -26.62516 -24.00500 -23.39932 -23.19768 -21.78750 -21.23856 -21.05478 -18.93695 -18.46754 -18.01561 -17.51159 -17.25988 -17.03567 -16.53435 -16.34775 -16.22687 -15.92692 -15.75760 -15.40457 -14.98236 -14.91160 -14.50888 -14.16958 -13.86183 -13.80980 -13.64661 -13.45518 -13.34855 -13.11313 -13.03183 -12.78263 -12.70110 -12.64295 -12.57699 -12.32130 -12.29611 -12.12833 -12.04651 -11.99947 -11.94018 -11.63235 -11.39782 -11.10779 -10.95377 -10.91357 -10.83476 -10.72740 -10.49402 -9.88423 -9.48551 -8.12195 -6.24861 0.79329 1.37131 1.44245 1.45600 1.52606 1.84202 1.97654 1.98705 2.41948 3.01319 3.08304 3.18773 3.32529 3.46088 3.59927 3.66209 3.83619 3.87997 4.04987 4.17093 4.19837 4.27413 4.33488 4.38589 4.41094 4.47172 4.48548 4.59352 4.67582 4.69139 4.75982 4.77392 4.87554 4.90154 4.90826 4.98219 5.02957 5.05719 5.09686 5.13211 5.16358 5.22017 5.25411 5.26761 5.31754 5.44772 5.64251 5.67562 5.88302 5.89814 6.07336 6.23255 6.67007 6.77617 6.84533 7.43949 7.82801 8.94111 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012302 B = 0.003458 C = 0.002938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2275.537521 B = 8094.554395 C = 9528.799492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.212 4.212 3 C -0.008 4.008 4 C -0.098 4.098 5 C -0.024 4.024 6 C 0.184 3.816 7 N -0.336 5.336 8 N -0.352 5.352 9 C 0.355 3.645 10 N -0.462 5.462 11 C 0.049 3.951 12 C 0.243 3.757 13 H 0.003 0.997 14 C -0.162 4.162 15 C -0.512 4.512 16 H 0.068 0.932 17 C 0.015 3.985 18 N -0.920 5.920 19 Si 0.960 3.040 20 H -0.271 1.271 21 H -0.290 1.290 22 H -0.267 1.267 23 N -0.463 5.463 24 C 0.118 3.882 25 C -0.127 4.127 26 H 0.092 0.908 27 C -0.127 4.127 28 C 0.030 3.970 29 O -0.407 6.407 30 C 0.055 3.945 31 H 0.237 0.763 32 H 0.101 0.899 33 H 0.113 0.887 34 H 0.067 0.933 35 H 0.052 0.948 36 H 0.109 0.891 37 H 0.116 0.884 38 H 0.073 0.927 39 H 0.083 0.917 40 H 0.023 0.977 41 H 0.031 0.969 42 H 0.057 0.943 43 H 0.034 0.966 44 H 0.261 0.739 45 H 0.139 0.861 46 H 0.100 0.900 47 H 0.104 0.896 48 H 0.111 0.889 49 H 0.059 0.941 50 H 0.109 0.891 51 H 0.042 0.958 52 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.707 16.083 -8.986 24.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.212 4.212 3 C -0.044 4.044 4 C -0.136 4.136 5 C -0.063 4.063 6 C -0.084 4.084 7 N -0.175 5.175 8 N -0.195 5.195 9 C -0.003 4.003 10 N -0.188 5.188 11 C -0.099 4.099 12 C 0.137 3.863 13 H 0.021 0.979 14 C -0.221 4.221 15 C -0.550 4.550 16 H 0.086 0.914 17 C -0.185 4.185 18 N -0.559 5.559 19 Si 0.786 3.214 20 H -0.196 1.196 21 H -0.216 1.216 22 H -0.191 1.191 23 N -0.155 5.155 24 C -0.003 4.003 25 C -0.146 4.146 26 H 0.110 0.890 27 C -0.165 4.165 28 C -0.046 4.046 29 O -0.327 6.327 30 C -0.022 4.022 31 H 0.253 0.747 32 H 0.120 0.880 33 H 0.132 0.868 34 H 0.085 0.915 35 H 0.071 0.929 36 H 0.127 0.873 37 H 0.135 0.865 38 H 0.091 0.909 39 H 0.102 0.898 40 H 0.042 0.958 41 H 0.050 0.950 42 H 0.076 0.924 43 H 0.053 0.947 44 H 0.070 0.930 45 H 0.157 0.843 46 H 0.119 0.881 47 H 0.122 0.878 48 H 0.129 0.871 49 H 0.077 0.923 50 H 0.127 0.873 51 H 0.060 0.940 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -16.181 15.898 -7.992 24.050 hybrid contribution 0.685 -1.264 -0.311 1.471 sum -15.495 14.634 -8.302 22.873 Atomic orbital electron populations 1.25667 0.97084 1.00112 1.01095 1.23753 0.95684 1.01075 1.00674 1.18794 0.83685 0.96614 1.05321 1.21374 0.92773 0.97011 1.02491 1.20262 0.95599 0.84131 1.06333 1.25479 1.02732 0.96730 0.83455 1.73876 1.17713 1.01725 1.24203 1.74608 1.20492 1.10319 1.14035 1.22815 1.00221 0.90052 0.87163 1.59301 1.06113 0.98675 1.54696 1.22247 0.95543 0.93557 0.98547 1.18971 0.80184 0.95055 0.92046 0.97886 1.22321 1.01883 0.98859 0.99072 1.21182 0.96579 1.16045 1.21220 0.91360 1.25692 0.96699 0.99392 0.96671 1.70052 1.05601 1.42969 1.37305 0.85569 0.76964 0.79646 0.79228 1.19578 1.21558 1.19145 1.46541 1.49095 1.10363 1.09537 1.22271 0.99295 1.04067 0.74715 1.22883 0.93747 0.98586 0.99405 0.88958 1.22910 1.00687 1.02486 0.90454 1.23719 0.89208 0.99865 0.91848 1.89122 1.31751 1.91217 1.20575 1.23424 0.92624 0.99180 0.86935 0.74690 0.88050 0.86847 0.91458 0.92893 0.87251 0.86549 0.90881 0.89800 0.95786 0.94961 0.92396 0.94704 0.93028 0.84342 0.88139 0.87797 0.87079 0.92266 0.87254 0.93974 0.91831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.26 19.25 74.32 1.43 -1.83 16 2 C -0.21 -3.32 13.34 31.13 0.42 -2.90 16 3 C -0.01 -0.08 5.70 28.79 0.16 0.08 16 4 C -0.10 -1.41 5.15 30.59 0.16 -1.25 16 5 C -0.02 -0.38 5.53 29.85 0.17 -0.22 16 6 C 0.18 5.34 7.32 137.64 1.01 6.35 16 7 N -0.34 -13.15 12.18 -49.54 -0.60 -13.75 16 8 N -0.35 -15.70 9.75 -58.01 -0.57 -16.26 16 9 C 0.36 14.24 6.18 260.11 1.61 15.85 16 10 N -0.46 -19.54 4.15 -711.00 -2.95 -22.48 16 11 C 0.05 1.88 8.52 127.69 1.09 2.97 16 12 C 0.24 12.43 1.71 44.17 0.08 12.51 16 13 H 0.00 0.19 6.66 -2.39 -0.02 0.18 16 14 C -0.16 -8.62 8.18 71.98 0.59 -8.03 16 15 C -0.51 -27.27 7.82 25.60 0.20 -27.07 16 16 H 0.07 3.50 7.18 -2.91 -0.02 3.48 16 17 C 0.01 0.80 5.30 84.65 0.45 1.25 16 18 N -0.92 -54.03 11.32 21.45 0.24 -53.79 16 19 Si 0.96 43.48 29.54 68.60 2.03 45.50 16 20 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 21 H -0.29 -13.13 7.11 99.48 0.71 -12.43 16 22 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 23 N -0.46 -13.95 2.70 -514.86 -1.39 -15.34 16 24 C 0.12 2.46 5.01 86.38 0.43 2.89 16 25 C -0.13 -2.78 3.34 -9.78 -0.03 -2.81 16 26 H 0.09 1.90 7.98 -2.39 -0.02 1.88 16 27 C -0.13 -1.84 6.73 31.61 0.21 -1.63 16 28 C 0.03 0.65 7.63 72.49 0.55 1.20 16 29 O -0.41 -14.19 11.65 -148.98 -1.74 -15.92 16 30 C 0.06 1.95 6.33 72.48 0.46 2.41 16 31 H 0.24 1.91 7.80 -4.43 -0.03 1.87 16 32 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.11 0.64 8.14 -2.38 -0.02 0.62 16 34 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 35 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.12 1.12 7.81 -2.39 -0.02 1.10 16 38 H 0.07 2.37 8.14 -2.38 -0.02 2.35 16 39 H 0.08 3.31 6.64 -2.39 -0.02 3.30 16 40 H 0.02 0.98 6.69 -2.39 -0.02 0.97 16 41 H 0.03 1.63 6.56 -2.39 -0.02 1.62 16 42 H 0.06 3.39 6.07 -2.39 -0.01 3.37 16 43 H 0.03 1.85 5.86 -2.39 -0.01 1.83 16 44 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 45 H 0.14 1.58 8.07 -2.39 -0.02 1.57 16 46 H 0.10 2.30 7.93 -2.39 -0.02 2.28 16 47 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 48 H 0.11 0.96 7.74 -2.39 -0.02 0.94 16 49 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 50 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 51 H 0.04 1.81 7.54 -2.38 -0.02 1.79 16 52 H 0.06 2.59 6.52 -2.38 -0.02 2.57 16 Total: -1.00 -77.42 414.29 4.90 -72.52 By element: Atomic # 1 Polarization: 18.85 SS G_CDS: 0.90 Total: 19.75 kcal Atomic # 6 Polarization: -9.20 SS G_CDS: 8.97 Total: -0.22 kcal Atomic # 7 Polarization: -116.36 SS G_CDS: -5.27 Total: -121.63 kcal Atomic # 8 Polarization: -14.19 SS G_CDS: -1.74 Total: -15.92 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.50 kcal Total: -77.42 4.90 -72.52 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335454713.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.414 kcal (2) G-P(sol) polarization free energy of solvation -77.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds