Wall clock time and date at job start Wed Apr 1 2020 04:50:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 H 1.08995 * 109.50732 * 355.93200 * 3 2 1 5 5 C 1.53121 * 109.50443 * 116.00890 * 3 2 1 6 6 C 1.53117 * 109.21553 * 177.56243 * 5 3 2 7 7 C 1.53046 * 109.27380 * 302.44131 * 6 5 3 8 8 N 1.46848 * 109.57232 * 59.08270 * 7 6 5 9 9 C 1.38586 * 110.99645 * 174.19003 * 8 7 6 10 10 N 1.31223 * 126.47198 * 88.70881 * 9 8 7 11 11 N 1.28520 * 109.86320 * 179.97438 * 10 9 8 12 12 C 1.30306 * 110.05015 * 0.02562 * 11 10 9 13 13 C 1.50697 * 126.34273 * 180.02562 * 12 11 10 14 14 H 1.09004 * 109.47076 * 179.97438 * 13 12 11 15 15 C 1.53000 * 109.47098 * 59.98138 * 13 12 11 16 16 C 1.52997 * 109.47821 * 299.97737 * 13 12 11 17 17 C 1.50693 * 109.47501 * 185.00118 * 16 13 12 18 18 H 1.08001 * 119.99940 * 0.02562 * 17 16 13 19 19 C 1.37876 * 120.00144 * 179.97438 * 17 16 13 20 20 N 1.31520 * 119.99975 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00206 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47028 * 60.00136 * 21 19 17 23 23 H 1.48495 * 109.47142 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47102 * 300.00164 * 21 19 17 25 25 N 1.36447 * 126.47720 * 268.39676 * 9 8 7 26 26 C 1.46500 * 127.13243 * 0.03562 * 25 9 8 27 27 C 1.53000 * 109.47187 * 95.89252 * 26 25 9 28 28 O 1.42903 * 109.47493 * 185.09980 * 27 26 25 29 29 C 1.42898 * 114.00200 * 179.97438 * 28 27 26 30 30 C 1.46846 * 111.19947 * 298.28409 * 8 7 6 31 31 H 4.18796 * 15.03129 * 0.02562 * 4 2 1 32 32 H 1.09002 * 109.51971 * 297.50296 * 5 3 2 33 33 H 1.08999 * 109.52383 * 57.62197 * 5 3 2 34 34 H 1.08998 * 109.50393 * 62.31882 * 6 5 3 35 35 H 1.08996 * 109.50595 * 182.43748 * 6 5 3 36 36 H 1.08999 * 109.40851 * 299.07002 * 7 6 5 37 37 H 1.08996 * 109.45085 * 179.12477 * 7 6 5 38 38 H 1.09002 * 109.47220 * 299.99221 * 15 13 12 39 39 H 1.08996 * 109.47640 * 59.99617 * 15 13 12 40 40 H 1.09000 * 109.47384 * 179.97438 * 15 13 12 41 41 H 1.09000 * 109.46434 * 305.00576 * 16 13 12 42 42 H 1.09005 * 109.46777 * 64.99914 * 16 13 12 43 43 H 0.96995 * 119.99973 * 180.02562 * 20 19 17 44 44 H 1.08998 * 109.47175 * 215.88868 * 26 25 9 45 45 H 1.08998 * 109.47600 * 335.88933 * 26 25 9 46 46 H 1.08997 * 109.47086 * 305.10412 * 27 26 25 47 47 H 1.09007 * 109.47058 * 65.09999 * 27 26 25 48 48 H 1.09003 * 109.46882 * 59.99758 * 29 28 27 49 49 H 1.08999 * 109.46988 * 180.02562 * 29 28 27 50 50 H 1.09004 * 109.47034 * 300.00568 * 29 28 27 51 51 H 1.08989 * 109.46724 * 301.73279 * 30 8 7 52 52 H 1.09005 * 109.45780 * 181.75773 * 30 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0104 -1.0240 0.0729 5 6 3.1569 0.6338 -1.2972 6 6 4.6868 0.6866 -1.2637 7 6 5.1382 1.4762 -0.0328 8 7 4.6248 0.8300 1.1818 9 6 5.1226 1.4448 2.3197 10 7 4.5922 2.4662 2.9499 11 7 5.3165 2.7771 3.9650 12 6 6.3440 1.9794 4.0417 13 6 7.4269 2.0161 5.0891 14 1 8.1505 1.2252 4.8915 15 6 6.8064 1.8057 6.4717 16 6 8.1312 3.3737 5.0474 17 6 9.2919 3.3672 6.0084 18 1 9.5061 2.4831 6.5905 19 6 10.0810 4.4897 6.1439 20 7 9.8204 5.5662 5.4347 21 14 11.5202 4.4815 7.3346 22 1 12.4775 3.4147 6.9467 23 1 12.2036 5.7992 7.2942 24 1 11.0232 4.2243 8.7101 25 7 6.2538 1.0987 2.9997 26 6 7.1814 0.0114 2.6778 27 6 8.3534 0.5648 1.8647 28 8 9.1959 -0.5123 1.4496 29 6 10.3267 -0.1017 0.6785 30 6 3.1565 0.8116 1.1933 31 1 -1.0501 -0.0011 -0.0004 32 1 2.8316 0.0347 -2.1477 33 1 2.7595 1.6445 -1.3904 34 1 5.0848 -0.3268 -1.2109 35 1 5.0539 1.1758 -2.1658 36 1 4.7522 2.4938 -0.0937 37 1 6.2273 1.5024 0.0023 38 1 6.0829 2.5966 6.6695 39 1 6.3047 0.8385 6.5015 40 1 7.5897 1.8318 7.2293 41 1 8.4963 3.5626 4.0378 42 1 7.4281 4.1566 5.3319 43 1 10.3758 6.3557 5.5297 44 1 7.5564 -0.4314 3.6005 45 1 6.6617 -0.7491 2.0949 46 1 7.9723 1.0870 0.9872 47 1 8.9268 1.2584 2.4797 48 1 10.9412 0.5784 1.2685 49 1 10.9151 -0.9767 0.4023 50 1 9.9862 0.4065 -0.2237 51 1 2.7799 1.8321 1.1266 52 1 2.8063 0.3550 2.1191 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001341939359.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:50:40 Heat of formation + Delta-G solvation = 62.532801 kcal Electronic energy + Delta-G solvation = -31434.481677 eV Core-core repulsion = 27436.065185 eV Total energy + Delta-G solvation = -3998.416492 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -44.15175 -40.36533 -39.10036 -37.19026 -36.33605 -35.56564 -34.25617 -33.55480 -31.22848 -30.94981 -30.06726 -28.83160 -27.33949 -26.06473 -25.71605 -24.89208 -24.63956 -23.61054 -22.25853 -21.16319 -20.51472 -19.27559 -18.70043 -18.21853 -17.70241 -17.35299 -17.15361 -16.80482 -16.53294 -16.18850 -15.93725 -15.81088 -15.50503 -15.14591 -14.97358 -14.82146 -14.78559 -14.46152 -14.25940 -13.73913 -13.61847 -13.41524 -13.01726 -12.87060 -12.81488 -12.76970 -12.68624 -12.47202 -12.34144 -12.29002 -12.23206 -12.03118 -11.93316 -11.84135 -11.62985 -11.42965 -11.23866 -11.20239 -11.11564 -10.97052 -10.78896 -10.55072 -10.40961 -9.65778 -8.16607 -6.28075 0.60090 1.01482 1.43583 1.46612 1.53836 1.72470 1.82452 1.90885 2.38888 2.43210 2.85667 3.17475 3.35793 3.44217 3.54071 3.67533 3.76199 3.81446 3.83682 3.94033 4.01557 4.14363 4.18115 4.23593 4.29802 4.36643 4.40897 4.47101 4.48015 4.50920 4.54928 4.59527 4.65437 4.73732 4.79101 4.82679 4.85870 4.97587 5.06466 5.07935 5.12618 5.15017 5.16683 5.33475 5.37219 5.44079 5.47837 5.58998 5.67815 5.82830 5.95619 6.10841 6.20069 6.69794 6.87056 7.41011 7.66308 8.95519 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013023 B = 0.002901 C = 0.002575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2149.557308 B = 9648.672963 C =10873.107823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.215 4.215 3 C 0.033 3.967 4 H 0.113 0.887 5 C -0.109 4.109 6 C -0.102 4.102 7 C 0.055 3.945 8 N -0.444 5.444 9 C 0.345 3.655 10 N -0.349 5.349 11 N -0.323 5.323 12 C 0.210 3.790 13 C 0.007 3.993 14 H 0.093 0.907 15 C -0.119 4.119 16 C 0.054 3.946 17 C -0.528 4.528 18 H 0.076 0.924 19 C 0.000 4.000 20 N -0.936 5.936 21 Si 0.964 3.036 22 H -0.262 1.262 23 H -0.290 1.290 24 H -0.265 1.265 25 N -0.463 5.463 26 C 0.114 3.886 27 C 0.056 3.944 28 O -0.392 6.392 29 C 0.026 3.974 30 C 0.086 3.914 31 H 0.245 0.755 32 H 0.093 0.907 33 H 0.059 0.941 34 H 0.091 0.909 35 H 0.099 0.901 36 H 0.034 0.966 37 H 0.075 0.925 38 H 0.041 0.959 39 H 0.062 0.938 40 H 0.075 0.925 41 H -0.020 1.020 42 H -0.010 1.010 43 H 0.262 0.738 44 H 0.114 0.886 45 H 0.132 0.868 46 H 0.054 0.946 47 H 0.041 0.959 48 H 0.037 0.963 49 H 0.113 0.887 50 H 0.052 0.948 51 H 0.041 0.959 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.817 -17.706 -16.021 25.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.215 4.215 3 C 0.015 3.985 4 H 0.131 0.869 5 C -0.147 4.147 6 C -0.140 4.140 7 C -0.072 4.072 8 N -0.169 5.169 9 C -0.012 4.012 10 N -0.192 5.192 11 N -0.162 5.162 12 C -0.059 4.059 13 C -0.014 4.014 14 H 0.111 0.889 15 C -0.177 4.177 16 C 0.016 3.984 17 C -0.566 4.566 18 H 0.094 0.906 19 C -0.198 4.198 20 N -0.576 5.576 21 Si 0.788 3.212 22 H -0.187 1.187 23 H -0.216 1.216 24 H -0.190 1.190 25 N -0.157 5.157 26 C -0.008 4.008 27 C -0.022 4.022 28 O -0.310 6.310 29 C -0.070 4.070 30 C -0.042 4.042 31 H 0.261 0.739 32 H 0.111 0.889 33 H 0.078 0.922 34 H 0.109 0.891 35 H 0.117 0.883 36 H 0.053 0.947 37 H 0.093 0.907 38 H 0.060 0.940 39 H 0.081 0.919 40 H 0.094 0.906 41 H -0.002 1.002 42 H 0.009 0.991 43 H 0.070 0.930 44 H 0.132 0.868 45 H 0.150 0.850 46 H 0.073 0.927 47 H 0.059 0.941 48 H 0.056 0.944 49 H 0.131 0.869 50 H 0.071 0.929 51 H 0.059 0.941 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -9.578 -17.115 -15.704 25.125 hybrid contribution 1.179 1.036 0.319 1.602 sum -8.399 -16.079 -15.385 23.786 Atomic orbital electron populations 1.25703 0.96801 0.99632 0.98794 1.23134 0.94662 1.01678 1.02065 1.18232 0.84328 1.01382 0.94585 0.86890 1.21628 0.95532 1.01296 0.96201 1.21599 0.95117 1.01854 0.95426 1.22425 1.00110 0.96428 0.88206 1.58734 1.10233 1.50415 0.97562 1.22549 0.88627 0.93731 0.96330 1.74495 1.26140 1.12266 1.06319 1.73973 1.04377 1.22970 1.14853 1.25407 0.98855 0.89287 0.92312 1.19793 0.90351 1.00705 0.90516 0.88875 1.21603 1.00678 1.00751 0.94689 1.18816 0.94070 0.90590 0.94958 1.21522 1.12258 0.99496 1.23310 0.90631 1.25975 1.00853 0.95136 0.97801 1.70140 1.40815 1.04053 1.42603 0.85518 0.78943 0.77252 0.79467 1.18690 1.21610 1.18979 1.46256 1.20916 1.27150 1.21385 1.21751 0.89029 0.86995 1.03001 1.22610 0.91727 0.89902 0.97973 1.87746 1.38646 1.31665 1.72925 1.22993 0.87277 1.02385 0.94344 1.21945 0.83020 0.99830 0.99382 0.73876 0.88880 0.92237 0.89066 0.88299 0.94735 0.90669 0.93967 0.91854 0.90588 1.00213 0.99117 0.92980 0.86779 0.85043 0.92743 0.94070 0.94380 0.86919 0.92886 0.94081 0.91174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.07 19.25 74.32 1.43 -1.63 16 2 C -0.21 -4.01 12.56 31.13 0.39 -3.62 16 3 C 0.03 0.57 2.73 -12.55 -0.03 0.53 16 4 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 5 C -0.11 -1.48 5.24 30.67 0.16 -1.32 16 6 C -0.10 -1.31 6.10 30.65 0.19 -1.12 16 7 C 0.05 1.15 5.39 86.33 0.47 1.61 16 8 N -0.44 -10.93 4.63 -706.15 -3.27 -14.20 16 9 C 0.34 11.44 6.72 260.11 1.75 13.18 16 10 N -0.35 -14.42 11.68 -58.00 -0.68 -15.10 16 11 N -0.32 -14.79 12.18 -49.54 -0.60 -15.40 16 12 C 0.21 8.47 6.58 137.64 0.91 9.38 16 13 C 0.01 0.30 2.71 -11.54 -0.03 0.27 16 14 H 0.09 3.42 7.10 -2.38 -0.02 3.40 16 15 C -0.12 -4.46 8.98 71.98 0.65 -3.82 16 16 C 0.05 2.85 4.43 29.85 0.13 2.98 16 17 C -0.53 -28.59 8.41 25.60 0.22 -28.38 16 18 H 0.08 3.76 7.06 -2.91 -0.02 3.74 16 19 C 0.00 0.00 5.46 84.65 0.46 0.46 16 20 N -0.94 -57.30 13.29 21.45 0.28 -57.02 16 21 Si 0.96 43.16 29.54 68.60 2.03 45.19 16 22 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 23 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 24 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 25 N -0.46 -15.09 2.81 -514.85 -1.45 -16.54 16 26 C 0.11 2.81 6.14 86.38 0.53 3.34 16 27 C 0.06 1.43 6.26 71.98 0.45 1.88 16 28 O -0.39 -9.05 10.70 -148.98 -1.59 -10.65 16 29 C 0.03 0.47 11.01 113.37 1.25 1.72 16 30 C 0.09 2.02 4.32 86.33 0.37 2.40 16 31 H 0.24 2.04 7.80 -4.41 -0.03 2.01 16 32 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.07 1.61 6.77 -2.39 -0.02 1.59 16 38 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 40 H 0.08 2.81 6.95 -2.39 -0.02 2.80 16 41 H -0.02 -1.20 8.14 -2.39 -0.02 -1.22 16 42 H -0.01 -0.58 8.14 -2.38 -0.02 -0.60 16 43 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 44 H 0.11 2.59 7.51 -2.39 -0.02 2.57 16 45 H 0.13 2.65 8.10 -2.39 -0.02 2.63 16 46 H 0.05 1.35 6.81 -2.39 -0.02 1.33 16 47 H 0.04 1.29 8.14 -2.38 -0.02 1.27 16 48 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 49 H 0.11 1.49 8.14 -2.39 -0.02 1.48 16 50 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 51 H 0.04 1.14 8.06 -2.39 -0.02 1.12 16 52 H 0.07 1.83 8.10 -2.38 -0.02 1.81 16 Total: -1.00 -74.32 424.99 4.88 -69.44 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: 0.88 Total: 16.41 kcal Atomic # 6 Polarization: -11.41 SS G_CDS: 9.28 Total: -2.13 kcal Atomic # 7 Polarization: -112.54 SS G_CDS: -5.71 Total: -118.25 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: -1.59 Total: -10.65 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Total: -74.32 4.88 -69.44 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341939359.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.972 kcal (2) G-P(sol) polarization free energy of solvation -74.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds