Wall clock time and date at job start Wed Apr 1 2020 05:43:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 C 1.53000 * 109.47216 * 19.06536 * 3 2 1 5 5 C 1.52994 * 109.47047 * 180.02562 * 4 3 2 6 6 C 1.50703 * 109.47071 * 180.02562 * 5 4 3 7 7 N 1.30294 * 126.34436 * 277.08218 * 6 5 4 8 8 N 1.28531 * 110.04848 * 180.30928 * 7 6 5 9 9 C 1.31214 * 109.86166 * 359.72558 * 8 7 6 10 10 N 1.38588 * 126.47327 * 179.97438 * 9 8 7 11 11 C 1.46897 * 111.00023 * 112.69973 * 10 9 8 12 12 C 1.46901 * 110.99780 * 348.73979 * 10 9 8 13 13 H 1.09004 * 109.47042 * 60.00536 * 12 10 9 14 14 C 1.52999 * 109.47637 * 300.00534 * 12 10 9 15 15 C 1.50702 * 109.47119 * 180.02562 * 12 10 9 16 16 H 1.07998 * 119.99849 * 5.70329 * 15 12 10 17 17 C 1.37874 * 120.00311 * 185.70146 * 15 12 10 18 18 N 1.31517 * 119.99759 * 5.87188 * 17 15 12 19 19 Si 1.86798 * 120.00049 * 185.87188 * 17 15 12 20 20 H 1.48490 * 109.47296 * 94.99548 * 19 17 15 21 21 H 1.48504 * 109.46978 * 214.99544 * 19 17 15 22 22 H 1.48501 * 109.47156 * 334.99234 * 19 17 15 23 23 N 1.36450 * 107.05760 * 359.97438 * 9 8 7 24 24 C 1.46498 * 127.14310 * 180.02562 * 23 9 8 25 25 C 1.53003 * 109.47170 * 276.60707 * 24 23 9 26 26 H 1.09000 * 110.90710 * 57.77342 * 25 24 23 27 27 C 1.55300 * 110.84646 * 181.36027 * 25 24 23 28 28 C 1.54953 * 100.93938 * 152.32470 * 27 25 24 29 29 O 1.43651 * 105.13573 * 323.55566 * 28 27 25 30 30 C 1.43233 * 109.97014 * 24.42782 * 29 28 27 31 31 H 4.44650 * 5.63315 * 179.97438 * 4 1 2 32 32 H 1.09007 * 109.47105 * 259.06587 * 3 2 1 33 33 H 1.08997 * 109.47028 * 139.06677 * 3 2 1 34 34 H 1.08994 * 109.46798 * 60.00101 * 4 3 2 35 35 H 1.09008 * 109.46808 * 299.99955 * 4 3 2 36 36 H 1.08998 * 109.47324 * 59.99794 * 5 4 3 37 37 H 1.09001 * 109.47438 * 299.99892 * 5 4 3 38 38 H 1.08994 * 109.47393 * 56.17889 * 11 10 9 39 39 H 1.09000 * 109.46809 * 176.17869 * 11 10 9 40 40 H 1.09001 * 109.47189 * 296.17362 * 11 10 9 41 41 H 1.08996 * 109.47141 * 185.62803 * 14 12 10 42 42 H 1.09004 * 109.46892 * 305.62973 * 14 12 10 43 43 H 1.09001 * 109.47032 * 65.62699 * 14 12 10 44 44 H 0.97001 * 119.99965 * 180.02562 * 18 17 15 45 45 H 1.08993 * 109.47290 * 156.60423 * 24 23 9 46 46 H 1.09007 * 109.46795 * 36.60476 * 24 23 9 47 47 H 1.08995 * 111.12494 * 270.24052 * 27 25 24 48 48 H 1.09000 * 111.12649 * 34.40605 * 27 25 24 49 49 H 1.08995 * 110.30895 * 204.64403 * 28 27 25 50 50 H 1.09001 * 110.39650 * 82.50954 * 28 27 25 51 51 H 1.09005 * 109.83164 * 238.77300 * 30 29 28 52 52 H 1.08999 * 109.83189 * 117.80153 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1566 -1.3625 -0.4712 5 6 4.6866 -1.3620 -0.4706 6 6 5.1896 -2.7044 -0.9353 7 7 5.3250 -3.7738 -0.2034 8 7 5.7849 -4.7399 -0.9157 9 6 5.9634 -4.3368 -2.1515 10 7 6.4451 -5.0979 -3.2048 11 6 5.4006 -5.3223 -4.2130 12 6 6.9961 -6.3722 -2.7247 13 1 6.2154 -6.9363 -2.2144 14 6 8.1450 -6.0972 -1.7524 15 6 7.5095 -7.1703 -3.8954 16 1 7.5188 -6.7346 -4.8835 17 6 7.9674 -8.4568 -3.7050 18 7 7.8499 -9.0289 -2.5266 19 14 8.7546 -9.3872 -5.1206 20 1 10.2298 -9.2310 -5.0562 21 1 8.4045 -10.8270 -5.0222 22 1 8.2550 -8.8433 -6.4090 23 7 5.5852 -3.0268 -2.2039 24 6 5.6050 -2.1465 -3.3747 25 6 7.0092 -1.5652 -3.5520 26 1 7.7483 -2.3593 -3.6582 27 6 7.0579 -0.5987 -4.7666 28 6 8.2040 0.3527 -4.3395 29 8 8.0586 0.5008 -2.9181 30 6 7.3702 -0.6324 -2.3761 31 1 -1.0498 -0.0004 0.0001 32 1 3.0093 0.1958 1.0091 33 1 3.0090 0.7772 -0.6733 34 1 2.7934 -1.5575 -1.4801 35 1 2.7936 -2.1390 0.2022 36 1 5.0495 -1.1670 0.5386 37 1 5.0500 -0.5854 -1.1436 38 1 5.0116 -4.3626 -4.5531 39 1 5.8230 -5.8637 -5.0595 40 1 4.5921 -5.9074 -3.7746 41 1 8.6183 -7.0386 -1.4737 42 1 8.8790 -5.4492 -2.2314 43 1 7.7560 -5.6077 -0.8596 44 1 8.1724 -9.9339 -2.3925 45 1 4.8914 -1.3352 -3.2315 46 1 5.3331 -2.7170 -4.2629 47 1 7.3109 -1.1318 -5.6830 48 1 6.1182 -0.0573 -4.8758 49 1 8.0978 1.3185 -4.8333 50 1 9.1722 -0.0884 -4.5767 51 1 6.4613 -0.3059 -1.8706 52 1 8.0176 -1.1569 -1.6733 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001335454715.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:43:58 Heat of formation + Delta-G solvation = 75.836316 kcal Electronic energy + Delta-G solvation = -31796.141618 eV Core-core repulsion = 27798.302010 eV Total energy + Delta-G solvation = -3997.839608 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -43.98350 -40.45888 -38.91173 -37.12089 -36.45509 -34.86636 -33.74146 -33.11862 -31.36608 -30.88226 -30.40310 -28.57869 -27.22647 -27.09052 -25.98257 -23.95096 -23.44593 -23.25668 -22.19785 -21.25065 -20.94192 -18.97286 -18.55104 -18.06618 -17.62510 -17.48379 -17.10439 -16.58069 -16.49657 -16.03313 -15.88204 -15.73731 -15.54030 -15.10776 -14.76828 -14.74529 -14.29745 -14.08322 -13.87424 -13.71841 -13.57659 -13.48971 -13.20545 -12.96599 -12.79585 -12.67464 -12.63273 -12.45512 -12.39312 -12.28332 -12.17054 -12.07321 -12.06392 -11.85248 -11.67839 -11.43279 -11.14273 -11.04404 -10.94371 -10.92187 -10.62237 -10.49660 -10.34557 -9.08071 -8.16033 -6.28989 0.84626 1.31835 1.43765 1.45427 1.55480 1.85960 1.97041 1.98862 2.40545 2.87213 2.98118 3.16428 3.29341 3.37546 3.54275 3.60625 3.65094 3.87891 3.93533 4.02133 4.14320 4.23214 4.25538 4.30485 4.32712 4.42085 4.45639 4.51198 4.55917 4.71280 4.75913 4.77659 4.79130 4.83200 4.86791 4.90285 4.96916 4.98293 5.03972 5.06940 5.16787 5.22054 5.23573 5.24955 5.31583 5.41321 5.54520 5.64164 5.88248 5.97271 5.99618 6.12268 6.60303 6.76155 6.82567 7.39685 7.90841 8.93304 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010173 B = 0.003285 C = 0.002737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2751.774835 B = 8522.360460 C =10227.658308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.213 4.213 3 C -0.008 4.008 4 C -0.099 4.099 5 C -0.026 4.026 6 C 0.179 3.821 7 N -0.331 5.331 8 N -0.369 5.369 9 C 0.368 3.632 10 N -0.454 5.454 11 C 0.042 3.958 12 C 0.243 3.757 13 H -0.020 1.020 14 C -0.114 4.114 15 C -0.525 4.525 16 H 0.075 0.925 17 C 0.013 3.987 18 N -0.921 5.921 19 Si 0.967 3.033 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.257 1.257 23 N -0.474 5.474 24 C 0.115 3.885 25 C -0.137 4.137 26 H 0.069 0.931 27 C -0.133 4.133 28 C 0.043 3.957 29 O -0.402 6.402 30 C 0.055 3.945 31 H 0.237 0.763 32 H 0.102 0.898 33 H 0.113 0.887 34 H 0.065 0.935 35 H 0.052 0.948 36 H 0.110 0.890 37 H 0.114 0.886 38 H 0.089 0.911 39 H 0.092 0.908 40 H 0.011 0.989 41 H 0.046 0.954 42 H 0.028 0.972 43 H 0.029 0.971 44 H 0.263 0.737 45 H 0.134 0.866 46 H 0.109 0.891 47 H 0.100 0.900 48 H 0.109 0.891 49 H 0.110 0.890 50 H 0.054 0.946 51 H 0.093 0.907 52 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.908 24.608 -5.226 26.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.213 4.213 3 C -0.045 4.045 4 C -0.138 4.138 5 C -0.065 4.065 6 C -0.090 4.090 7 N -0.169 5.169 8 N -0.212 5.212 9 C 0.011 3.989 10 N -0.179 5.179 11 C -0.105 4.105 12 C 0.137 3.863 13 H -0.003 1.003 14 C -0.173 4.173 15 C -0.563 4.563 16 H 0.093 0.907 17 C -0.187 4.187 18 N -0.560 5.560 19 Si 0.792 3.208 20 H -0.204 1.204 21 H -0.214 1.214 22 H -0.181 1.181 23 N -0.170 5.170 24 C -0.006 4.006 25 C -0.156 4.156 26 H 0.088 0.912 27 C -0.171 4.171 28 C -0.032 4.032 29 O -0.321 6.321 30 C -0.021 4.021 31 H 0.254 0.746 32 H 0.121 0.879 33 H 0.131 0.869 34 H 0.084 0.916 35 H 0.071 0.929 36 H 0.129 0.871 37 H 0.132 0.868 38 H 0.107 0.893 39 H 0.111 0.889 40 H 0.030 0.970 41 H 0.065 0.935 42 H 0.047 0.953 43 H 0.048 0.952 44 H 0.072 0.928 45 H 0.152 0.848 46 H 0.127 0.873 47 H 0.118 0.882 48 H 0.128 0.872 49 H 0.128 0.872 50 H 0.072 0.928 51 H 0.111 0.889 52 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -8.430 23.925 -4.060 25.690 hybrid contribution 0.020 -1.379 -0.913 1.654 sum -8.411 22.546 -4.973 24.573 Atomic orbital electron populations 1.25674 0.97086 1.00194 1.00926 1.23747 0.95689 1.01046 1.00780 1.18803 0.83750 0.97454 1.04445 1.21388 0.92880 0.97419 1.02111 1.20356 0.95640 0.86196 1.04272 1.25317 1.02868 0.99912 0.80889 1.73857 1.17743 0.97704 1.27621 1.74698 1.21259 1.22936 1.02337 1.22997 0.97823 0.84818 0.93300 1.59078 1.30078 1.20174 1.08530 1.22409 0.91461 1.01552 0.95087 1.18899 0.91783 0.81761 0.93857 1.00262 1.21578 0.98556 0.99521 0.97629 1.21329 1.42509 0.98114 0.94335 0.90717 1.25808 0.96269 0.98247 0.98380 1.70146 1.46700 1.14533 1.24625 0.85412 0.78557 0.77319 0.79558 1.20398 1.21352 1.18072 1.46375 1.50760 1.08782 1.11042 1.22250 0.98078 0.94033 0.86238 1.23035 0.97028 0.98619 0.96956 0.91212 1.23263 1.00805 0.95949 0.97078 1.23582 0.98115 1.01265 0.80279 1.88385 1.78874 1.42226 1.22655 1.23302 0.97006 0.86273 0.95503 0.74638 0.87944 0.86854 0.91584 0.92909 0.87125 0.86798 0.89256 0.88894 0.96982 0.93516 0.95252 0.95164 0.92841 0.84773 0.87286 0.88175 0.87232 0.87174 0.92791 0.88882 0.94437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.51 19.25 74.32 1.43 -2.08 16 2 C -0.21 -3.60 13.34 31.13 0.42 -3.18 16 3 C -0.01 -0.10 5.70 28.79 0.16 0.07 16 4 C -0.10 -1.59 5.15 30.59 0.16 -1.43 16 5 C -0.03 -0.43 5.26 29.85 0.16 -0.27 16 6 C 0.18 5.24 7.04 137.64 0.97 6.21 16 7 N -0.33 -13.50 12.18 -49.53 -0.60 -14.11 16 8 N -0.37 -17.48 9.48 -58.00 -0.55 -18.03 16 9 C 0.37 14.98 6.41 260.11 1.67 16.64 16 10 N -0.45 -19.35 4.66 -711.01 -3.31 -22.67 16 11 C 0.04 1.49 9.10 127.69 1.16 2.65 16 12 C 0.24 12.86 1.58 44.17 0.07 12.93 16 13 H -0.02 -1.27 7.96 -2.39 -0.02 -1.29 16 14 C -0.11 -6.18 8.80 71.98 0.63 -5.55 16 15 C -0.52 -28.14 7.71 25.60 0.20 -27.94 16 16 H 0.07 3.77 6.64 -2.91 -0.02 3.75 16 17 C 0.01 0.69 5.21 84.65 0.44 1.13 16 18 N -0.92 -54.84 12.00 21.45 0.26 -54.59 16 19 Si 0.97 42.80 29.54 68.60 2.03 44.82 16 20 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 21 H -0.29 -12.70 7.11 99.48 0.71 -11.99 16 22 H -0.26 -10.58 7.11 99.48 0.71 -9.88 16 23 N -0.47 -13.79 2.64 -514.84 -1.36 -15.15 16 24 C 0.12 2.10 5.16 86.38 0.45 2.54 16 25 C -0.14 -2.61 3.26 -9.53 -0.03 -2.64 16 26 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 27 C -0.13 -1.57 6.62 32.05 0.21 -1.36 16 28 C 0.04 0.64 7.78 72.65 0.57 1.21 16 29 O -0.40 -8.52 11.36 -148.98 -1.69 -10.21 16 30 C 0.06 1.14 6.98 72.45 0.51 1.64 16 31 H 0.24 2.17 7.80 -4.43 -0.03 2.13 16 32 H 0.10 0.99 8.14 -2.38 -0.02 0.97 16 33 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.05 1.14 8.14 -2.38 -0.02 1.12 16 36 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.11 1.20 4.68 -2.39 -0.01 1.19 16 38 H 0.09 2.33 5.50 -2.39 -0.01 2.32 16 39 H 0.09 3.36 6.34 -2.39 -0.02 3.34 16 40 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 41 H 0.05 2.73 6.66 -2.39 -0.02 2.71 16 42 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 43 H 0.03 1.63 6.01 -2.39 -0.01 1.61 16 44 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 45 H 0.13 1.38 7.35 -2.39 -0.02 1.36 16 46 H 0.11 1.86 5.60 -2.38 -0.01 1.85 16 47 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 48 H 0.11 0.73 8.04 -2.39 -0.02 0.71 16 49 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 50 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 51 H 0.09 1.46 4.64 -2.38 -0.01 1.45 16 52 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 Total: -1.00 -79.06 410.78 4.84 -74.22 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: 0.91 Total: 15.14 kcal Atomic # 6 Polarization: -8.59 SS G_CDS: 9.16 Total: 0.57 kcal Atomic # 7 Polarization: -118.98 SS G_CDS: -5.57 Total: -124.54 kcal Atomic # 8 Polarization: -8.52 SS G_CDS: -1.69 Total: -10.21 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.82 kcal Total: -79.06 4.84 -74.22 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335454715.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.053 kcal (2) G-P(sol) polarization free energy of solvation -79.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.217 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds