Wall clock time and date at job start Wed Apr 1 2020 05:42:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50707 * 119.99935 * 2 1 4 4 N 1.46501 * 109.47076 * 124.99977 * 3 2 1 5 5 C 1.36736 * 127.13584 * 273.02546 * 4 3 2 6 6 C 1.50698 * 126.34831 * 359.96817 * 5 4 3 7 7 H 1.08993 * 110.43335 * 1.36632 * 6 5 4 8 8 C 1.54877 * 110.48266 * 238.83058 * 6 5 4 9 9 C 1.54686 * 102.82713 * 203.26903 * 8 6 5 10 10 H 1.08993 * 114.99413 * 267.97198 * 9 8 6 11 11 C 1.53516 * 113.40473 * 131.24373 * 9 8 6 12 12 C 1.53632 * 87.59425 * 279.72973 * 11 9 8 13 13 H 1.08997 * 113.52578 * 221.09289 * 12 11 9 14 14 O 1.42899 * 113.52140 * 90.54088 * 12 11 9 15 15 C 1.53820 * 87.63596 * 335.84951 * 12 11 9 16 16 H 1.08995 * 115.62549 * 266.32123 * 15 12 11 17 17 C 1.53910 * 112.98973 * 130.58118 * 15 12 11 18 18 N 1.30297 * 107.30322 * 180.22662 * 5 4 3 19 19 N 1.28526 * 110.05495 * 359.77327 * 18 5 4 20 20 C 1.31216 * 109.86134 * 0.02562 * 19 18 5 21 21 N 1.38581 * 126.47332 * 179.97438 * 20 19 18 22 22 C 1.46891 * 111.00174 * 302.75610 * 21 20 19 23 23 C 1.46901 * 110.99826 * 66.71591 * 21 20 19 24 24 H 1.08998 * 109.47265 * 54.99413 * 23 21 20 25 25 C 1.53002 * 109.46798 * 294.99477 * 23 21 20 26 26 C 1.50699 * 109.47062 * 175.00138 * 23 21 20 27 27 H 1.08003 * 119.99738 * 359.97438 * 26 23 21 28 28 C 1.37879 * 120.00233 * 179.97438 * 26 23 21 29 29 N 1.31517 * 119.99802 * 359.97438 * 28 26 23 30 30 Si 1.86801 * 120.00017 * 179.97438 * 28 26 23 31 31 H 1.48498 * 109.47185 * 359.97438 * 30 28 26 32 32 H 1.48500 * 109.46880 * 119.99914 * 30 28 26 33 33 H 1.48503 * 109.46912 * 239.99742 * 30 28 26 34 34 H 1.08008 * 119.99746 * 0.02562 * 1 2 3 35 35 H 1.07996 * 120.00366 * 180.02562 * 1 2 3 36 36 H 1.07995 * 120.00037 * 179.97438 * 2 1 3 37 37 H 1.08991 * 109.47256 * 4.99647 * 3 2 1 38 38 H 1.09005 * 109.47048 * 244.99697 * 3 2 1 39 39 H 1.09000 * 110.74327 * 321.60557 * 8 6 5 40 40 H 1.09000 * 110.74040 * 84.75758 * 8 6 5 41 41 H 1.08996 * 113.53601 * 34.41386 * 11 9 8 42 42 H 1.09006 * 113.52758 * 165.05482 * 11 9 8 43 43 H 0.96700 * 114.00178 * 79.50352 * 14 12 11 44 44 H 1.08999 * 110.02159 * 146.80573 * 17 15 12 45 45 H 1.09012 * 110.01918 * 25.41447 * 17 15 12 46 46 H 1.09002 * 109.47810 * 177.79900 * 22 21 20 47 47 H 1.09004 * 109.47408 * 297.79850 * 22 21 20 48 48 H 1.09001 * 109.47245 * 57.79982 * 22 21 20 49 49 H 1.09001 * 109.47234 * 300.00532 * 25 23 21 50 50 H 1.08992 * 109.47064 * 180.02562 * 25 23 21 51 51 H 1.09003 * 109.47042 * 60.00558 * 25 23 21 52 52 H 0.96991 * 119.99902 * 179.97438 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9937 1.3320 1.1314 5 6 2.7281 1.7404 2.4090 6 6 1.4094 2.2546 2.9264 7 1 0.6587 2.2394 2.1363 8 6 1.5708 3.6869 3.4931 9 6 0.3809 3.8040 4.4745 10 1 -0.5295 4.2234 4.0465 11 6 0.7811 4.3374 5.8573 12 6 1.2620 2.9177 6.1942 13 1 1.0072 2.6006 7.2054 14 8 2.6353 2.6893 5.8719 15 6 0.2860 2.4017 5.1231 16 1 -0.6988 2.1070 5.4855 17 6 0.9413 1.4196 4.1358 18 7 3.8280 1.6079 3.0949 19 7 4.7620 1.1426 2.3445 20 6 4.3044 0.9523 1.1295 21 7 5.0187 0.4627 0.0475 22 6 6.2012 1.2917 -0.2212 23 6 5.3966 -0.9412 0.2580 24 1 4.5045 -1.5293 0.4734 25 6 6.3673 -1.0367 1.4369 26 6 6.0618 -1.4741 -0.9848 27 1 6.1905 -0.8340 -1.8451 28 6 6.5061 -2.7787 -1.0236 29 7 6.3498 -3.5580 0.0243 30 14 7.3300 -3.4394 -2.5644 31 1 7.3834 -2.3708 -3.5942 32 1 8.7094 -3.8817 -2.2372 33 1 6.5517 -4.5912 -3.0868 34 1 -0.5400 0.9354 -0.0004 35 1 -0.5400 -0.9352 0.0004 36 1 1.8499 -0.9353 0.0004 37 1 1.3586 2.1316 0.0895 38 1 2.6213 1.4026 -0.9314 39 1 2.5187 3.7883 4.0218 40 1 1.4930 4.4278 2.6975 41 1 1.5850 5.0728 5.8241 42 1 -0.0666 4.6641 6.4597 43 1 3.2563 3.0439 6.5229 44 1 0.2152 0.6727 3.8150 45 1 1.7957 0.9323 4.6058 46 1 6.7647 0.8631 -1.0501 47 1 5.8852 2.3021 -0.4808 48 1 6.8312 1.3250 0.6676 49 1 7.2593 -0.4485 1.2216 50 1 6.6480 -2.0782 1.5928 51 1 5.8861 -0.6513 2.3358 52 1 6.6619 -4.4759 -0.0031 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001339195704.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:42:46 Heat of formation + Delta-G solvation = 95.061103 kcal Electronic energy + Delta-G solvation = -32387.264666 eV Core-core repulsion = 28390.258707 eV Total energy + Delta-G solvation = -3997.005959 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.40726 -40.64691 -37.14904 -35.92782 -35.44616 -33.22569 -32.74322 -32.24803 -29.21687 -28.90406 -28.24524 -26.61996 -25.33652 -25.13378 -24.70907 -23.30033 -21.82663 -21.38268 -20.34527 -19.41776 -19.06421 -18.78884 -17.39212 -16.72824 -16.26856 -16.00469 -15.63637 -15.38406 -15.15157 -14.61401 -14.52751 -14.18006 -14.02312 -13.67732 -13.38312 -13.17354 -12.90877 -12.62094 -12.36677 -12.22487 -12.08433 -11.49619 -11.43412 -11.37030 -11.32330 -11.24449 -11.17878 -11.03866 -10.90965 -10.85743 -10.70977 -10.50490 -10.41575 -10.12709 -10.08036 -10.06232 -9.76081 -9.59327 -9.51423 -9.46410 -8.81640 -8.42238 -8.20948 -7.62377 -6.04098 -4.10107 2.03455 2.36139 3.00790 3.28056 3.36008 3.39491 3.50508 3.98946 4.22335 4.34537 4.37824 4.56821 4.66678 4.72675 4.84228 4.86051 4.97362 5.02040 5.19738 5.25675 5.27837 5.34259 5.36100 5.46425 5.49202 5.56916 5.66392 5.72608 5.79740 5.86446 5.89907 5.94240 6.00131 6.10337 6.24866 6.32406 6.43716 6.45249 6.53884 6.59451 6.63925 6.68699 6.70638 6.92340 7.15791 7.19194 7.26990 7.61687 7.72442 7.74317 7.81337 7.99490 8.31814 8.54643 8.93583 9.46923 9.54486 11.02551 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017507 B = 0.003029 C = 0.002845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.014736 B = 9241.372559 C = 9837.993858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.161 4.161 3 C 0.143 3.857 4 N -0.470 5.470 5 C 0.168 3.832 6 C 0.013 3.987 7 H 0.077 0.923 8 C -0.097 4.097 9 C -0.110 4.110 10 H 0.084 0.916 11 C -0.166 4.166 12 C 0.086 3.914 13 H 0.060 0.940 14 O -0.521 6.521 15 C -0.107 4.107 16 H 0.103 0.897 17 C -0.098 4.098 18 N -0.270 5.270 19 N -0.316 5.316 20 C 0.371 3.629 21 N -0.471 5.471 22 C 0.046 3.954 23 C 0.227 3.773 24 H 0.034 0.966 25 C -0.174 4.174 26 C -0.506 4.506 27 H 0.065 0.935 28 C 0.062 3.938 29 N -0.888 5.888 30 Si 0.899 3.101 31 H -0.272 1.272 32 H -0.284 1.284 33 H -0.285 1.285 34 H 0.096 0.904 35 H 0.103 0.897 36 H 0.121 0.879 37 H 0.087 0.913 38 H 0.111 0.889 39 H 0.102 0.898 40 H 0.058 0.942 41 H 0.072 0.928 42 H 0.082 0.918 43 H 0.374 0.626 44 H 0.058 0.942 45 H 0.092 0.908 46 H 0.088 0.912 47 H 0.041 0.959 48 H 0.039 0.961 49 H 0.030 0.970 50 H 0.084 0.916 51 H 0.038 0.962 52 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.302 14.648 7.721 22.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.179 4.179 3 C 0.020 3.980 4 N -0.163 5.163 5 C -0.099 4.099 6 C -0.008 4.008 7 H 0.096 0.904 8 C -0.135 4.135 9 C -0.128 4.128 10 H 0.102 0.898 11 C -0.203 4.203 12 C 0.026 3.974 13 H 0.078 0.922 14 O -0.325 6.325 15 C -0.125 4.125 16 H 0.121 0.879 17 C -0.136 4.136 18 N -0.110 5.110 19 N -0.159 5.159 20 C 0.015 3.985 21 N -0.197 5.197 22 C -0.101 4.101 23 C 0.123 3.877 24 H 0.052 0.948 25 C -0.233 4.233 26 C -0.544 4.544 27 H 0.084 0.916 28 C -0.140 4.140 29 N -0.527 5.527 30 Si 0.727 3.273 31 H -0.197 1.197 32 H -0.210 1.210 33 H -0.211 1.211 34 H 0.114 0.886 35 H 0.121 0.879 36 H 0.139 0.861 37 H 0.105 0.895 38 H 0.129 0.871 39 H 0.120 0.880 40 H 0.077 0.923 41 H 0.091 0.909 42 H 0.101 0.899 43 H 0.221 0.779 44 H 0.077 0.923 45 H 0.110 0.890 46 H 0.107 0.893 47 H 0.060 0.940 48 H 0.058 0.942 49 H 0.049 0.951 50 H 0.103 0.897 51 H 0.057 0.943 52 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -14.831 14.213 7.974 22.035 hybrid contribution 0.145 -0.438 -0.932 1.040 sum -14.686 13.776 7.041 21.331 Atomic orbital electron populations 1.23819 0.95424 1.01995 1.00489 1.23244 0.96132 0.98881 0.99683 1.20811 0.91611 0.96277 0.89306 1.46382 1.10485 1.49174 1.10252 1.24366 0.98974 1.05118 0.81408 1.20148 0.88334 0.95349 0.96978 0.90425 1.22457 0.99611 0.93926 0.97545 1.23173 0.98535 0.96343 0.94778 0.89803 1.23493 1.01526 0.98012 0.97309 1.22564 0.83946 0.94359 0.96510 0.92242 1.86762 1.13789 1.81259 1.50701 1.23407 0.97706 0.95340 0.96055 0.87861 1.21915 1.00947 0.96912 0.93872 1.74008 0.96303 1.15379 1.25291 1.74791 1.23073 1.18215 0.99842 1.22893 0.83556 0.99413 0.92632 1.59368 1.23453 1.06376 1.30547 1.22223 0.91176 0.94794 1.01942 1.19346 0.94738 0.78540 0.95115 0.94786 1.22455 0.99346 1.03542 0.97963 1.21060 1.38170 0.96541 0.98678 0.91641 1.24910 0.95959 0.96760 0.96405 1.69927 1.46884 1.07118 1.28746 0.86430 0.79056 0.78877 0.82973 1.19681 1.21028 1.21086 0.88590 0.87907 0.86090 0.89477 0.87138 0.88011 0.92332 0.90909 0.89947 0.77932 0.92338 0.88964 0.89342 0.93971 0.94188 0.95122 0.89733 0.94338 0.92915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.95 14.32 29.02 0.42 -1.54 16 2 C -0.16 -2.24 9.85 -36.02 -0.35 -2.60 16 3 C 0.14 2.01 6.27 -5.19 -0.03 1.98 16 4 N -0.47 -8.36 2.79 -115.36 -0.32 -8.68 16 5 C 0.17 2.90 6.59 -154.02 -1.01 1.88 16 6 C 0.01 0.17 3.26 -90.14 -0.29 -0.13 16 7 H 0.08 0.87 7.11 -51.93 -0.37 0.50 16 8 C -0.10 -1.11 5.51 -24.85 -0.14 -1.25 16 9 C -0.11 -0.98 4.96 -88.52 -0.44 -1.42 16 10 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 11 C -0.17 -1.29 7.42 -26.14 -0.19 -1.49 16 12 C 0.09 0.78 5.13 -25.98 -0.13 0.65 16 13 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 14 O -0.52 -5.90 9.95 -35.23 -0.35 -6.25 16 15 C -0.11 -1.01 4.91 -88.77 -0.44 -1.44 16 16 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 17 C -0.10 -1.22 5.64 -25.61 -0.14 -1.36 16 18 N -0.27 -5.51 11.85 32.99 0.39 -5.12 16 19 N -0.32 -7.18 9.67 30.32 0.29 -6.88 16 20 C 0.37 7.92 6.25 -318.87 -1.99 5.93 16 21 N -0.47 -10.48 4.77 -176.08 -0.84 -11.32 16 22 C 0.05 0.95 8.70 60.06 0.52 1.47 16 23 C 0.23 5.85 2.32 -68.86 -0.16 5.69 16 24 H 0.03 0.98 8.11 -51.93 -0.42 0.56 16 25 C -0.17 -4.55 8.19 37.16 0.30 -4.24 16 26 C -0.51 -13.57 7.85 -34.44 -0.27 -13.84 16 27 H 0.07 1.72 6.78 -52.48 -0.36 1.37 16 28 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 29 N -0.89 -25.38 11.32 55.43 0.63 -24.76 16 30 Si 0.90 21.04 29.54 -169.99 -5.02 16.02 16 31 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 32 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 33 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 34 H 0.10 0.84 7.84 -52.48 -0.41 0.42 16 35 H 0.10 1.04 8.06 -52.49 -0.42 0.61 16 36 H 0.12 2.06 8.06 -52.49 -0.42 1.63 16 37 H 0.09 0.95 7.07 -51.93 -0.37 0.58 16 38 H 0.11 1.60 8.14 -51.93 -0.42 1.17 16 39 H 0.10 1.38 5.98 -51.93 -0.31 1.07 16 40 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.37 2.93 9.12 45.56 0.42 3.34 16 44 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 45 H 0.09 1.44 6.63 -51.92 -0.34 1.10 16 46 H 0.09 1.82 6.36 -51.93 -0.33 1.49 16 47 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 48 H 0.04 0.85 6.50 -51.93 -0.34 0.52 16 49 H 0.03 0.77 6.53 -51.93 -0.34 0.43 16 50 H 0.08 2.40 6.07 -51.93 -0.32 2.09 16 51 H 0.04 1.00 5.80 -51.93 -0.30 0.70 16 52 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 401.29 15.07 6.05 6.05 Total: -1.00 -32.16 401.29 -11.20 -43.36 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: -7.57 Total: 7.71 kcal Atomic # 6 Polarization: -5.67 SS G_CDS: -4.46 Total: -10.13 kcal Atomic # 7 Polarization: -56.91 SS G_CDS: 0.15 Total: -56.76 kcal Atomic # 8 Polarization: -5.90 SS G_CDS: -0.35 Total: -6.25 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -32.16 -11.20 -43.36 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339195704.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.424 kcal (2) G-P(sol) polarization free energy of solvation -32.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.363 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds