Wall clock time and date at job start Wed Apr 1 2020 05:42:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50707 * 119.99935 * 2 1 4 4 N 1.46501 * 109.47076 * 124.99977 * 3 2 1 5 5 C 1.36736 * 127.13584 * 273.02546 * 4 3 2 6 6 C 1.50698 * 126.34831 * 359.96817 * 5 4 3 7 7 H 1.08993 * 110.43335 * 1.36632 * 6 5 4 8 8 C 1.54877 * 110.48266 * 238.83058 * 6 5 4 9 9 C 1.54686 * 102.82713 * 203.26903 * 8 6 5 10 10 H 1.08993 * 114.99413 * 267.97198 * 9 8 6 11 11 C 1.53516 * 113.40473 * 131.24373 * 9 8 6 12 12 C 1.53632 * 87.59425 * 279.72973 * 11 9 8 13 13 H 1.08997 * 113.52578 * 221.09289 * 12 11 9 14 14 O 1.42899 * 113.52140 * 90.54088 * 12 11 9 15 15 C 1.53820 * 87.63596 * 335.84951 * 12 11 9 16 16 H 1.08995 * 115.62549 * 266.32123 * 15 12 11 17 17 C 1.53910 * 112.98973 * 130.58118 * 15 12 11 18 18 N 1.30297 * 107.30322 * 180.22662 * 5 4 3 19 19 N 1.28526 * 110.05495 * 359.77327 * 18 5 4 20 20 C 1.31216 * 109.86134 * 0.02562 * 19 18 5 21 21 N 1.38581 * 126.47332 * 179.97438 * 20 19 18 22 22 C 1.46891 * 111.00174 * 302.75610 * 21 20 19 23 23 C 1.46901 * 110.99826 * 66.71591 * 21 20 19 24 24 H 1.08998 * 109.47265 * 54.99413 * 23 21 20 25 25 C 1.53002 * 109.46798 * 294.99477 * 23 21 20 26 26 C 1.50699 * 109.47062 * 175.00138 * 23 21 20 27 27 H 1.08003 * 119.99738 * 359.97438 * 26 23 21 28 28 C 1.37879 * 120.00233 * 179.97438 * 26 23 21 29 29 N 1.31517 * 119.99802 * 359.97438 * 28 26 23 30 30 Si 1.86801 * 120.00017 * 179.97438 * 28 26 23 31 31 H 1.48498 * 109.47185 * 359.97438 * 30 28 26 32 32 H 1.48500 * 109.46880 * 119.99914 * 30 28 26 33 33 H 1.48503 * 109.46912 * 239.99742 * 30 28 26 34 34 H 1.08008 * 119.99746 * 0.02562 * 1 2 3 35 35 H 1.07996 * 120.00366 * 180.02562 * 1 2 3 36 36 H 1.07995 * 120.00037 * 179.97438 * 2 1 3 37 37 H 1.08991 * 109.47256 * 4.99647 * 3 2 1 38 38 H 1.09005 * 109.47048 * 244.99697 * 3 2 1 39 39 H 1.09000 * 110.74327 * 321.60557 * 8 6 5 40 40 H 1.09000 * 110.74040 * 84.75758 * 8 6 5 41 41 H 1.08996 * 113.53601 * 34.41386 * 11 9 8 42 42 H 1.09006 * 113.52758 * 165.05482 * 11 9 8 43 43 H 0.96700 * 114.00178 * 79.50352 * 14 12 11 44 44 H 1.08999 * 110.02159 * 146.80573 * 17 15 12 45 45 H 1.09012 * 110.01918 * 25.41447 * 17 15 12 46 46 H 1.09002 * 109.47810 * 177.79900 * 22 21 20 47 47 H 1.09004 * 109.47408 * 297.79850 * 22 21 20 48 48 H 1.09001 * 109.47245 * 57.79982 * 22 21 20 49 49 H 1.09001 * 109.47234 * 300.00532 * 25 23 21 50 50 H 1.08992 * 109.47064 * 180.02562 * 25 23 21 51 51 H 1.09003 * 109.47042 * 60.00558 * 25 23 21 52 52 H 0.96991 * 119.99902 * 179.97438 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9937 1.3320 1.1314 5 6 2.7281 1.7404 2.4090 6 6 1.4094 2.2546 2.9264 7 1 0.6587 2.2394 2.1363 8 6 1.5708 3.6869 3.4931 9 6 0.3809 3.8040 4.4745 10 1 -0.5295 4.2234 4.0465 11 6 0.7811 4.3374 5.8573 12 6 1.2620 2.9177 6.1942 13 1 1.0072 2.6006 7.2054 14 8 2.6353 2.6893 5.8719 15 6 0.2860 2.4017 5.1231 16 1 -0.6988 2.1070 5.4855 17 6 0.9413 1.4196 4.1358 18 7 3.8280 1.6079 3.0949 19 7 4.7620 1.1426 2.3445 20 6 4.3044 0.9523 1.1295 21 7 5.0187 0.4627 0.0475 22 6 6.2012 1.2917 -0.2212 23 6 5.3966 -0.9412 0.2580 24 1 4.5045 -1.5293 0.4734 25 6 6.3673 -1.0367 1.4369 26 6 6.0618 -1.4741 -0.9848 27 1 6.1905 -0.8340 -1.8451 28 6 6.5061 -2.7787 -1.0236 29 7 6.3498 -3.5580 0.0243 30 14 7.3300 -3.4394 -2.5644 31 1 7.3834 -2.3708 -3.5942 32 1 8.7094 -3.8817 -2.2372 33 1 6.5517 -4.5912 -3.0868 34 1 -0.5400 0.9354 -0.0004 35 1 -0.5400 -0.9352 0.0004 36 1 1.8499 -0.9353 0.0004 37 1 1.3586 2.1316 0.0895 38 1 2.6213 1.4026 -0.9314 39 1 2.5187 3.7883 4.0218 40 1 1.4930 4.4278 2.6975 41 1 1.5850 5.0728 5.8241 42 1 -0.0666 4.6641 6.4597 43 1 3.2563 3.0439 6.5229 44 1 0.2152 0.6727 3.8150 45 1 1.7957 0.9323 4.6058 46 1 6.7647 0.8631 -1.0501 47 1 5.8852 2.3021 -0.4808 48 1 6.8312 1.3250 0.6676 49 1 7.2593 -0.4485 1.2216 50 1 6.6480 -2.0782 1.5928 51 1 5.8861 -0.6513 2.3358 52 1 6.6619 -4.4759 -0.0031 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001339195704.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:42:44 Heat of formation + Delta-G solvation = 76.313050 kcal Electronic energy + Delta-G solvation = -32388.077643 eV Core-core repulsion = 28390.258707 eV Total energy + Delta-G solvation = -3997.818936 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -43.88995 -41.43054 -38.97249 -37.13663 -36.33622 -34.89633 -34.02836 -33.52377 -30.99293 -30.01960 -29.65916 -27.84095 -27.30750 -26.84243 -25.82333 -24.03026 -23.31097 -22.76669 -21.68352 -20.59595 -20.54125 -19.52110 -18.45074 -18.23650 -17.80906 -17.46416 -16.93181 -16.67812 -16.35890 -16.26997 -15.74887 -15.41855 -15.09874 -14.96054 -14.78185 -14.48886 -14.23176 -13.88769 -13.52237 -13.48347 -13.23380 -13.12464 -12.95988 -12.82232 -12.73354 -12.63228 -12.47928 -12.38361 -12.28870 -12.14853 -12.09719 -12.05052 -11.98043 -11.62576 -11.47829 -11.23894 -11.03229 -10.83088 -10.82719 -10.54992 -10.51398 -10.21748 -9.77231 -9.43735 -8.15159 -6.29107 0.80095 1.05220 1.42526 1.43666 1.56137 1.70930 1.96542 2.41194 3.10488 3.15612 3.28897 3.36511 3.44334 3.69943 3.82070 3.83341 3.93240 4.05559 4.11547 4.25039 4.31109 4.38318 4.48092 4.50512 4.55351 4.59472 4.63241 4.65421 4.73706 4.75506 4.89156 4.91001 4.96537 4.99214 5.01793 5.05800 5.09671 5.11542 5.14937 5.18035 5.30379 5.42614 5.44093 5.56302 5.60811 5.62815 5.64447 5.68406 5.73015 5.90504 6.05940 6.20787 6.68190 6.81128 7.10450 7.39948 7.92971 8.92047 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017507 B = 0.003029 C = 0.002845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.014736 B = 9241.372559 C = 9837.993858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.201 4.201 3 C 0.141 3.859 4 N -0.466 5.466 5 C 0.189 3.811 6 C 0.012 3.988 7 H 0.106 0.894 8 C -0.097 4.097 9 C -0.101 4.101 10 H 0.109 0.891 11 C -0.154 4.154 12 C 0.075 3.925 13 H 0.072 0.928 14 O -0.550 6.550 15 C -0.105 4.105 16 H 0.129 0.871 17 C -0.098 4.098 18 N -0.303 5.303 19 N -0.351 5.351 20 C 0.345 3.655 21 N -0.466 5.466 22 C 0.052 3.948 23 C 0.241 3.759 24 H -0.008 1.008 25 C -0.155 4.155 26 C -0.516 4.516 27 H 0.071 0.929 28 C 0.012 3.988 29 N -0.922 5.922 30 Si 0.969 3.031 31 H -0.260 1.260 32 H -0.282 1.282 33 H -0.282 1.282 34 H 0.134 0.866 35 H 0.111 0.889 36 H 0.074 0.926 37 H 0.131 0.869 38 H 0.101 0.899 39 H 0.075 0.925 40 H 0.069 0.931 41 H 0.067 0.933 42 H 0.106 0.894 43 H 0.383 0.617 44 H 0.066 0.934 45 H 0.051 0.949 46 H 0.086 0.914 47 H 0.068 0.932 48 H 0.024 0.976 49 H 0.031 0.969 50 H 0.058 0.942 51 H 0.031 0.969 52 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.482 16.800 6.862 25.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.220 4.220 3 C 0.020 3.980 4 N -0.159 5.159 5 C -0.079 4.079 6 C -0.009 4.009 7 H 0.124 0.876 8 C -0.135 4.135 9 C -0.119 4.119 10 H 0.127 0.873 11 C -0.191 4.191 12 C 0.015 3.985 13 H 0.089 0.911 14 O -0.356 6.356 15 C -0.123 4.123 16 H 0.147 0.853 17 C -0.137 4.137 18 N -0.142 5.142 19 N -0.194 5.194 20 C -0.012 4.012 21 N -0.192 5.192 22 C -0.096 4.096 23 C 0.135 3.865 24 H 0.010 0.990 25 C -0.214 4.214 26 C -0.554 4.554 27 H 0.089 0.911 28 C -0.187 4.187 29 N -0.561 5.561 30 Si 0.794 3.206 31 H -0.184 1.184 32 H -0.208 1.208 33 H -0.208 1.208 34 H 0.152 0.848 35 H 0.129 0.871 36 H 0.093 0.907 37 H 0.148 0.852 38 H 0.119 0.881 39 H 0.093 0.907 40 H 0.088 0.912 41 H 0.085 0.915 42 H 0.125 0.875 43 H 0.231 0.769 44 H 0.084 0.916 45 H 0.070 0.930 46 H 0.104 0.896 47 H 0.087 0.913 48 H 0.043 0.957 49 H 0.050 0.950 50 H 0.077 0.923 51 H 0.049 0.951 52 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -18.028 16.394 7.110 25.384 hybrid contribution 1.004 -1.101 -0.576 1.597 sum -17.025 15.293 6.534 23.800 Atomic orbital electron populations 1.24143 0.93962 1.04166 0.95054 1.22922 0.97233 0.97067 1.04760 1.21109 0.91517 0.97799 0.87588 1.46622 1.09664 1.48123 1.11471 1.25299 0.99673 1.02252 0.80664 1.20495 0.86339 0.96213 0.97880 0.87613 1.22415 0.99796 0.92950 0.98332 1.23141 0.98124 0.96034 0.94582 0.87255 1.23453 1.02024 0.96837 0.96817 1.22781 0.82921 0.95617 0.97132 0.91063 1.86742 1.15327 1.81805 1.51741 1.23533 0.98592 0.94634 0.95519 0.85275 1.21861 0.99813 0.97714 0.94276 1.73937 0.97291 1.17164 1.25814 1.74645 1.24932 1.19113 1.00739 1.22816 0.85102 1.01055 0.92221 1.59233 1.23981 1.04877 1.31074 1.22211 0.90467 0.95844 1.01039 1.18957 0.92489 0.80439 0.94606 0.99030 1.22240 0.99419 1.01594 0.98148 1.21303 1.38151 0.96975 0.99008 0.91092 1.25788 0.96456 0.96980 0.99495 1.70077 1.47770 1.07418 1.30875 0.85337 0.77749 0.78311 0.79216 1.18364 1.20778 1.20754 0.84804 0.87065 0.90742 0.85165 0.88059 0.90661 0.91191 0.91473 0.87540 0.76866 0.91563 0.93008 0.89583 0.91293 0.95688 0.94982 0.92281 0.95060 0.92868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 14.32 67.78 0.97 -1.55 16 2 C -0.20 -5.53 9.85 25.65 0.25 -5.27 16 3 C 0.14 3.81 6.27 85.64 0.54 4.34 16 4 N -0.47 -16.79 2.79 -518.90 -1.45 -18.24 16 5 C 0.19 6.53 6.59 137.64 0.91 7.44 16 6 C 0.01 0.28 3.26 -10.48 -0.03 0.24 16 7 H 0.11 1.92 7.11 -2.39 -0.02 1.91 16 8 C -0.10 -1.99 5.51 31.81 0.18 -1.82 16 9 C -0.10 -1.42 4.96 -9.43 -0.05 -1.46 16 10 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 11 C -0.15 -1.92 7.42 30.98 0.23 -1.69 16 12 C 0.07 1.23 5.13 31.08 0.16 1.39 16 13 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 14 O -0.55 -12.73 9.95 -148.98 -1.48 -14.21 16 15 C -0.10 -1.67 4.91 -9.60 -0.05 -1.72 16 16 H 0.13 1.42 8.14 -2.39 -0.02 1.40 16 17 C -0.10 -2.30 5.64 31.32 0.18 -2.12 16 18 N -0.30 -12.92 11.85 -49.54 -0.59 -13.51 16 19 N -0.35 -16.80 9.67 -58.00 -0.56 -17.36 16 20 C 0.35 15.40 6.25 260.11 1.63 17.02 16 21 N -0.47 -21.62 4.77 -711.01 -3.39 -25.01 16 22 C 0.05 2.17 8.70 127.69 1.11 3.28 16 23 C 0.24 13.12 2.32 44.17 0.10 13.22 16 24 H -0.01 -0.51 8.11 -2.39 -0.02 -0.53 16 25 C -0.15 -8.60 8.19 71.98 0.59 -8.01 16 26 C -0.52 -28.52 7.85 25.60 0.20 -28.31 16 27 H 0.07 3.78 6.78 -2.91 -0.02 3.76 16 28 C 0.01 0.65 5.30 84.65 0.45 1.10 16 29 N -0.92 -54.70 11.32 21.45 0.24 -54.46 16 30 Si 0.97 43.65 29.54 68.60 2.03 45.67 16 31 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 32 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 33 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 34 H 0.13 1.53 7.84 -2.91 -0.02 1.51 16 35 H 0.11 1.91 8.06 -2.91 -0.02 1.89 16 36 H 0.07 2.74 8.06 -2.91 -0.02 2.72 16 37 H 0.13 2.33 7.07 -2.39 -0.02 2.31 16 38 H 0.10 2.89 8.14 -2.38 -0.02 2.87 16 39 H 0.07 2.01 5.98 -2.39 -0.01 2.00 16 40 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.11 0.87 8.14 -2.38 -0.02 0.85 16 43 H 0.38 6.41 9.12 -74.06 -0.68 5.73 16 44 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 45 H 0.05 1.66 6.63 -2.38 -0.02 1.65 16 46 H 0.09 3.59 6.36 -2.39 -0.02 3.58 16 47 H 0.07 2.48 8.14 -2.38 -0.02 2.46 16 48 H 0.02 1.10 6.50 -2.39 -0.02 1.08 16 49 H 0.03 1.70 6.53 -2.39 -0.02 1.69 16 50 H 0.06 3.56 6.07 -2.39 -0.01 3.54 16 51 H 0.03 1.74 5.80 -2.39 -0.01 1.73 16 52 H 0.26 14.72 8.31 -92.72 -0.77 13.95 16 Total: -1.00 -75.79 401.29 2.41 -73.38 By element: Atomic # 1 Polarization: 27.41 SS G_CDS: 0.25 Total: 27.67 kcal Atomic # 6 Polarization: -11.28 SS G_CDS: 7.36 Total: -3.92 kcal Atomic # 7 Polarization: -122.83 SS G_CDS: -5.75 Total: -128.58 kcal Atomic # 8 Polarization: -12.73 SS G_CDS: -1.48 Total: -14.21 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.67 kcal Total: -75.79 2.41 -73.38 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339195704.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.693 kcal (2) G-P(sol) polarization free energy of solvation -75.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds