Wall clock time and date at job start Wed Apr 1 2020 04:50:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 H 1.09002 * 109.53635 * 346.56753 * 3 2 1 5 5 C 1.53122 * 109.50477 * 226.46948 * 3 2 1 6 6 C 1.53114 * 109.16377 * 182.40581 * 5 3 2 7 7 C 1.53030 * 109.28035 * 57.65328 * 6 5 3 8 8 N 1.46844 * 109.52515 * 300.82425 * 7 6 5 9 9 C 1.38584 * 111.00238 * 185.83841 * 8 7 6 10 10 N 1.31217 * 126.47367 * 299.57610 * 9 8 7 11 11 N 1.28519 * 109.85986 * 180.02562 * 10 9 8 12 12 C 1.30291 * 110.05842 * 0.02562 * 11 10 9 13 13 C 1.50703 * 126.35081 * 180.02562 * 12 11 10 14 14 H 1.08998 * 109.47127 * 180.02562 * 13 12 11 15 15 C 1.52999 * 109.47566 * 60.01749 * 13 12 11 16 16 C 1.53000 * 109.46720 * 300.01644 * 13 12 11 17 17 C 1.50705 * 109.47323 * 185.00033 * 16 13 12 18 18 H 1.07996 * 119.99547 * 0.02562 * 17 16 13 19 19 C 1.37875 * 120.00066 * 180.02562 * 17 16 13 20 20 N 1.31515 * 119.99551 * 179.97438 * 19 17 16 21 21 Si 1.86799 * 120.00215 * 359.97438 * 19 17 16 22 22 H 1.48504 * 109.46654 * 89.99998 * 21 19 17 23 23 H 1.48493 * 109.47060 * 210.00100 * 21 19 17 24 24 H 1.48496 * 109.47172 * 330.00584 * 21 19 17 25 25 N 1.36453 * 126.47109 * 119.89014 * 9 8 7 26 26 C 1.46494 * 127.14123 * 0.02562 * 25 9 8 27 27 C 1.53002 * 109.47139 * 268.78591 * 26 25 9 28 28 O 1.42899 * 109.47046 * 181.05336 * 27 26 25 29 29 C 1.42898 * 113.99914 * 180.02562 * 28 27 26 30 30 C 1.46850 * 111.20083 * 61.73870 * 8 7 6 31 31 H 4.18836 * 15.02399 * 0.02562 * 4 2 1 32 32 H 1.09006 * 109.52107 * 62.49887 * 5 3 2 33 33 H 1.09000 * 109.52344 * 302.31211 * 5 3 2 34 34 H 1.09001 * 109.50077 * 297.71404 * 6 5 3 35 35 H 1.08999 * 109.53859 * 177.61880 * 6 5 3 36 36 H 1.08997 * 109.46424 * 180.80330 * 7 6 5 37 37 H 1.08999 * 109.45508 * 60.82972 * 7 6 5 38 38 H 1.08994 * 109.47404 * 180.02562 * 15 13 12 39 39 H 1.09008 * 109.46527 * 300.00605 * 15 13 12 40 40 H 1.08999 * 109.46885 * 60.00026 * 15 13 12 41 41 H 1.09004 * 109.47547 * 305.00602 * 16 13 12 42 42 H 1.09002 * 109.47114 * 65.00326 * 16 13 12 43 43 H 0.97001 * 119.99833 * 179.97438 * 20 19 17 44 44 H 1.09002 * 109.47471 * 28.78904 * 26 25 9 45 45 H 1.09004 * 109.47433 * 148.78890 * 26 25 9 46 46 H 1.08997 * 109.46928 * 301.05146 * 27 26 25 47 47 H 1.08998 * 109.46873 * 61.05913 * 27 26 25 48 48 H 1.09005 * 109.47143 * 180.02562 * 29 28 27 49 49 H 1.08997 * 109.47222 * 300.00025 * 29 28 27 50 50 H 1.08996 * 109.47100 * 60.00207 * 29 28 27 51 51 H 1.08997 * 109.46189 * 58.27612 * 30 8 7 52 52 H 1.08994 * 109.46182 * 178.24743 * 30 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0109 -0.9983 0.2386 5 6 3.1568 0.9950 1.0464 6 6 4.6867 1.0337 0.9983 7 6 5.1383 1.4177 -0.4125 8 7 4.6251 0.4359 -1.3763 9 6 5.1231 0.6796 -2.6465 10 7 4.9544 1.7716 -3.3542 11 7 5.5529 1.6554 -4.4856 12 6 6.1336 0.4919 -4.5665 13 6 6.9364 -0.0267 -5.7318 14 1 7.2954 -1.0311 -5.5074 15 6 8.1297 0.8978 -5.9808 16 6 6.0538 -0.0679 -6.9809 17 6 6.8181 -0.7002 -8.1154 18 1 7.8318 -1.0391 -7.9608 19 6 6.2232 -0.8459 -9.3507 20 7 6.8905 -1.3973 -10.3408 21 14 4.4696 -0.2603 -9.6179 22 1 4.4836 1.1549 -10.0678 23 1 3.8189 -1.1026 -10.6533 24 1 3.7126 -0.3675 -8.3449 25 7 5.8764 -0.1731 -3.3997 26 6 6.3191 -1.5208 -3.0337 27 6 7.6885 -1.4414 -2.3560 28 8 8.1313 -2.7581 -2.0211 29 6 9.4074 -2.7964 -1.3791 30 6 3.1568 0.4147 -1.3820 31 1 -1.0499 -0.0011 -0.0002 32 1 2.8314 0.6797 2.0379 33 1 2.7603 1.9871 0.8303 34 1 5.0837 0.0509 1.2527 35 1 5.0553 1.7708 1.7117 36 1 6.2274 1.4322 -0.4539 37 1 4.7522 2.4063 -0.6608 38 1 8.7100 0.5230 -6.8238 39 1 7.7705 1.9023 -6.2052 40 1 8.7584 0.9272 -5.0909 41 1 5.1587 -0.6546 -6.7742 42 1 5.7672 0.9469 -7.2570 43 1 6.4719 -1.5002 -11.2098 44 1 5.5990 -1.9658 -2.3470 45 1 6.3929 -2.1352 -3.9310 46 1 8.4041 -0.9794 -3.0360 47 1 7.6105 -0.8425 -1.4486 48 1 9.6720 -3.8305 -1.1582 49 1 10.1590 -2.3624 -2.0385 50 1 9.3647 -2.2258 -0.4515 51 1 2.7801 1.4080 -1.6258 52 1 2.8067 -0.2994 -2.1274 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001341939362.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:50:53 Heat of formation + Delta-G solvation = 83.038132 kcal Electronic energy + Delta-G solvation = -31374.509649 eV Core-core repulsion = 27376.982335 eV Total energy + Delta-G solvation = -3997.527314 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.84802 -39.49509 -38.22932 -35.70049 -35.19928 -34.53607 -32.89504 -32.14805 -30.49528 -29.90989 -28.79180 -27.49396 -26.57148 -24.93603 -24.12518 -24.01590 -23.53021 -21.97738 -21.05396 -20.19253 -19.08919 -18.49676 -17.44104 -16.90403 -16.75669 -16.26788 -16.18969 -15.78562 -15.31414 -15.10766 -14.75009 -14.56125 -14.28189 -14.17736 -14.04860 -13.82749 -13.52648 -13.38294 -12.90994 -12.68077 -12.50917 -12.08185 -11.97643 -11.83628 -11.63823 -11.52268 -11.45596 -11.29674 -11.20941 -11.13608 -11.12047 -10.85667 -10.50319 -10.41436 -10.31232 -10.12802 -10.02062 -9.96570 -9.94156 -9.80922 -9.19890 -8.93984 -8.63419 -8.54687 -6.06553 -4.05236 1.83903 2.14727 2.55129 2.58118 3.09326 3.31400 3.34171 3.41074 3.47421 3.80041 4.09277 4.42245 4.45925 4.50277 4.55966 4.62383 4.70891 4.75939 4.86192 5.00457 5.03092 5.08298 5.12691 5.12995 5.17915 5.23542 5.27509 5.29747 5.40734 5.42879 5.47825 5.50667 5.56063 5.64574 5.66141 5.73147 5.76548 5.88889 5.95511 5.98849 6.12177 6.19415 6.48242 6.58072 6.64942 6.69802 6.80579 6.95804 7.17545 7.27066 7.35004 7.35826 7.73136 8.47235 8.95720 8.98786 9.55877 11.06035 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009279 B = 0.003359 C = 0.002767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3016.838302 B = 8334.845117 C =10115.149296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.182 4.182 3 C 0.026 3.974 4 H 0.102 0.898 5 C -0.113 4.113 6 C -0.115 4.115 7 C 0.065 3.935 8 N -0.460 5.460 9 C 0.322 3.678 10 N -0.307 5.307 11 N -0.286 5.286 12 C 0.219 3.781 13 C 0.005 3.995 14 H 0.080 0.920 15 C -0.127 4.127 16 C 0.001 3.999 17 C -0.519 4.519 18 H 0.077 0.923 19 C 0.072 3.928 20 N -0.901 5.901 21 Si 0.875 3.125 22 H -0.274 1.274 23 H -0.288 1.288 24 H -0.267 1.267 25 N -0.464 5.464 26 C 0.114 3.886 27 C 0.053 3.947 28 O -0.385 6.385 29 C 0.034 3.966 30 C 0.076 3.924 31 H 0.218 0.782 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.055 0.945 38 H 0.081 0.919 39 H 0.061 0.939 40 H 0.033 0.967 41 H 0.014 0.986 42 H 0.027 0.973 43 H 0.264 0.736 44 H 0.107 0.893 45 H 0.108 0.892 46 H 0.058 0.942 47 H 0.056 0.944 48 H 0.089 0.911 49 H 0.044 0.956 50 H 0.041 0.959 51 H 0.058 0.942 52 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.556 0.375 26.597 26.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.182 4.182 3 C 0.008 3.992 4 H 0.120 0.880 5 C -0.150 4.150 6 C -0.153 4.153 7 C -0.062 4.062 8 N -0.185 5.185 9 C -0.034 4.034 10 N -0.151 5.151 11 N -0.125 5.125 12 C -0.048 4.048 13 C -0.016 4.016 14 H 0.099 0.901 15 C -0.185 4.185 16 C -0.037 4.037 17 C -0.556 4.556 18 H 0.095 0.905 19 C -0.130 4.130 20 N -0.539 5.539 21 Si 0.702 3.298 22 H -0.200 1.200 23 H -0.214 1.214 24 H -0.191 1.191 25 N -0.158 5.158 26 C -0.010 4.010 27 C -0.024 4.024 28 O -0.303 6.303 29 C -0.062 4.062 30 C -0.051 4.051 31 H 0.235 0.765 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.094 0.906 35 H 0.096 0.904 36 H 0.095 0.905 37 H 0.074 0.926 38 H 0.100 0.900 39 H 0.080 0.920 40 H 0.052 0.948 41 H 0.032 0.968 42 H 0.046 0.954 43 H 0.073 0.927 44 H 0.125 0.875 45 H 0.126 0.874 46 H 0.077 0.923 47 H 0.074 0.926 48 H 0.108 0.892 49 H 0.063 0.937 50 H 0.060 0.940 51 H 0.076 0.924 52 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.960 1.076 26.153 26.342 hybrid contribution -0.863 -0.182 -0.030 0.882 sum -3.823 0.893 26.123 26.417 Atomic orbital electron populations 1.24919 0.95903 1.00905 0.99976 1.22803 0.93994 1.00481 1.00930 1.18264 0.84345 1.01400 0.95210 0.87998 1.21628 0.95609 0.99249 0.98536 1.21619 0.95261 1.02948 0.95431 1.22164 1.00125 0.93249 0.90630 1.58442 1.09073 1.50537 1.00463 1.22078 0.99990 0.88587 0.92711 1.74559 1.19849 1.19663 1.01034 1.74072 1.11199 1.15653 1.11607 1.25743 1.00495 0.90068 0.88516 1.19825 0.94472 0.98342 0.88930 0.90150 1.21692 0.96109 0.99820 1.00862 1.19598 0.94771 0.97855 0.91494 1.21003 1.01430 1.39687 0.93529 0.90509 1.24931 0.97580 0.94532 0.95940 1.69897 1.37348 1.44318 1.02355 0.86849 0.85599 0.79138 0.78200 1.20005 1.21410 1.19144 1.46238 1.40212 1.14924 1.14436 1.21521 0.96058 0.80525 1.02855 1.22698 0.95315 0.85224 0.99211 1.87811 1.36238 1.26589 1.79658 1.22768 0.84450 1.02948 0.96083 1.22085 0.84216 1.02217 0.96609 0.76549 0.90950 0.91329 0.90599 0.90363 0.90507 0.92627 0.90002 0.92029 0.94832 0.96760 0.95443 0.92662 0.87458 0.87356 0.92347 0.92623 0.89236 0.93694 0.94049 0.92354 0.90100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.79 19.25 29.55 0.57 -1.22 16 2 C -0.18 -1.81 12.56 -37.12 -0.47 -2.28 16 3 C 0.03 0.24 2.73 -93.32 -0.25 -0.02 16 4 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 5 C -0.11 -0.83 5.24 -26.61 -0.14 -0.97 16 6 C -0.11 -0.79 6.09 -26.66 -0.16 -0.95 16 7 C 0.07 0.64 5.37 -3.84 -0.02 0.62 16 8 N -0.46 -5.44 4.67 -174.56 -0.82 -6.26 16 9 C 0.32 4.99 6.42 -318.87 -2.05 2.94 16 10 N -0.31 -5.74 12.19 30.32 0.37 -5.38 16 11 N -0.29 -5.88 12.18 32.99 0.40 -5.48 16 12 C 0.22 4.08 6.58 -154.01 -1.01 3.06 16 13 C 0.01 0.11 2.70 -91.77 -0.25 -0.14 16 14 H 0.08 1.47 6.98 -51.93 -0.36 1.11 16 15 C -0.13 -2.31 8.99 37.16 0.33 -1.97 16 16 C 0.00 0.03 3.50 -27.88 -0.10 -0.07 16 17 C -0.52 -14.14 8.96 -34.44 -0.31 -14.44 16 18 H 0.08 2.19 7.30 -52.49 -0.38 1.80 16 19 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 20 N -0.90 -27.19 13.96 55.43 0.77 -26.42 16 21 Si 0.87 22.07 27.47 -169.99 -4.67 17.40 16 22 H -0.27 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 24 H -0.27 -6.66 6.54 56.52 0.37 -6.29 16 25 N -0.46 -7.22 2.81 -114.08 -0.32 -7.54 16 26 C 0.11 1.43 6.23 -4.04 -0.03 1.41 16 27 C 0.05 0.60 6.26 37.16 0.23 0.83 16 28 O -0.39 -4.37 10.70 -35.23 -0.38 -4.75 16 29 C 0.03 0.28 11.01 101.05 1.11 1.39 16 30 C 0.08 0.87 4.63 -3.83 -0.02 0.85 16 31 H 0.22 1.22 7.80 -54.09 -0.42 0.79 16 32 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.08 0.76 8.10 -51.93 -0.42 0.34 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.08 1.57 6.95 -51.93 -0.36 1.21 16 39 H 0.06 1.16 8.14 -51.92 -0.42 0.74 16 40 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.01 0.35 7.20 -51.93 -0.37 -0.02 16 42 H 0.03 0.68 7.57 -51.93 -0.39 0.29 16 43 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 44 H 0.11 1.22 8.14 -51.93 -0.42 0.79 16 45 H 0.11 1.41 7.29 -51.93 -0.38 1.03 16 46 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 48 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 49 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 50 H 0.04 0.29 8.14 -51.93 -0.42 -0.14 16 51 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 52 H 0.08 1.02 8.10 -51.93 -0.42 0.60 16 LS Contribution 424.44 15.07 6.40 6.40 Total: -1.00 -33.09 424.44 -9.91 -43.01 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -9.02 Total: -1.99 kcal Atomic # 6 Polarization: -6.33 SS G_CDS: -2.65 Total: -8.98 kcal Atomic # 7 Polarization: -51.48 SS G_CDS: 0.41 Total: -51.07 kcal Atomic # 8 Polarization: -4.37 SS G_CDS: -0.38 Total: -4.75 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.67 Total: 17.40 kcal Total LS contribution 6.40 Total: 6.40 kcal Total: -33.09 -9.91 -43.01 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341939362.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.046 kcal (2) G-P(sol) polarization free energy of solvation -33.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds