Wall clock time and date at job start Wed Apr 1 2020 04:50:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 H 1.08995 * 109.50732 * 355.93200 * 3 2 1 5 5 C 1.53121 * 109.50443 * 116.00890 * 3 2 1 6 6 C 1.53117 * 109.21553 * 177.56243 * 5 3 2 7 7 C 1.53046 * 109.27380 * 302.44131 * 6 5 3 8 8 N 1.46848 * 109.57232 * 59.08270 * 7 6 5 9 9 C 1.38586 * 110.99645 * 174.19003 * 8 7 6 10 10 N 1.31223 * 126.47198 * 88.70881 * 9 8 7 11 11 N 1.28520 * 109.86320 * 179.97438 * 10 9 8 12 12 C 1.30306 * 110.05015 * 0.02562 * 11 10 9 13 13 C 1.50697 * 126.34273 * 180.02562 * 12 11 10 14 14 H 1.09004 * 109.47076 * 179.97438 * 13 12 11 15 15 C 1.53000 * 109.47098 * 59.98138 * 13 12 11 16 16 C 1.52997 * 109.47821 * 299.97737 * 13 12 11 17 17 C 1.50693 * 109.47501 * 185.00118 * 16 13 12 18 18 H 1.08001 * 119.99940 * 0.02562 * 17 16 13 19 19 C 1.37876 * 120.00144 * 179.97438 * 17 16 13 20 20 N 1.31520 * 119.99975 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00206 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47028 * 60.00136 * 21 19 17 23 23 H 1.48495 * 109.47142 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47102 * 300.00164 * 21 19 17 25 25 N 1.36447 * 126.47720 * 268.39676 * 9 8 7 26 26 C 1.46500 * 127.13243 * 0.03562 * 25 9 8 27 27 C 1.53000 * 109.47187 * 95.89252 * 26 25 9 28 28 O 1.42903 * 109.47493 * 185.09980 * 27 26 25 29 29 C 1.42898 * 114.00200 * 179.97438 * 28 27 26 30 30 C 1.46846 * 111.19947 * 298.28409 * 8 7 6 31 31 H 4.18796 * 15.03129 * 0.02562 * 4 2 1 32 32 H 1.09002 * 109.51971 * 297.50296 * 5 3 2 33 33 H 1.08999 * 109.52383 * 57.62197 * 5 3 2 34 34 H 1.08998 * 109.50393 * 62.31882 * 6 5 3 35 35 H 1.08996 * 109.50595 * 182.43748 * 6 5 3 36 36 H 1.08999 * 109.40851 * 299.07002 * 7 6 5 37 37 H 1.08996 * 109.45085 * 179.12477 * 7 6 5 38 38 H 1.09002 * 109.47220 * 299.99221 * 15 13 12 39 39 H 1.08996 * 109.47640 * 59.99617 * 15 13 12 40 40 H 1.09000 * 109.47384 * 179.97438 * 15 13 12 41 41 H 1.09000 * 109.46434 * 305.00576 * 16 13 12 42 42 H 1.09005 * 109.46777 * 64.99914 * 16 13 12 43 43 H 0.96995 * 119.99973 * 180.02562 * 20 19 17 44 44 H 1.08998 * 109.47175 * 215.88868 * 26 25 9 45 45 H 1.08998 * 109.47600 * 335.88933 * 26 25 9 46 46 H 1.08997 * 109.47086 * 305.10412 * 27 26 25 47 47 H 1.09007 * 109.47058 * 65.09999 * 27 26 25 48 48 H 1.09003 * 109.46882 * 59.99758 * 29 28 27 49 49 H 1.08999 * 109.46988 * 180.02562 * 29 28 27 50 50 H 1.09004 * 109.47034 * 300.00568 * 29 28 27 51 51 H 1.08989 * 109.46724 * 301.73279 * 30 8 7 52 52 H 1.09005 * 109.45780 * 181.75773 * 30 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0104 -1.0240 0.0729 5 6 3.1569 0.6338 -1.2972 6 6 4.6868 0.6866 -1.2637 7 6 5.1382 1.4762 -0.0328 8 7 4.6248 0.8300 1.1818 9 6 5.1226 1.4448 2.3197 10 7 4.5922 2.4662 2.9499 11 7 5.3165 2.7771 3.9650 12 6 6.3440 1.9794 4.0417 13 6 7.4269 2.0161 5.0891 14 1 8.1505 1.2252 4.8915 15 6 6.8064 1.8057 6.4717 16 6 8.1312 3.3737 5.0474 17 6 9.2919 3.3672 6.0084 18 1 9.5061 2.4831 6.5905 19 6 10.0810 4.4897 6.1439 20 7 9.8204 5.5662 5.4347 21 14 11.5202 4.4815 7.3346 22 1 12.4775 3.4147 6.9467 23 1 12.2036 5.7992 7.2942 24 1 11.0232 4.2243 8.7101 25 7 6.2538 1.0987 2.9997 26 6 7.1814 0.0114 2.6778 27 6 8.3534 0.5648 1.8647 28 8 9.1959 -0.5123 1.4496 29 6 10.3267 -0.1017 0.6785 30 6 3.1565 0.8116 1.1933 31 1 -1.0501 -0.0011 -0.0004 32 1 2.8316 0.0347 -2.1477 33 1 2.7595 1.6445 -1.3904 34 1 5.0848 -0.3268 -1.2109 35 1 5.0539 1.1758 -2.1658 36 1 4.7522 2.4938 -0.0937 37 1 6.2273 1.5024 0.0023 38 1 6.0829 2.5966 6.6695 39 1 6.3047 0.8385 6.5015 40 1 7.5897 1.8318 7.2293 41 1 8.4963 3.5626 4.0378 42 1 7.4281 4.1566 5.3319 43 1 10.3758 6.3557 5.5297 44 1 7.5564 -0.4314 3.6005 45 1 6.6617 -0.7491 2.0949 46 1 7.9723 1.0870 0.9872 47 1 8.9268 1.2584 2.4797 48 1 10.9412 0.5784 1.2685 49 1 10.9151 -0.9767 0.4023 50 1 9.9862 0.4065 -0.2237 51 1 2.7799 1.8321 1.1266 52 1 2.8063 0.3550 2.1191 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001341939359.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:50:42 Heat of formation + Delta-G solvation = 79.655344 kcal Electronic energy + Delta-G solvation = -31433.739188 eV Core-core repulsion = 27436.065185 eV Total energy + Delta-G solvation = -3997.674003 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.72961 -39.43442 -38.10526 -35.56127 -35.16395 -34.40490 -32.88443 -32.14037 -30.43166 -29.79735 -28.56820 -26.96814 -26.44277 -24.85854 -24.24866 -23.99013 -23.37543 -22.02006 -21.14107 -20.09999 -19.06595 -18.46014 -17.31791 -16.68696 -16.43500 -16.15415 -16.09264 -15.64561 -15.26168 -15.01099 -14.77574 -14.54234 -14.33145 -14.19387 -13.94379 -13.79891 -13.35566 -13.23101 -12.87813 -12.50042 -12.30437 -12.03224 -11.88735 -11.67857 -11.50192 -11.45040 -11.34384 -11.22173 -11.09734 -11.06756 -10.94553 -10.79815 -10.52904 -10.39788 -10.32658 -10.25370 -10.02147 -9.91366 -9.80846 -9.62274 -9.17102 -9.08641 -8.39260 -8.26103 -6.03167 -4.06923 1.96748 2.24865 2.59664 2.62482 3.21361 3.30481 3.35990 3.37344 3.41528 3.89008 4.13915 4.41660 4.48692 4.56044 4.58092 4.68604 4.80547 4.87962 4.94256 5.06676 5.07444 5.21862 5.22900 5.24657 5.29609 5.32067 5.35652 5.38899 5.47440 5.52831 5.56762 5.59757 5.64849 5.70145 5.74984 5.77848 5.84331 6.02330 6.04199 6.06940 6.21188 6.27929 6.57359 6.67677 6.77252 6.87296 6.91740 7.02759 7.36576 7.39605 7.57399 7.75009 7.95594 8.31742 8.98342 9.13620 9.56799 11.07766 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013023 B = 0.002901 C = 0.002575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2149.557308 B = 9648.672963 C =10873.107823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.179 4.179 3 C 0.024 3.976 4 H 0.101 0.899 5 C -0.113 4.113 6 C -0.114 4.114 7 C 0.058 3.942 8 N -0.457 5.457 9 C 0.324 3.676 10 N -0.311 5.311 11 N -0.283 5.283 12 C 0.221 3.779 13 C -0.004 4.004 14 H 0.073 0.927 15 C -0.126 4.126 16 C 0.040 3.960 17 C -0.521 4.521 18 H 0.058 0.942 19 C 0.060 3.940 20 N -0.891 5.891 21 Si 0.891 3.109 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.275 1.275 25 N -0.469 5.469 26 C 0.117 3.883 27 C 0.046 3.954 28 O -0.387 6.387 29 C 0.033 3.967 30 C 0.082 3.918 31 H 0.217 0.783 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.051 0.949 37 H 0.077 0.923 38 H 0.061 0.939 39 H 0.032 0.968 40 H 0.075 0.925 41 H 0.012 0.988 42 H 0.032 0.968 43 H 0.262 0.738 44 H 0.103 0.897 45 H 0.108 0.892 46 H 0.052 0.948 47 H 0.069 0.931 48 H 0.048 0.952 49 H 0.088 0.912 50 H 0.041 0.959 51 H 0.061 0.939 52 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.241 -14.601 -14.901 22.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.179 4.179 3 C 0.006 3.994 4 H 0.119 0.881 5 C -0.151 4.151 6 C -0.152 4.152 7 C -0.069 4.069 8 N -0.181 5.181 9 C -0.032 4.032 10 N -0.155 5.155 11 N -0.121 5.121 12 C -0.046 4.046 13 C -0.025 4.025 14 H 0.091 0.909 15 C -0.184 4.184 16 C 0.002 3.998 17 C -0.559 4.559 18 H 0.077 0.923 19 C -0.142 4.142 20 N -0.529 5.529 21 Si 0.719 3.281 22 H -0.203 1.203 23 H -0.213 1.213 24 H -0.201 1.201 25 N -0.164 5.164 26 C -0.007 4.007 27 C -0.031 4.031 28 O -0.305 6.305 29 C -0.063 4.063 30 C -0.045 4.045 31 H 0.234 0.766 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.070 0.930 37 H 0.095 0.905 38 H 0.080 0.920 39 H 0.051 0.949 40 H 0.094 0.906 41 H 0.030 0.970 42 H 0.051 0.949 43 H 0.071 0.929 44 H 0.121 0.879 45 H 0.126 0.874 46 H 0.070 0.930 47 H 0.088 0.912 48 H 0.067 0.933 49 H 0.106 0.894 50 H 0.059 0.941 51 H 0.080 0.920 52 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -10.004 -13.979 -14.575 22.537 hybrid contribution 1.386 0.086 0.082 1.391 sum -8.618 -13.893 -14.494 21.849 Atomic orbital electron populations 1.24898 0.95877 1.00946 1.00214 1.22796 0.93970 1.00418 1.00739 1.18291 0.84365 1.01354 0.95402 0.88061 1.21630 0.95570 1.01531 0.96320 1.21607 0.95282 1.01557 0.96719 1.22282 1.00261 0.96607 0.87745 1.58432 1.09794 1.51557 0.98360 1.22132 0.89488 0.95259 0.96274 1.74579 1.25029 1.10207 1.05707 1.74076 1.03103 1.21533 1.13432 1.25711 0.99194 0.88371 0.91331 1.20045 0.89959 1.03354 0.89158 0.90868 1.21679 1.01093 0.99829 0.95825 1.19091 0.94799 0.88697 0.97175 1.21096 1.12330 0.99014 1.23475 0.92343 1.24994 0.97700 0.95558 0.95948 1.69969 1.39272 1.03190 1.40502 0.86670 0.82568 0.77128 0.81718 1.20294 1.21332 1.20099 1.46193 1.20569 1.27113 1.22516 1.21476 0.89388 0.87803 1.02015 1.22820 0.91917 0.90065 0.98336 1.87758 1.38123 1.32124 1.72535 1.22777 0.87923 1.01206 0.94426 1.21960 0.83711 1.00502 0.98334 0.76580 0.90956 0.91339 0.90475 0.90353 0.93021 0.90485 0.92005 0.94871 0.90581 0.96984 0.94922 0.92860 0.87902 0.87397 0.93014 0.91230 0.93316 0.89380 0.94074 0.92039 0.89847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.79 19.25 29.55 0.57 -1.22 16 2 C -0.18 -1.79 12.56 -37.12 -0.47 -2.25 16 3 C 0.02 0.23 2.73 -93.32 -0.25 -0.03 16 4 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 5 C -0.11 -0.89 5.24 -26.61 -0.14 -1.03 16 6 C -0.11 -0.88 6.10 -26.65 -0.16 -1.04 16 7 C 0.06 0.63 5.39 -3.83 -0.02 0.61 16 8 N -0.46 -5.75 4.63 -174.55 -0.81 -6.56 16 9 C 0.32 5.31 6.72 -318.87 -2.14 3.17 16 10 N -0.31 -6.16 11.68 30.32 0.35 -5.80 16 11 N -0.28 -6.15 12.18 32.99 0.40 -5.75 16 12 C 0.22 4.33 6.58 -154.02 -1.01 3.31 16 13 C 0.00 -0.08 2.71 -91.77 -0.25 -0.33 16 14 H 0.07 1.36 7.10 -51.93 -0.37 0.99 16 15 C -0.13 -2.37 8.98 37.16 0.33 -2.03 16 16 C 0.04 1.02 4.43 -27.89 -0.12 0.89 16 17 C -0.52 -13.90 8.41 -34.44 -0.29 -14.19 16 18 H 0.06 1.48 7.06 -52.49 -0.37 1.11 16 19 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 20 N -0.89 -26.32 13.29 55.43 0.74 -25.58 16 21 Si 0.89 21.00 29.54 -169.99 -5.02 15.98 16 22 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 23 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 24 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 25 N -0.47 -7.65 2.81 -114.08 -0.32 -7.97 16 26 C 0.12 1.52 6.14 -4.04 -0.02 1.50 16 27 C 0.05 0.61 6.26 37.16 0.23 0.84 16 28 O -0.39 -4.84 10.70 -35.23 -0.38 -5.22 16 29 C 0.03 0.33 11.01 101.05 1.11 1.44 16 30 C 0.08 0.97 4.32 -3.83 -0.02 0.96 16 31 H 0.22 1.18 7.80 -54.09 -0.42 0.76 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.08 0.86 6.77 -51.93 -0.35 0.51 16 38 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 39 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.08 1.44 6.95 -51.93 -0.36 1.08 16 41 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.03 0.92 8.14 -51.93 -0.42 0.49 16 43 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 44 H 0.10 1.27 7.51 -51.93 -0.39 0.88 16 45 H 0.11 1.24 8.10 -51.93 -0.42 0.82 16 46 H 0.05 0.66 6.81 -51.93 -0.35 0.31 16 47 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 48 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 49 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 50 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 51 H 0.06 0.82 8.06 -51.94 -0.42 0.40 16 52 H 0.08 1.07 8.10 -51.93 -0.42 0.65 16 LS Contribution 424.99 15.07 6.40 6.40 Total: -1.00 -32.49 424.99 -10.31 -42.81 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -8.93 Total: -0.48 kcal Atomic # 6 Polarization: -5.07 SS G_CDS: -2.75 Total: -7.82 kcal Atomic # 7 Polarization: -52.03 SS G_CDS: 0.36 Total: -51.67 kcal Atomic # 8 Polarization: -4.84 SS G_CDS: -0.38 Total: -5.22 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 6.40 Total: 6.40 kcal Total: -32.49 -10.31 -42.81 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341939359.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.461 kcal (2) G-P(sol) polarization free energy of solvation -32.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.806 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds