Wall clock time and date at job start Wed Apr 1 2020 04:50:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 C 1.53124 * 109.52129 * 119.68687 * 3 2 1 5 5 C 1.53035 * 109.27887 * 177.56026 * 4 3 2 6 6 N 1.46848 * 109.52111 * 300.82085 * 5 4 3 7 7 C 1.38587 * 110.99799 * 185.84088 * 6 5 4 8 8 N 1.31221 * 126.46859 * 297.47785 * 7 6 5 9 9 N 1.28531 * 109.85823 * 179.74017 * 8 7 6 10 10 C 1.30301 * 110.05107 * 0.02562 * 9 8 7 11 11 C 1.50697 * 126.34650 * 179.97438 * 10 9 8 12 12 H 1.09001 * 109.47528 * 180.02562 * 11 10 9 13 13 C 1.53001 * 109.47319 * 60.02065 * 11 10 9 14 14 C 1.52997 * 109.47014 * 300.02178 * 11 10 9 15 15 C 1.50704 * 109.47086 * 184.99901 * 14 11 10 16 16 H 1.07998 * 120.00381 * 359.97438 * 15 14 11 17 17 C 1.37880 * 119.99610 * 179.97438 * 15 14 11 18 18 N 1.31512 * 120.00560 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99759 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47149 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47561 * 119.99573 * 19 17 15 22 22 H 1.48501 * 109.47027 * 240.00142 * 19 17 15 23 23 N 1.36451 * 126.47570 * 117.16523 * 7 6 5 24 24 C 1.46503 * 127.13390 * 0.24160 * 23 7 6 25 25 C 1.53005 * 109.47028 * 95.16952 * 24 23 7 26 26 O 1.42900 * 109.46915 * 184.87174 * 25 24 23 27 27 C 1.42895 * 113.99991 * 179.97438 * 26 25 24 28 28 C 1.46846 * 111.19976 * 61.74301 * 6 5 4 29 29 C 1.53035 * 109.52331 * 298.25634 * 28 6 5 30 30 H 4.44834 * 5.63034 * 180.02562 * 4 1 2 31 31 H 1.09001 * 109.57644 * 359.52766 * 3 2 1 32 32 H 1.09000 * 109.50322 * 57.61729 * 4 3 2 33 33 H 1.09001 * 109.50254 * 297.49925 * 4 3 2 34 34 H 1.09002 * 109.46395 * 180.80508 * 5 4 3 35 35 H 1.09002 * 109.46307 * 60.83439 * 5 4 3 36 36 H 1.09002 * 109.47251 * 59.99925 * 13 11 10 37 37 H 1.08998 * 109.47241 * 180.02562 * 13 11 10 38 38 H 1.09006 * 109.47096 * 300.00301 * 13 11 10 39 39 H 1.09005 * 109.47099 * 305.00107 * 14 11 10 40 40 H 1.09002 * 109.47725 * 64.99984 * 14 11 10 41 41 H 0.96997 * 120.00496 * 180.02562 * 18 17 15 42 42 H 1.09004 * 109.46792 * 215.16621 * 24 23 7 43 43 H 1.08999 * 109.47044 * 335.16947 * 24 23 7 44 44 H 1.09000 * 109.47295 * 304.86936 * 25 24 23 45 45 H 1.08996 * 109.47007 * 64.86809 * 25 24 23 46 46 H 1.08994 * 109.47248 * 179.97438 * 27 26 25 47 47 H 1.09002 * 109.47016 * 299.99975 * 27 26 25 48 48 H 1.08999 * 109.47276 * 60.00084 * 27 26 25 49 49 H 1.09002 * 109.46562 * 58.26989 * 28 6 5 50 50 H 1.08998 * 109.46505 * 178.24270 * 28 6 5 51 51 H 1.09005 * 109.50449 * 299.24318 * 29 28 6 52 52 H 1.08998 * 109.50755 * 179.11822 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1574 0.7157 -1.2538 5 6 4.6865 0.7668 -1.2181 6 7 5.1256 1.4807 -0.0123 7 6 6.4999 1.6595 -0.0138 8 7 7.4095 0.7138 0.0016 9 7 8.5834 1.2370 -0.0109 10 6 8.4931 2.5366 -0.0343 11 6 9.6421 3.5115 -0.0544 12 1 9.2542 4.5301 -0.0716 13 6 10.4947 3.2693 -1.3015 14 6 10.5005 3.3139 1.1965 15 6 11.5770 4.3677 1.2387 16 1 11.6427 5.1045 0.4517 17 6 12.4782 4.3913 2.2820 18 7 12.3987 3.4939 3.2400 19 14 13.8121 5.6979 2.3346 20 1 13.6865 6.5816 1.1477 21 1 13.6649 6.5061 3.5717 22 1 15.1456 5.0445 2.3258 23 7 7.1627 2.8520 -0.0376 24 6 6.5714 4.1922 -0.0616 25 6 6.4874 4.7381 1.3653 26 8 5.8084 5.9955 1.3549 27 6 5.6751 6.5946 2.6454 28 6 4.6865 0.7867 1.2051 29 6 3.1574 0.7362 1.2418 30 1 -1.0501 0.0000 0.0003 31 1 3.0117 -1.0261 0.0085 32 1 2.7599 1.7302 -1.2818 33 1 2.8321 0.1721 -2.1408 34 1 5.0532 1.2879 -2.1024 35 1 5.0836 -0.2482 -1.2040 36 1 9.8832 3.4101 -2.1928 37 1 11.3260 3.9742 -1.3158 38 1 10.8827 2.2508 -1.2842 39 1 9.8739 3.3989 2.0844 40 1 10.9602 2.3259 1.1695 41 1 13.0324 3.5106 3.9742 42 1 7.1922 4.8524 -0.6673 43 1 5.5705 4.1401 -0.4901 44 1 5.9395 4.0345 1.9919 45 1 7.4934 4.8717 1.7629 46 1 5.1498 7.5451 2.5521 47 1 5.1101 5.9293 3.2982 48 1 6.6641 6.7667 3.0700 49 1 5.0836 -0.2284 1.2078 50 1 5.0532 1.3223 2.0808 51 1 2.7599 1.7511 1.2530 52 1 2.8321 0.2074 2.1376 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001341299924.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:50:15 Heat of formation + Delta-G solvation = 62.064049 kcal Electronic energy + Delta-G solvation = -31287.364842 eV Core-core repulsion = 27288.928024 eV Total energy + Delta-G solvation = -3998.436819 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -44.12263 -40.30654 -39.09563 -37.20105 -36.33459 -35.76611 -34.22991 -32.52319 -32.06301 -30.93214 -29.96951 -28.81849 -27.34900 -26.19562 -25.85525 -24.64597 -24.29458 -23.77091 -22.20913 -21.23090 -20.48621 -19.05568 -18.74061 -18.39269 -17.79567 -17.40220 -17.12804 -16.73221 -16.48875 -16.09219 -15.86184 -15.74083 -15.63805 -15.19954 -14.97037 -14.79170 -14.63311 -14.46727 -14.26971 -13.68305 -13.47004 -13.39211 -13.03641 -12.83070 -12.78865 -12.73630 -12.50222 -12.38825 -12.34624 -12.30174 -12.25801 -12.20023 -12.16549 -11.98651 -11.61041 -11.43608 -11.21323 -11.16781 -10.95752 -10.93853 -10.80818 -10.55985 -10.00139 -9.93508 -8.16739 -6.27899 0.60400 1.07241 1.42950 1.44402 1.56713 1.74092 1.91773 1.95989 2.39638 2.43100 2.86703 3.17582 3.33635 3.41296 3.55827 3.70040 3.80611 3.84157 3.89187 3.99618 4.09681 4.15158 4.22829 4.29547 4.31366 4.37989 4.42205 4.46831 4.49526 4.50605 4.52873 4.59689 4.66464 4.71634 4.75285 4.80938 4.82224 4.92832 5.05962 5.09249 5.10863 5.16110 5.23505 5.31765 5.37557 5.44914 5.51257 5.65715 5.68543 5.83349 5.95908 6.15507 6.20531 6.75141 6.87733 7.41181 7.66865 8.95736 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014323 B = 0.002727 C = 0.002496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1954.468989 B =10267.063281 C =11217.017486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.207 4.207 3 C 0.018 3.982 4 C -0.093 4.093 5 C 0.068 3.932 6 N -0.453 5.453 7 C 0.342 3.658 8 N -0.341 5.341 9 N -0.323 5.323 10 C 0.211 3.789 11 C 0.006 3.994 12 H 0.092 0.908 13 C -0.119 4.119 14 C 0.053 3.947 15 C -0.526 4.526 16 H 0.076 0.924 17 C -0.001 4.001 18 N -0.935 5.935 19 Si 0.964 3.036 20 H -0.253 1.253 21 H -0.282 1.282 22 H -0.284 1.284 23 N -0.461 5.461 24 C 0.118 3.882 25 C 0.058 3.942 26 O -0.393 6.393 27 C 0.026 3.974 28 C 0.068 3.932 29 C -0.093 4.093 30 H 0.243 0.757 31 H 0.095 0.905 32 H 0.080 0.920 33 H 0.093 0.907 34 H 0.080 0.920 35 H 0.047 0.953 36 H 0.063 0.937 37 H 0.074 0.926 38 H 0.042 0.958 39 H -0.021 1.021 40 H -0.009 1.009 41 H 0.261 0.739 42 H 0.114 0.886 43 H 0.129 0.871 44 H 0.052 0.948 45 H 0.041 0.959 46 H 0.113 0.887 47 H 0.050 0.950 48 H 0.039 0.961 49 H 0.047 0.953 50 H 0.068 0.932 51 H 0.079 0.921 52 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.503 0.882 -7.537 25.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.207 4.207 3 C 0.000 4.000 4 C -0.131 4.131 5 C -0.059 4.059 6 N -0.180 5.180 7 C -0.015 4.015 8 N -0.184 5.184 9 N -0.162 5.162 10 C -0.057 4.057 11 C -0.015 4.015 12 H 0.110 0.890 13 C -0.177 4.177 14 C 0.015 3.985 15 C -0.564 4.564 16 H 0.094 0.906 17 C -0.199 4.199 18 N -0.576 5.576 19 Si 0.789 3.211 20 H -0.177 1.177 21 H -0.208 1.208 22 H -0.210 1.210 23 N -0.155 5.155 24 C -0.005 4.005 25 C -0.020 4.020 26 O -0.311 6.311 27 C -0.070 4.070 28 C -0.059 4.059 29 C -0.131 4.131 30 H 0.259 0.741 31 H 0.113 0.887 32 H 0.099 0.901 33 H 0.111 0.889 34 H 0.099 0.901 35 H 0.065 0.935 36 H 0.082 0.918 37 H 0.093 0.907 38 H 0.061 0.939 39 H -0.003 1.003 40 H 0.010 0.990 41 H 0.070 0.930 42 H 0.132 0.868 43 H 0.147 0.853 44 H 0.070 0.930 45 H 0.059 0.941 46 H 0.131 0.869 47 H 0.069 0.931 48 H 0.057 0.943 49 H 0.065 0.935 50 H 0.087 0.913 51 H 0.098 0.902 52 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -24.135 0.009 -7.541 25.285 hybrid contribution 0.824 0.557 1.063 1.456 sum -23.311 0.566 -6.477 24.200 Atomic orbital electron populations 1.25652 0.96746 0.99989 0.99353 1.23166 0.94559 1.01356 1.01664 1.18356 0.84727 1.00857 0.96038 1.21560 0.91839 1.02161 0.97535 1.22218 0.96633 0.96977 0.90077 1.58840 1.01377 1.52151 1.05671 1.22520 0.92144 0.82503 1.04319 1.74481 0.95742 1.26884 1.21341 1.73997 1.16037 1.05969 1.20213 1.25398 0.84657 0.94341 1.01353 1.19797 0.88932 0.93898 0.98856 0.88966 1.21602 0.99515 1.02068 0.94506 1.18829 0.93269 0.96124 0.90289 1.21589 1.13140 1.13726 1.07924 0.90605 1.25980 1.00428 0.98170 0.95302 1.70147 1.38196 1.36933 1.12312 0.85411 0.78352 0.78850 0.78525 1.17683 1.20800 1.20996 1.46328 1.06066 1.08239 1.54843 1.21698 1.02313 0.78862 0.97601 1.22556 0.96501 0.86329 0.96608 1.87736 1.77951 1.34206 1.31237 1.22981 1.01134 0.99136 0.83700 1.22167 0.96791 0.97098 0.89840 1.21547 0.91631 1.02025 0.97896 0.74093 0.88743 0.90141 0.88898 0.90117 0.93464 0.91776 0.90667 0.93867 1.00274 0.99016 0.92999 0.86814 0.85260 0.93008 0.94099 0.86905 0.93130 0.94257 0.93471 0.91312 0.90247 0.89307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.63 19.25 74.32 1.43 -1.20 16 2 C -0.21 -3.27 12.57 31.13 0.39 -2.88 16 3 C 0.02 0.28 2.63 -12.52 -0.03 0.24 16 4 C -0.09 -1.34 5.33 30.65 0.16 -1.18 16 5 C 0.07 1.33 5.38 86.32 0.46 1.80 16 6 N -0.45 -10.79 4.64 -706.15 -3.28 -14.07 16 7 C 0.34 10.98 6.41 260.11 1.67 12.65 16 8 N -0.34 -13.57 12.19 -58.00 -0.71 -14.28 16 9 N -0.32 -14.43 12.18 -49.54 -0.60 -15.03 16 10 C 0.21 8.37 6.58 137.64 0.91 9.28 16 11 C 0.01 0.25 2.71 -11.54 -0.03 0.22 16 12 H 0.09 3.37 7.07 -2.39 -0.02 3.35 16 13 C -0.12 -4.38 8.99 71.98 0.65 -3.73 16 14 C 0.05 2.79 4.43 29.85 0.13 2.92 16 15 C -0.53 -28.43 8.41 25.60 0.22 -28.21 16 16 H 0.08 3.78 7.06 -2.91 -0.02 3.76 16 17 C 0.00 -0.07 5.46 84.66 0.46 0.39 16 18 N -0.94 -57.19 13.29 21.45 0.28 -56.91 16 19 Si 0.96 43.21 29.54 68.60 2.03 45.24 16 20 H -0.25 -10.51 7.11 99.48 0.71 -9.80 16 21 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 22 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 23 N -0.46 -14.86 2.81 -514.83 -1.45 -16.31 16 24 C 0.12 2.93 6.16 86.38 0.53 3.46 16 25 C 0.06 1.55 6.26 71.98 0.45 2.00 16 26 O -0.39 -9.59 10.70 -148.98 -1.59 -11.18 16 27 C 0.03 0.51 11.01 113.37 1.25 1.76 16 28 C 0.07 1.48 5.38 86.33 0.46 1.95 16 29 C -0.09 -1.48 5.33 30.65 0.16 -1.32 16 30 H 0.24 1.42 7.80 -4.41 -0.03 1.39 16 31 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.09 1.09 8.14 -2.39 -0.02 1.08 16 34 H 0.08 1.59 8.10 -2.39 -0.02 1.58 16 35 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.07 2.75 6.95 -2.39 -0.02 2.74 16 38 H 0.04 1.73 8.14 -2.38 -0.02 1.71 16 39 H -0.02 -1.24 8.14 -2.38 -0.02 -1.25 16 40 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 41 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 42 H 0.11 2.59 7.47 -2.38 -0.02 2.57 16 43 H 0.13 2.68 8.11 -2.39 -0.02 2.66 16 44 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 45 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 46 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 47 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 48 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 49 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 50 H 0.07 1.65 8.10 -2.39 -0.02 1.63 16 51 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 52 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 Total: -1.00 -72.80 428.20 4.83 -67.97 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: 0.88 Total: 16.42 kcal Atomic # 6 Polarization: -11.12 SS G_CDS: 9.27 Total: -1.85 kcal Atomic # 7 Polarization: -110.85 SS G_CDS: -5.75 Total: -116.60 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: -1.59 Total: -11.18 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Total: -72.80 4.83 -67.97 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341299924.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.035 kcal (2) G-P(sol) polarization free energy of solvation -72.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.971 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds