Wall clock time and date at job start Wed Apr 1 2020 05:44:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47191 * 179.97438 * 2 1 4 4 C 1.52998 * 109.47390 * 342.50616 * 3 2 1 5 5 C 1.53003 * 109.47337 * 179.97438 * 4 3 2 6 6 C 1.50693 * 109.47362 * 175.26443 * 5 4 3 7 7 N 1.30296 * 126.34925 * 94.15777 * 6 5 4 8 8 N 1.28526 * 110.05544 * 179.97438 * 7 6 5 9 9 C 1.31214 * 109.85919 * 0.02562 * 8 7 6 10 10 N 1.38582 * 126.47206 * 179.97438 * 9 8 7 11 11 C 1.46901 * 111.00262 * 254.82632 * 10 9 8 12 12 C 1.46902 * 111.00071 * 18.78543 * 10 9 8 13 13 H 1.09001 * 109.46810 * 299.99404 * 12 10 9 14 14 C 1.52998 * 109.47240 * 59.99961 * 12 10 9 15 15 C 1.50705 * 109.47073 * 180.02562 * 12 10 9 16 16 H 1.08003 * 119.99821 * 359.97438 * 15 12 10 17 17 C 1.37874 * 119.99737 * 180.02562 * 15 12 10 18 18 N 1.31521 * 119.99823 * 179.97438 * 17 15 12 19 19 Si 1.86803 * 120.00177 * 359.97438 * 17 15 12 20 20 H 1.48501 * 109.46913 * 90.00424 * 19 17 15 21 21 H 1.48494 * 109.46849 * 210.00281 * 19 17 15 22 22 H 1.48493 * 109.46914 * 330.00385 * 19 17 15 23 23 N 1.36456 * 107.05511 * 359.75258 * 9 8 7 24 24 C 1.46498 * 127.13508 * 180.24121 * 23 9 8 25 25 C 1.53003 * 109.46909 * 95.76413 * 24 23 9 26 26 H 1.08993 * 110.75226 * 59.25395 * 25 24 23 27 27 C 1.55302 * 110.84803 * 182.95178 * 25 24 23 28 28 C 1.54947 * 100.94256 * 152.31843 * 27 25 24 29 29 O 1.43642 * 105.13593 * 323.55795 * 28 27 25 30 30 C 1.43228 * 109.97217 * 24.42349 * 29 28 27 31 31 H 4.44647 * 5.63339 * 179.97438 * 4 1 2 32 32 H 1.09007 * 109.47357 * 222.50824 * 3 2 1 33 33 H 1.09001 * 109.47189 * 102.50628 * 3 2 1 34 34 H 1.09004 * 109.47107 * 60.00123 * 4 3 2 35 35 H 1.09000 * 109.47703 * 300.00113 * 4 3 2 36 36 H 1.09005 * 109.47137 * 295.26467 * 5 4 3 37 37 H 1.09003 * 109.46654 * 55.26179 * 5 4 3 38 38 H 1.09006 * 109.46641 * 66.78962 * 11 10 9 39 39 H 1.09002 * 109.47288 * 186.78762 * 11 10 9 40 40 H 1.09000 * 109.47340 * 306.79391 * 11 10 9 41 41 H 1.08996 * 109.47388 * 180.02562 * 14 12 10 42 42 H 1.08999 * 109.47004 * 300.00272 * 14 12 10 43 43 H 1.09003 * 109.47203 * 60.00194 * 14 12 10 44 44 H 0.96993 * 120.00073 * 179.97438 * 18 17 15 45 45 H 1.08998 * 109.46807 * 215.75586 * 24 23 9 46 46 H 1.08999 * 109.47925 * 335.76040 * 24 23 9 47 47 H 1.09001 * 111.12694 * 270.24255 * 27 25 24 48 48 H 1.09004 * 111.12815 * 34.39893 * 27 25 24 49 49 H 1.08996 * 110.30975 * 204.63459 * 28 27 25 50 50 H 1.09004 * 110.39062 * 82.51687 * 28 27 25 51 51 H 1.09000 * 109.83371 * 238.77459 * 30 29 28 52 52 H 1.09001 * 109.82969 * 117.80255 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 6 3.1566 -1.3748 0.4336 5 6 4.6866 -1.3743 0.4330 6 6 5.1897 -2.6892 0.9705 7 7 5.5189 -3.7357 0.2675 8 7 5.9067 -4.6839 1.0436 9 6 5.8446 -4.2902 2.2938 10 7 6.1816 -5.0381 3.4107 11 6 4.9796 -5.4893 4.1246 12 6 7.0347 -6.1765 3.0442 13 1 6.5026 -6.8179 2.3417 14 6 8.3197 -5.6618 2.3924 15 6 7.3793 -6.9648 4.2815 16 1 7.0026 -6.6512 5.2439 17 6 8.1763 -8.0857 4.1850 18 7 8.4775 -8.7734 5.2649 19 14 8.8284 -8.6276 2.5205 20 1 10.1396 -7.9780 2.2672 21 1 8.9970 -10.1029 2.5114 22 1 7.8672 -8.2325 1.4598 23 7 5.3902 -3.0035 2.2860 24 6 5.1618 -2.1392 3.4466 25 6 6.3898 -1.2552 3.6737 26 1 6.5898 -0.6394 2.7969 27 6 6.2118 -0.3772 4.9422 28 6 7.6873 -0.1767 5.3705 29 8 8.3376 -1.4217 5.0699 30 6 7.6226 -2.1103 4.0374 31 1 -1.0498 -0.0003 0.0003 32 1 3.0090 0.7584 0.6944 33 1 3.0092 0.2234 -1.0033 34 1 2.7937 -2.1327 -0.2608 35 1 2.7934 -1.5977 1.4369 36 1 5.0495 -1.2354 -0.5855 37 1 5.0499 -0.5617 1.0622 38 1 4.4347 -6.2013 3.5046 39 1 5.2706 -5.9693 5.0589 40 1 4.3416 -4.6321 4.3397 41 1 8.9525 -6.5065 2.1201 42 1 8.0700 -5.0919 1.4975 43 1 8.8518 -5.0204 3.0950 44 1 9.0379 -9.5621 5.1969 45 1 4.2900 -1.5105 3.2654 46 1 4.9888 -2.7545 4.3296 47 1 5.7407 0.5750 4.6981 48 1 5.6482 -0.9065 5.7106 49 1 7.7462 0.0327 6.4386 50 1 8.1412 0.6345 4.8011 51 1 7.3015 -3.0873 4.3984 52 1 8.2610 -2.2298 3.1620 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001335454716.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:44:03 Heat of formation + Delta-G solvation = 80.104830 kcal Electronic energy + Delta-G solvation = -32128.065129 eV Core-core repulsion = 28130.410617 eV Total energy + Delta-G solvation = -3997.654512 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -44.02695 -40.41116 -39.09152 -37.13258 -36.41106 -34.88117 -33.72180 -33.17467 -32.12850 -30.92293 -30.34057 -28.50504 -27.29735 -27.03371 -26.12293 -23.87475 -23.54084 -23.20464 -22.08399 -21.15497 -21.11820 -19.00842 -18.93171 -17.99778 -17.74121 -17.49002 -17.05889 -16.80063 -16.45915 -16.07388 -15.93278 -15.68642 -15.62837 -15.14239 -14.90181 -14.59866 -14.45201 -14.20332 -14.03068 -13.81961 -13.67213 -13.59195 -13.52606 -13.06071 -12.88302 -12.75547 -12.65459 -12.52727 -12.39737 -12.34021 -12.16260 -12.00341 -11.95777 -11.80010 -11.55219 -11.50698 -11.20600 -11.10119 -10.99950 -10.91447 -10.79497 -10.53093 -10.33891 -9.20862 -8.34760 -6.37729 0.79563 1.25347 1.28785 1.32351 1.42929 1.82466 1.97304 1.98223 2.26565 2.80434 2.95698 3.01554 3.29407 3.39627 3.56502 3.62154 3.75573 3.90239 3.94914 4.03246 4.18560 4.26127 4.26956 4.31026 4.38248 4.40095 4.42428 4.45634 4.48556 4.55084 4.61978 4.65364 4.71786 4.81415 4.85397 4.89715 4.90948 4.92771 4.97793 5.01742 5.02726 5.07929 5.22829 5.25231 5.26588 5.27263 5.32204 5.45149 5.71239 5.82228 6.09298 6.16377 6.53830 6.66547 6.77244 7.26531 7.83713 8.80130 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010338 B = 0.003629 C = 0.002983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2707.837385 B = 7713.217601 C = 9384.288069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.211 4.211 3 C -0.007 4.007 4 C -0.100 4.100 5 C -0.022 4.022 6 C 0.185 3.815 7 N -0.330 5.330 8 N -0.367 5.367 9 C 0.365 3.635 10 N -0.449 5.449 11 C 0.044 3.956 12 C 0.212 3.788 13 H 0.000 1.000 14 C -0.136 4.136 15 C -0.508 4.508 16 H 0.063 0.937 17 C 0.032 3.968 18 N -0.934 5.934 19 Si 0.929 3.071 20 H -0.269 1.269 21 H -0.291 1.291 22 H -0.263 1.263 23 N -0.469 5.469 24 C 0.114 3.886 25 C -0.125 4.125 26 H 0.106 0.894 27 C -0.131 4.131 28 C 0.037 3.963 29 O -0.416 6.416 30 C 0.051 3.949 31 H 0.235 0.765 32 H 0.115 0.885 33 H 0.102 0.898 34 H 0.052 0.948 35 H 0.065 0.935 36 H 0.110 0.890 37 H 0.120 0.880 38 H 0.021 0.979 39 H 0.084 0.916 40 H 0.087 0.913 41 H 0.037 0.963 42 H 0.046 0.954 43 H 0.050 0.950 44 H 0.268 0.732 45 H 0.140 0.860 46 H 0.098 0.902 47 H 0.126 0.874 48 H 0.088 0.912 49 H 0.095 0.905 50 H 0.071 0.929 51 H 0.069 0.931 52 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.248 26.423 -4.881 29.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.211 4.211 3 C -0.044 4.044 4 C -0.139 4.139 5 C -0.062 4.062 6 C -0.084 4.084 7 N -0.169 5.169 8 N -0.211 5.211 9 C 0.007 3.993 10 N -0.173 5.173 11 C -0.102 4.102 12 C 0.105 3.895 13 H 0.018 0.982 14 C -0.194 4.194 15 C -0.546 4.546 16 H 0.081 0.919 17 C -0.167 4.167 18 N -0.573 5.573 19 Si 0.757 3.243 20 H -0.195 1.195 21 H -0.218 1.218 22 H -0.188 1.188 23 N -0.164 5.164 24 C -0.007 4.007 25 C -0.145 4.145 26 H 0.125 0.875 27 C -0.168 4.168 28 C -0.038 4.038 29 O -0.336 6.336 30 C -0.025 4.025 31 H 0.252 0.748 32 H 0.133 0.867 33 H 0.120 0.880 34 H 0.071 0.929 35 H 0.084 0.916 36 H 0.128 0.872 37 H 0.138 0.862 38 H 0.040 0.960 39 H 0.102 0.898 40 H 0.105 0.895 41 H 0.055 0.945 42 H 0.065 0.935 43 H 0.069 0.931 44 H 0.078 0.922 45 H 0.158 0.842 46 H 0.117 0.883 47 H 0.144 0.856 48 H 0.106 0.894 49 H 0.113 0.887 50 H 0.090 0.910 51 H 0.087 0.913 52 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -12.448 25.575 -5.561 28.983 hybrid contribution -0.015 -1.044 -0.015 1.044 sum -12.463 24.531 -5.576 28.075 Atomic orbital electron populations 1.25669 0.97126 1.00299 1.01068 1.23784 0.95739 1.00946 1.00662 1.18808 0.83526 0.97386 1.04639 1.21397 0.93073 0.97285 1.02146 1.20257 0.95311 0.86956 1.03634 1.25443 1.03058 1.00256 0.79612 1.73868 1.17002 0.98625 1.27369 1.74635 1.23676 1.23234 0.99538 1.22784 0.98757 0.85787 0.91950 1.58810 1.17476 1.24057 1.16967 1.22364 0.88931 0.99865 0.99085 1.19341 0.89605 0.86015 0.94551 0.98204 1.22027 0.98307 0.99721 0.99302 1.21047 1.31065 1.08980 0.93545 0.91883 1.25437 0.96035 0.96262 0.98960 1.69955 1.38658 1.18955 1.29773 0.86153 0.79795 0.76450 0.81912 1.19543 1.21829 1.18750 1.46369 1.50797 1.10355 1.08841 1.22239 0.99504 0.92696 0.86247 1.23078 0.93340 0.96691 1.01352 0.87539 1.23268 0.96841 1.01528 0.95195 1.23665 0.92195 0.85936 1.02047 1.88435 1.53225 1.34961 1.56957 1.23202 0.92797 0.96763 0.89761 0.74844 0.86703 0.87953 0.92947 0.91626 0.87205 0.86219 0.95986 0.89751 0.89497 0.94481 0.93474 0.93070 0.92226 0.84232 0.88325 0.85556 0.89352 0.88685 0.91038 0.91283 0.94796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -3.08 19.25 74.32 1.43 -1.65 16 2 C -0.21 -3.01 13.34 31.12 0.42 -2.59 16 3 C -0.01 -0.06 5.70 28.79 0.16 0.10 16 4 C -0.10 -1.22 5.15 30.59 0.16 -1.06 16 5 C -0.02 -0.29 5.50 29.85 0.16 -0.12 16 6 C 0.19 4.76 7.32 137.64 1.01 5.76 16 7 N -0.33 -12.10 12.18 -49.54 -0.60 -12.70 16 8 N -0.37 -15.71 9.91 -58.00 -0.57 -16.29 16 9 C 0.36 13.62 5.61 260.11 1.46 15.08 16 10 N -0.45 -18.32 3.43 -710.98 -2.44 -20.76 16 11 C 0.04 1.60 8.97 127.69 1.15 2.75 16 12 C 0.21 10.51 1.32 44.17 0.06 10.57 16 13 H 0.00 0.02 6.99 -2.39 -0.02 0.00 16 14 C -0.14 -6.60 8.50 71.98 0.61 -5.98 16 15 C -0.51 -28.54 8.54 25.60 0.22 -28.32 16 16 H 0.06 3.76 6.64 -2.91 -0.02 3.74 16 17 C 0.03 1.89 5.45 84.65 0.46 2.35 16 18 N -0.93 -57.52 13.96 21.45 0.30 -57.22 16 19 Si 0.93 47.21 24.37 68.60 1.67 48.88 16 20 H -0.27 -13.24 6.87 99.48 0.68 -12.56 16 21 H -0.29 -14.44 7.11 99.48 0.71 -13.73 16 22 H -0.26 -13.36 6.53 99.48 0.65 -12.71 16 23 N -0.47 -12.35 2.62 -514.86 -1.35 -13.70 16 24 C 0.11 1.91 5.17 86.38 0.45 2.36 16 25 C -0.13 -2.06 3.27 -9.53 -0.03 -2.09 16 26 H 0.11 1.40 7.84 -2.39 -0.02 1.38 16 27 C -0.13 -1.41 6.62 32.05 0.21 -1.20 16 28 C 0.04 0.63 7.78 72.65 0.56 1.20 16 29 O -0.42 -12.32 11.36 -148.98 -1.69 -14.01 16 30 C 0.05 1.49 6.89 72.45 0.50 1.99 16 31 H 0.23 1.76 7.80 -4.43 -0.03 1.72 16 32 H 0.11 0.37 8.14 -2.38 -0.02 0.35 16 33 H 0.10 0.64 8.14 -2.39 -0.02 0.63 16 34 H 0.05 0.91 8.14 -2.38 -0.02 0.89 16 35 H 0.06 0.81 8.01 -2.39 -0.02 0.79 16 36 H 0.11 1.32 8.14 -2.38 -0.02 1.30 16 37 H 0.12 0.70 7.77 -2.39 -0.02 0.68 16 38 H 0.02 0.83 8.14 -2.38 -0.02 0.81 16 39 H 0.08 3.31 6.34 -2.39 -0.02 3.29 16 40 H 0.09 2.37 6.56 -2.39 -0.02 2.35 16 41 H 0.04 1.84 3.27 -2.39 -0.01 1.83 16 42 H 0.05 2.22 6.16 -2.39 -0.01 2.20 16 43 H 0.05 2.45 8.14 -2.39 -0.02 2.43 16 44 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 45 H 0.14 1.11 7.94 -2.39 -0.02 1.09 16 46 H 0.10 1.83 6.44 -2.39 -0.02 1.82 16 47 H 0.13 0.42 8.14 -2.39 -0.02 0.40 16 48 H 0.09 0.94 8.04 -2.39 -0.02 0.92 16 49 H 0.10 1.39 8.14 -2.39 -0.02 1.38 16 50 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 51 H 0.07 2.44 6.40 -2.39 -0.02 2.42 16 52 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -81.44 408.63 5.12 -76.32 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: 0.83 Total: 10.35 kcal Atomic # 6 Polarization: -9.86 SS G_CDS: 8.99 Total: -0.87 kcal Atomic # 7 Polarization: -116.00 SS G_CDS: -4.67 Total: -120.67 kcal Atomic # 8 Polarization: -12.32 SS G_CDS: -1.69 Total: -14.01 kcal Atomic # 14 Polarization: 47.21 SS G_CDS: 1.67 Total: 48.88 kcal Total: -81.44 5.12 -76.32 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335454716.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.426 kcal (2) G-P(sol) polarization free energy of solvation -81.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.321 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds