Wall clock time and date at job start Wed Apr 1 2020 04:50:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 H 1.08991 * 109.50301 * 73.92337 * 3 2 1 5 5 C 1.53123 * 109.49799 * 193.99824 * 3 2 1 6 6 C 1.53124 * 109.20922 * 177.56359 * 5 3 2 7 7 C 1.53043 * 109.27316 * 302.43913 * 6 5 3 8 8 N 1.46843 * 109.57568 * 59.08530 * 7 6 5 9 9 C 1.38582 * 111.00213 * 174.18863 * 8 7 6 10 10 N 1.31217 * 126.46850 * 88.28051 * 9 8 7 11 11 N 1.28531 * 109.85773 * 179.82553 * 10 9 8 12 12 C 1.30299 * 110.05270 * 0.45466 * 11 10 9 13 13 C 1.50699 * 126.34902 * 179.76328 * 12 11 10 14 14 H 1.08996 * 109.47162 * 179.97438 * 13 12 11 15 15 C 1.53006 * 109.46894 * 299.96037 * 13 12 11 16 16 C 1.53003 * 109.46993 * 59.95433 * 13 12 11 17 17 C 1.50700 * 109.46820 * 174.99966 * 16 13 12 18 18 H 1.07998 * 120.00341 * 0.02562 * 17 16 13 19 19 C 1.37877 * 119.99654 * 180.02562 * 17 16 13 20 20 N 1.31519 * 120.00452 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00077 * 180.02562 * 19 17 16 22 22 H 1.48510 * 109.46869 * 0.02562 * 21 19 17 23 23 H 1.48495 * 109.47230 * 119.99960 * 21 19 17 24 24 H 1.48498 * 109.47488 * 240.00337 * 21 19 17 25 25 N 1.36444 * 126.47431 * 268.60009 * 9 8 7 26 26 C 1.46508 * 127.13806 * 359.97197 * 25 9 8 27 27 C 1.53003 * 109.46639 * 95.91556 * 26 25 9 28 28 O 1.42904 * 109.46832 * 185.13438 * 27 26 25 29 29 C 1.42895 * 114.00075 * 180.02562 * 28 27 26 30 30 C 1.46842 * 111.19908 * 298.28786 * 8 7 6 31 31 H 4.18785 * 15.03315 * 0.02562 * 4 2 1 32 32 H 1.08994 * 109.52417 * 297.49740 * 5 3 2 33 33 H 1.08998 * 109.52234 * 57.62590 * 5 3 2 34 34 H 1.08993 * 109.50255 * 62.32180 * 6 5 3 35 35 H 1.08999 * 109.49801 * 182.43989 * 6 5 3 36 36 H 1.08999 * 109.41243 * 299.06815 * 7 6 5 37 37 H 1.09005 * 109.45257 * 179.12931 * 7 6 5 38 38 H 1.09002 * 109.46583 * 180.02562 * 15 13 12 39 39 H 1.08993 * 109.46741 * 299.99628 * 15 13 12 40 40 H 1.08996 * 109.47396 * 59.99923 * 15 13 12 41 41 H 1.09001 * 109.47698 * 295.00296 * 16 13 12 42 42 H 1.09006 * 109.46703 * 55.00419 * 16 13 12 43 43 H 0.96995 * 120.00270 * 180.02562 * 20 19 17 44 44 H 1.09000 * 109.46990 * 215.91564 * 26 25 9 45 45 H 1.08998 * 109.47074 * 335.91624 * 26 25 9 46 46 H 1.08999 * 109.47280 * 305.13415 * 27 26 25 47 47 H 1.08994 * 109.47146 * 65.13781 * 27 26 25 48 48 H 1.09004 * 109.47283 * 180.02562 * 29 28 27 49 49 H 1.09003 * 109.47176 * 299.99794 * 29 28 27 50 50 H 1.09002 * 109.47378 * 60.00089 * 29 28 27 51 51 H 1.08997 * 109.46741 * 301.72336 * 30 8 7 52 52 H 1.09002 * 109.46209 * 181.75893 * 30 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0100 -0.2837 -0.9872 5 6 3.1565 1.4014 0.3492 6 6 4.6865 1.3802 0.4070 7 6 5.1387 0.3408 1.4354 8 7 4.6257 -0.9818 1.0564 9 6 5.1242 -1.9667 1.8942 10 7 4.5985 -2.3653 3.0285 11 7 5.3204 -3.2974 3.5405 12 6 6.3462 -3.5399 2.7745 13 6 7.4289 -4.5572 3.0271 14 1 8.1508 -4.5298 2.2110 15 6 8.1363 -4.2327 4.3445 16 6 6.8075 -5.9528 3.1123 17 6 7.9005 -6.9822 3.2420 18 1 8.9348 -6.6720 3.2621 19 6 7.5801 -8.3199 3.3350 20 7 6.3206 -8.6978 3.3100 21 14 8.9348 -9.5959 3.4964 22 1 10.2558 -8.9174 3.5007 23 1 8.7599 -10.3456 4.7663 24 1 8.8658 -10.5389 2.3513 25 7 6.2576 -2.7008 1.6985 26 6 7.1867 -2.6093 0.5694 27 6 8.3560 -1.6963 0.9439 28 8 9.1993 -1.5112 -0.1948 29 6 10.3284 -0.6699 0.0488 30 6 3.1574 -0.9975 1.0412 31 1 -1.0500 0.0003 -0.0006 32 1 2.8306 2.1085 -0.4137 33 1 2.7594 1.7027 1.3185 34 1 5.0841 1.1179 -0.5733 35 1 5.0533 2.3646 0.6977 36 1 4.7531 0.6120 2.4182 37 1 6.2279 0.3123 1.4678 38 1 8.9197 -4.9683 4.5269 39 1 8.5789 -3.2385 4.2838 40 1 7.4145 -4.2599 5.1608 41 1 6.1527 -6.0066 3.9821 42 1 6.2292 -6.1487 2.2094 43 1 6.0951 -9.6389 3.3758 44 1 7.5643 -3.6030 0.3283 45 1 6.6673 -2.1981 -0.2961 46 1 7.9721 -0.7306 1.2726 47 1 8.9296 -2.1529 1.7504 48 1 10.9177 -0.5792 -0.8637 49 1 9.9858 0.3172 0.3592 50 1 10.9429 -1.1056 0.8367 51 1 2.7810 -0.7201 2.0258 52 1 2.8075 -1.9982 0.7876 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001341939360.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:50:46 Heat of formation + Delta-G solvation = 62.500216 kcal Electronic energy + Delta-G solvation = -31322.727991 eV Core-core repulsion = 27324.310085 eV Total energy + Delta-G solvation = -3998.417905 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -44.14772 -40.36404 -39.07926 -37.18838 -36.33248 -35.56991 -34.25420 -33.54779 -31.23620 -30.92773 -30.06817 -28.83929 -27.30211 -26.02814 -25.72019 -24.87316 -24.68234 -23.58986 -22.24544 -21.15776 -20.51676 -19.28642 -18.66672 -18.28532 -17.70340 -17.28607 -17.13741 -16.80958 -16.50057 -16.19943 -15.89233 -15.78459 -15.54404 -15.15509 -14.93320 -14.83816 -14.77951 -14.43143 -14.30228 -13.66263 -13.65186 -13.40651 -13.04076 -12.86218 -12.82424 -12.77832 -12.66750 -12.45631 -12.30649 -12.24999 -12.22140 -12.07455 -11.90072 -11.82112 -11.58243 -11.48782 -11.22845 -11.16814 -11.12729 -10.98288 -10.73964 -10.55819 -10.39886 -9.64661 -8.16366 -6.28030 0.62296 0.99790 1.43755 1.44464 1.57175 1.72844 1.80911 1.89020 2.39617 2.43577 2.89620 3.17959 3.35606 3.44230 3.54757 3.68140 3.75774 3.81153 3.84672 3.95268 4.01151 4.14621 4.19839 4.22842 4.31928 4.38740 4.40211 4.47990 4.49177 4.55427 4.55790 4.60097 4.66314 4.74726 4.79202 4.86065 4.87610 4.97194 5.06962 5.07780 5.12427 5.14914 5.16588 5.34075 5.37944 5.45006 5.48480 5.60462 5.68008 5.83369 6.01796 6.12337 6.19999 6.67990 6.87878 7.41246 7.66616 8.96379 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010652 B = 0.003006 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2628.006480 B = 9311.862030 C =11105.983238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.216 4.216 3 C 0.032 3.968 4 H 0.109 0.891 5 C -0.108 4.108 6 C -0.103 4.103 7 C 0.057 3.943 8 N -0.447 5.447 9 C 0.345 3.655 10 N -0.349 5.349 11 N -0.323 5.323 12 C 0.210 3.790 13 C 0.008 3.992 14 H 0.093 0.907 15 C -0.117 4.117 16 C 0.050 3.950 17 C -0.526 4.526 18 H 0.077 0.923 19 C -0.003 4.003 20 N -0.937 5.937 21 Si 0.966 3.034 22 H -0.252 1.252 23 H -0.284 1.284 24 H -0.282 1.282 25 N -0.463 5.463 26 C 0.109 3.891 27 C 0.062 3.938 28 O -0.399 6.399 29 C 0.026 3.974 30 C 0.085 3.915 31 H 0.245 0.755 32 H 0.092 0.908 33 H 0.062 0.938 34 H 0.087 0.913 35 H 0.103 0.897 36 H 0.039 0.961 37 H 0.082 0.918 38 H 0.075 0.925 39 H 0.063 0.937 40 H 0.042 0.958 41 H -0.009 1.009 42 H -0.022 1.022 43 H 0.261 0.739 44 H 0.101 0.899 45 H 0.124 0.876 46 H 0.063 0.937 47 H 0.057 0.943 48 H 0.105 0.895 49 H 0.055 0.945 50 H 0.047 0.953 51 H 0.044 0.956 52 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.826 25.654 -10.663 27.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.217 4.217 3 C 0.014 3.986 4 H 0.127 0.873 5 C -0.146 4.146 6 C -0.141 4.141 7 C -0.070 4.070 8 N -0.173 5.173 9 C -0.012 4.012 10 N -0.193 5.193 11 N -0.162 5.162 12 C -0.059 4.059 13 C -0.013 4.013 14 H 0.111 0.889 15 C -0.175 4.175 16 C 0.012 3.988 17 C -0.564 4.564 18 H 0.095 0.905 19 C -0.200 4.200 20 N -0.577 5.577 21 Si 0.791 3.209 22 H -0.175 1.175 23 H -0.210 1.210 24 H -0.208 1.208 25 N -0.157 5.157 26 C -0.014 4.014 27 C -0.016 4.016 28 O -0.318 6.318 29 C -0.070 4.070 30 C -0.042 4.042 31 H 0.261 0.739 32 H 0.110 0.890 33 H 0.080 0.920 34 H 0.106 0.894 35 H 0.122 0.878 36 H 0.057 0.943 37 H 0.101 0.899 38 H 0.094 0.906 39 H 0.082 0.918 40 H 0.061 0.939 41 H 0.010 0.990 42 H -0.004 1.004 43 H 0.070 0.930 44 H 0.120 0.880 45 H 0.142 0.858 46 H 0.081 0.919 47 H 0.075 0.925 48 H 0.123 0.877 49 H 0.074 0.926 50 H 0.066 0.934 51 H 0.063 0.937 52 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.924 25.282 -10.161 27.263 hybrid contribution 0.330 -1.105 0.271 1.184 sum 1.254 24.177 -9.890 26.152 Atomic orbital electron populations 1.25713 0.96826 0.99047 0.99404 1.23181 0.94745 1.01933 1.01799 1.18247 0.84276 0.96233 0.99866 0.87279 1.21627 0.95845 0.94250 1.02836 1.21613 0.94830 0.98197 0.99451 1.22444 1.00406 0.85393 0.98724 1.58715 1.09994 1.02848 1.45754 1.22535 0.88524 0.97389 0.92738 1.74492 1.25810 1.11851 1.07101 1.73971 1.03784 1.12275 1.26137 1.25410 0.99244 0.95606 0.85644 1.19782 0.91072 0.90107 1.00304 0.88889 1.21593 1.00081 1.01143 0.94725 1.18857 0.95325 0.90087 0.94548 1.21589 0.93737 0.91470 1.49604 0.90463 1.26016 0.97709 1.01342 0.94944 1.70160 1.19196 1.16725 1.51662 0.85381 0.79628 0.78546 0.77391 1.17540 1.20964 1.20827 1.46228 1.20900 1.28520 1.20024 1.21751 0.89668 1.03176 0.86778 1.22584 0.91165 0.98727 0.89155 1.87793 1.38952 1.70701 1.34322 1.23002 0.87179 0.93388 1.03417 1.21922 0.83336 0.99967 0.98998 0.73873 0.88990 0.91966 0.89391 0.87818 0.94261 0.89935 0.90604 0.91799 0.93927 0.99048 1.00383 0.92991 0.88046 0.85833 0.91926 0.92524 0.87693 0.92626 0.93426 0.93736 0.92157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.39 19.25 74.32 1.43 -1.96 16 2 C -0.22 -4.37 12.56 31.13 0.39 -3.98 16 3 C 0.03 0.59 2.73 -12.55 -0.03 0.55 16 4 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 5 C -0.11 -1.42 5.24 30.68 0.16 -1.26 16 6 C -0.10 -1.16 6.10 30.65 0.19 -0.97 16 7 C 0.06 1.04 5.39 86.33 0.47 1.51 16 8 N -0.45 -11.07 4.63 -706.17 -3.27 -14.34 16 9 C 0.35 11.48 6.71 260.12 1.75 13.23 16 10 N -0.35 -14.45 11.69 -58.01 -0.68 -15.13 16 11 N -0.32 -14.80 12.18 -49.53 -0.60 -15.40 16 12 C 0.21 8.46 6.58 137.64 0.91 9.37 16 13 C 0.01 0.34 2.71 -11.54 -0.03 0.31 16 14 H 0.09 3.41 7.09 -2.39 -0.02 3.40 16 15 C -0.12 -4.31 8.99 71.98 0.65 -3.66 16 16 C 0.05 2.68 4.43 29.85 0.13 2.82 16 17 C -0.53 -28.79 8.41 25.60 0.22 -28.57 16 18 H 0.08 3.87 7.06 -2.91 -0.02 3.85 16 19 C 0.00 -0.15 5.46 84.65 0.46 0.31 16 20 N -0.94 -58.24 13.29 21.45 0.28 -57.95 16 21 Si 0.97 43.64 29.54 68.60 2.03 45.67 16 22 H -0.25 -10.47 7.11 99.48 0.71 -9.76 16 23 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 24 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 25 N -0.46 -15.14 2.81 -514.83 -1.45 -16.59 16 26 C 0.11 2.70 6.15 86.38 0.53 3.23 16 27 C 0.06 1.26 6.26 71.98 0.45 1.71 16 28 O -0.40 -7.86 10.70 -148.98 -1.59 -9.46 16 29 C 0.03 0.34 11.01 113.37 1.25 1.58 16 30 C 0.09 2.14 4.33 86.33 0.37 2.52 16 31 H 0.24 2.43 7.80 -4.42 -0.03 2.40 16 32 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.08 1.42 6.75 -2.38 -0.02 1.40 16 38 H 0.08 2.76 6.95 -2.39 -0.02 2.75 16 39 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 40 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 41 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 42 H -0.02 -1.34 8.14 -2.38 -0.02 -1.35 16 43 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 44 H 0.10 2.67 7.50 -2.39 -0.02 2.65 16 45 H 0.12 2.72 8.10 -2.39 -0.02 2.70 16 46 H 0.06 1.15 6.79 -2.39 -0.02 1.13 16 47 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 48 H 0.10 1.02 8.14 -2.38 -0.02 1.00 16 49 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 50 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 51 H 0.04 1.26 8.06 -2.39 -0.02 1.24 16 52 H 0.06 1.78 8.10 -2.39 -0.02 1.77 16 Total: -1.00 -76.27 424.95 4.88 -71.39 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: 0.88 Total: 15.06 kcal Atomic # 6 Polarization: -12.54 SS G_CDS: 9.28 Total: -3.26 kcal Atomic # 7 Polarization: -113.69 SS G_CDS: -5.71 Total: -119.41 kcal Atomic # 8 Polarization: -7.86 SS G_CDS: -1.59 Total: -9.46 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -76.27 4.88 -71.39 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341939360.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.893 kcal (2) G-P(sol) polarization free energy of solvation -76.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.392 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds