Wall clock time and date at job start Wed Apr 1 2020 04:50:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 C 1.53124 * 109.52129 * 119.68687 * 3 2 1 5 5 C 1.53035 * 109.27887 * 177.56026 * 4 3 2 6 6 N 1.46848 * 109.52111 * 300.82085 * 5 4 3 7 7 C 1.38587 * 110.99799 * 185.84088 * 6 5 4 8 8 N 1.31221 * 126.46859 * 297.47785 * 7 6 5 9 9 N 1.28531 * 109.85823 * 179.74017 * 8 7 6 10 10 C 1.30301 * 110.05107 * 0.02562 * 9 8 7 11 11 C 1.50697 * 126.34650 * 179.97438 * 10 9 8 12 12 H 1.09001 * 109.47528 * 180.02562 * 11 10 9 13 13 C 1.53001 * 109.47319 * 60.02065 * 11 10 9 14 14 C 1.52997 * 109.47014 * 300.02178 * 11 10 9 15 15 C 1.50704 * 109.47086 * 184.99901 * 14 11 10 16 16 H 1.07998 * 120.00381 * 359.97438 * 15 14 11 17 17 C 1.37880 * 119.99610 * 179.97438 * 15 14 11 18 18 N 1.31512 * 120.00560 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99759 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47149 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47561 * 119.99573 * 19 17 15 22 22 H 1.48501 * 109.47027 * 240.00142 * 19 17 15 23 23 N 1.36451 * 126.47570 * 117.16523 * 7 6 5 24 24 C 1.46503 * 127.13390 * 0.24160 * 23 7 6 25 25 C 1.53005 * 109.47028 * 95.16952 * 24 23 7 26 26 O 1.42900 * 109.46915 * 184.87174 * 25 24 23 27 27 C 1.42895 * 113.99991 * 179.97438 * 26 25 24 28 28 C 1.46846 * 111.19976 * 61.74301 * 6 5 4 29 29 C 1.53035 * 109.52331 * 298.25634 * 28 6 5 30 30 H 4.44834 * 5.63034 * 180.02562 * 4 1 2 31 31 H 1.09001 * 109.57644 * 359.52766 * 3 2 1 32 32 H 1.09000 * 109.50322 * 57.61729 * 4 3 2 33 33 H 1.09001 * 109.50254 * 297.49925 * 4 3 2 34 34 H 1.09002 * 109.46395 * 180.80508 * 5 4 3 35 35 H 1.09002 * 109.46307 * 60.83439 * 5 4 3 36 36 H 1.09002 * 109.47251 * 59.99925 * 13 11 10 37 37 H 1.08998 * 109.47241 * 180.02562 * 13 11 10 38 38 H 1.09006 * 109.47096 * 300.00301 * 13 11 10 39 39 H 1.09005 * 109.47099 * 305.00107 * 14 11 10 40 40 H 1.09002 * 109.47725 * 64.99984 * 14 11 10 41 41 H 0.96997 * 120.00496 * 180.02562 * 18 17 15 42 42 H 1.09004 * 109.46792 * 215.16621 * 24 23 7 43 43 H 1.08999 * 109.47044 * 335.16947 * 24 23 7 44 44 H 1.09000 * 109.47295 * 304.86936 * 25 24 23 45 45 H 1.08996 * 109.47007 * 64.86809 * 25 24 23 46 46 H 1.08994 * 109.47248 * 179.97438 * 27 26 25 47 47 H 1.09002 * 109.47016 * 299.99975 * 27 26 25 48 48 H 1.08999 * 109.47276 * 60.00084 * 27 26 25 49 49 H 1.09002 * 109.46562 * 58.26989 * 28 6 5 50 50 H 1.08998 * 109.46505 * 178.24270 * 28 6 5 51 51 H 1.09005 * 109.50449 * 299.24318 * 29 28 6 52 52 H 1.08998 * 109.50755 * 179.11822 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1574 0.7157 -1.2538 5 6 4.6865 0.7668 -1.2181 6 7 5.1256 1.4807 -0.0123 7 6 6.4999 1.6595 -0.0138 8 7 7.4095 0.7138 0.0016 9 7 8.5834 1.2370 -0.0109 10 6 8.4931 2.5366 -0.0343 11 6 9.6421 3.5115 -0.0544 12 1 9.2542 4.5301 -0.0716 13 6 10.4947 3.2693 -1.3015 14 6 10.5005 3.3139 1.1965 15 6 11.5770 4.3677 1.2387 16 1 11.6427 5.1045 0.4517 17 6 12.4782 4.3913 2.2820 18 7 12.3987 3.4939 3.2400 19 14 13.8121 5.6979 2.3346 20 1 13.6865 6.5816 1.1477 21 1 13.6649 6.5061 3.5717 22 1 15.1456 5.0445 2.3258 23 7 7.1627 2.8520 -0.0376 24 6 6.5714 4.1922 -0.0616 25 6 6.4874 4.7381 1.3653 26 8 5.8084 5.9955 1.3549 27 6 5.6751 6.5946 2.6454 28 6 4.6865 0.7867 1.2051 29 6 3.1574 0.7362 1.2418 30 1 -1.0501 0.0000 0.0003 31 1 3.0117 -1.0261 0.0085 32 1 2.7599 1.7302 -1.2818 33 1 2.8321 0.1721 -2.1408 34 1 5.0532 1.2879 -2.1024 35 1 5.0836 -0.2482 -1.2040 36 1 9.8832 3.4101 -2.1928 37 1 11.3260 3.9742 -1.3158 38 1 10.8827 2.2508 -1.2842 39 1 9.8739 3.3989 2.0844 40 1 10.9602 2.3259 1.1695 41 1 13.0324 3.5106 3.9742 42 1 7.1922 4.8524 -0.6673 43 1 5.5705 4.1401 -0.4901 44 1 5.9395 4.0345 1.9919 45 1 7.4934 4.8717 1.7629 46 1 5.1498 7.5451 2.5521 47 1 5.1101 5.9293 3.2982 48 1 6.6641 6.7667 3.0700 49 1 5.0836 -0.2284 1.2078 50 1 5.0532 1.3223 2.0808 51 1 2.7599 1.7511 1.2530 52 1 2.8321 0.2074 2.1376 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001341299924.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:50:16 Heat of formation + Delta-G solvation = 78.907547 kcal Electronic energy + Delta-G solvation = -31286.634454 eV Core-core repulsion = 27288.928024 eV Total energy + Delta-G solvation = -3997.706430 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.72171 -39.40898 -38.06336 -35.66102 -35.19912 -34.54433 -32.31456 -31.68237 -31.25441 -29.76222 -28.53258 -26.97443 -26.41741 -25.19384 -24.19244 -23.53273 -23.35440 -22.15818 -21.02749 -20.16355 -19.08711 -18.42460 -17.42496 -16.80400 -16.43038 -16.15216 -16.04883 -15.57241 -15.14509 -15.07094 -14.68398 -14.54832 -14.49178 -14.09527 -13.93637 -13.78202 -13.34264 -13.23997 -12.63856 -12.48737 -12.29580 -11.89267 -11.71426 -11.66624 -11.56009 -11.54658 -11.42487 -11.40131 -11.24821 -11.08251 -10.95386 -10.78568 -10.50487 -10.36792 -10.30903 -10.27624 -10.01688 -9.87912 -9.78354 -9.65104 -9.13782 -8.82441 -8.49239 -8.39417 -6.03570 -4.07141 1.95730 2.31887 2.53709 2.57239 3.22347 3.28425 3.36653 3.39370 3.43412 3.93612 3.97488 4.41533 4.48001 4.57927 4.64130 4.78783 4.85972 4.89741 4.92066 5.10974 5.12542 5.19254 5.25269 5.25864 5.31824 5.32538 5.35685 5.39601 5.51641 5.54147 5.57929 5.58921 5.60205 5.66337 5.77008 5.80837 5.81075 6.01421 6.05577 6.06710 6.21865 6.30482 6.59496 6.66913 6.76960 6.87131 6.95657 7.02124 7.34446 7.39737 7.57671 7.74810 7.95308 8.31460 8.98530 9.11730 9.56709 11.07404 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014323 B = 0.002727 C = 0.002496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1954.468989 B =10267.063281 C =11217.017486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.175 4.175 3 C 0.016 3.984 4 C -0.105 4.105 5 C 0.068 3.932 6 N -0.461 5.461 7 C 0.320 3.680 8 N -0.308 5.308 9 N -0.284 5.284 10 C 0.222 3.778 11 C -0.005 4.005 12 H 0.073 0.927 13 C -0.126 4.126 14 C 0.040 3.960 15 C -0.520 4.520 16 H 0.060 0.940 17 C 0.059 3.941 18 N -0.890 5.890 19 Si 0.891 3.109 20 H -0.272 1.272 21 H -0.285 1.285 22 H -0.284 1.284 23 N -0.466 5.466 24 C 0.119 3.881 25 C 0.049 3.951 26 O -0.388 6.388 27 C 0.034 3.966 28 C 0.068 3.932 29 C -0.105 4.105 30 H 0.216 0.784 31 H 0.093 0.907 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.056 0.944 36 H 0.032 0.968 37 H 0.075 0.925 38 H 0.061 0.939 39 H 0.012 0.988 40 H 0.033 0.967 41 H 0.261 0.739 42 H 0.101 0.899 43 H 0.107 0.893 44 H 0.054 0.946 45 H 0.068 0.932 46 H 0.087 0.913 47 H 0.041 0.959 48 H 0.048 0.952 49 H 0.057 0.943 50 H 0.080 0.920 51 H 0.077 0.923 52 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.204 -0.936 -6.148 23.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.175 4.175 3 C -0.002 4.002 4 C -0.143 4.143 5 C -0.060 4.060 6 N -0.187 5.187 7 C -0.036 4.036 8 N -0.152 5.152 9 N -0.123 5.123 10 C -0.045 4.045 11 C -0.026 4.026 12 H 0.092 0.908 13 C -0.184 4.184 14 C 0.002 3.998 15 C -0.558 4.558 16 H 0.078 0.922 17 C -0.143 4.143 18 N -0.529 5.529 19 Si 0.719 3.281 20 H -0.197 1.197 21 H -0.211 1.211 22 H -0.210 1.210 23 N -0.160 5.160 24 C -0.005 4.005 25 C -0.029 4.029 26 O -0.306 6.306 27 C -0.063 4.063 28 C -0.060 4.060 29 C -0.143 4.143 30 H 0.233 0.767 31 H 0.111 0.889 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.098 0.902 35 H 0.074 0.926 36 H 0.051 0.949 37 H 0.094 0.906 38 H 0.080 0.920 39 H 0.031 0.969 40 H 0.051 0.949 41 H 0.070 0.930 42 H 0.119 0.881 43 H 0.125 0.875 44 H 0.072 0.928 45 H 0.086 0.914 46 H 0.106 0.894 47 H 0.059 0.941 48 H 0.066 0.934 49 H 0.075 0.925 50 H 0.098 0.902 51 H 0.096 0.904 52 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -21.816 -1.823 -6.134 22.735 hybrid contribution 0.266 1.161 0.585 1.327 sum -21.550 -0.662 -5.549 22.263 Atomic orbital electron populations 1.24884 0.95885 1.01334 1.00794 1.22987 0.94124 1.00075 1.00316 1.18416 0.84499 1.00848 0.96405 1.21631 0.94056 1.01747 0.96838 1.22133 0.94932 0.97801 0.91101 1.58518 1.04153 1.51608 1.04394 1.22117 0.90991 0.83030 1.07482 1.74557 0.95736 1.25651 1.19249 1.74094 1.14477 1.04676 1.19071 1.25728 0.83518 0.94934 1.00286 1.20053 0.89043 0.92702 1.00786 0.90840 1.21680 0.99387 1.03305 0.94051 1.19104 0.93291 0.98526 0.88912 1.21173 1.13211 1.13587 1.07818 0.92226 1.25001 0.97724 0.95885 0.95656 1.69985 1.36900 1.34635 1.11366 0.86557 0.81955 0.81699 0.77915 1.19658 1.21124 1.20961 1.46257 1.07104 1.07034 1.55640 1.21450 1.01114 0.80321 0.97592 1.22761 0.97908 0.85751 0.96494 1.87748 1.78315 1.34766 1.29806 1.22765 1.01105 0.97905 0.84510 1.22131 0.94906 0.98094 0.90824 1.21633 0.94045 1.01640 0.96971 0.76733 0.88866 0.90412 0.90449 0.90188 0.92562 0.94892 0.90564 0.92003 0.96943 0.94912 0.92973 0.88065 0.87509 0.92798 0.91389 0.89431 0.94069 0.93359 0.92474 0.90195 0.90418 0.90414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.69 19.25 29.55 0.57 -1.12 16 2 C -0.18 -1.58 12.57 -37.12 -0.47 -2.05 16 3 C 0.02 0.14 2.63 -93.28 -0.25 -0.11 16 4 C -0.10 -0.86 5.33 -26.65 -0.14 -1.00 16 5 C 0.07 0.70 5.38 -3.83 -0.02 0.68 16 6 N -0.46 -5.66 4.64 -174.55 -0.81 -6.47 16 7 C 0.32 5.12 6.41 -318.86 -2.04 3.07 16 8 N -0.31 -5.94 12.19 30.32 0.37 -5.57 16 9 N -0.28 -6.08 12.18 32.99 0.40 -5.68 16 10 C 0.22 4.31 6.58 -154.02 -1.01 3.29 16 11 C 0.00 -0.09 2.71 -91.77 -0.25 -0.34 16 12 H 0.07 1.37 7.07 -51.93 -0.37 1.00 16 13 C -0.13 -2.34 8.99 37.16 0.33 -2.01 16 14 C 0.04 1.00 4.43 -27.88 -0.12 0.87 16 15 C -0.52 -13.85 8.41 -34.44 -0.29 -14.14 16 16 H 0.06 1.51 7.06 -52.49 -0.37 1.14 16 17 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 18 N -0.89 -26.27 13.29 55.43 0.74 -25.54 16 19 Si 0.89 20.99 29.54 -169.99 -5.02 15.97 16 20 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 21 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 23 N -0.47 -7.55 2.81 -114.08 -0.32 -7.87 16 24 C 0.12 1.57 6.16 -4.04 -0.02 1.54 16 25 C 0.05 0.66 6.26 37.16 0.23 0.89 16 26 O -0.39 -5.03 10.70 -35.23 -0.38 -5.41 16 27 C 0.03 0.35 11.01 101.05 1.11 1.46 16 28 C 0.07 0.75 5.38 -3.84 -0.02 0.73 16 29 C -0.10 -0.91 5.33 -26.65 -0.14 -1.05 16 30 H 0.22 1.00 7.80 -54.09 -0.42 0.58 16 31 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.08 0.85 8.10 -51.93 -0.42 0.43 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.08 1.43 6.95 -51.93 -0.36 1.07 16 38 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 39 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.03 0.92 8.14 -51.93 -0.42 0.49 16 41 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 42 H 0.10 1.26 7.47 -51.93 -0.39 0.87 16 43 H 0.11 1.25 8.11 -51.93 -0.42 0.82 16 44 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 46 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 47 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 48 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 49 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 50 H 0.08 0.95 8.10 -51.93 -0.42 0.53 16 51 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 52 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 428.20 15.07 6.45 6.45 Total: -1.00 -32.35 428.20 -10.27 -42.62 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -9.07 Total: -0.78 kcal Atomic # 6 Polarization: -5.09 SS G_CDS: -2.63 Total: -7.72 kcal Atomic # 7 Polarization: -51.50 SS G_CDS: 0.38 Total: -51.12 kcal Atomic # 8 Polarization: -5.03 SS G_CDS: -0.38 Total: -5.41 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 6.45 Total: 6.45 kcal Total: -32.35 -10.27 -42.62 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341299924.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.524 kcal (2) G-P(sol) polarization free energy of solvation -32.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.617 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds