Wall clock time and date at job start Wed Apr 1 2020 04:50:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 H 1.09002 * 109.53635 * 346.56753 * 3 2 1 5 5 C 1.53122 * 109.50477 * 226.46948 * 3 2 1 6 6 C 1.53114 * 109.16377 * 182.40581 * 5 3 2 7 7 C 1.53030 * 109.28035 * 57.65328 * 6 5 3 8 8 N 1.46844 * 109.52515 * 300.82425 * 7 6 5 9 9 C 1.38584 * 111.00238 * 185.83841 * 8 7 6 10 10 N 1.31217 * 126.47367 * 299.57610 * 9 8 7 11 11 N 1.28519 * 109.85986 * 180.02562 * 10 9 8 12 12 C 1.30291 * 110.05842 * 0.02562 * 11 10 9 13 13 C 1.50703 * 126.35081 * 180.02562 * 12 11 10 14 14 H 1.08998 * 109.47127 * 180.02562 * 13 12 11 15 15 C 1.52999 * 109.47566 * 60.01749 * 13 12 11 16 16 C 1.53000 * 109.46720 * 300.01644 * 13 12 11 17 17 C 1.50705 * 109.47323 * 185.00033 * 16 13 12 18 18 H 1.07996 * 119.99547 * 0.02562 * 17 16 13 19 19 C 1.37875 * 120.00066 * 180.02562 * 17 16 13 20 20 N 1.31515 * 119.99551 * 179.97438 * 19 17 16 21 21 Si 1.86799 * 120.00215 * 359.97438 * 19 17 16 22 22 H 1.48504 * 109.46654 * 89.99998 * 21 19 17 23 23 H 1.48493 * 109.47060 * 210.00100 * 21 19 17 24 24 H 1.48496 * 109.47172 * 330.00584 * 21 19 17 25 25 N 1.36453 * 126.47109 * 119.89014 * 9 8 7 26 26 C 1.46494 * 127.14123 * 0.02562 * 25 9 8 27 27 C 1.53002 * 109.47139 * 268.78591 * 26 25 9 28 28 O 1.42899 * 109.47046 * 181.05336 * 27 26 25 29 29 C 1.42898 * 113.99914 * 180.02562 * 28 27 26 30 30 C 1.46850 * 111.20083 * 61.73870 * 8 7 6 31 31 H 4.18836 * 15.02399 * 0.02562 * 4 2 1 32 32 H 1.09006 * 109.52107 * 62.49887 * 5 3 2 33 33 H 1.09000 * 109.52344 * 302.31211 * 5 3 2 34 34 H 1.09001 * 109.50077 * 297.71404 * 6 5 3 35 35 H 1.08999 * 109.53859 * 177.61880 * 6 5 3 36 36 H 1.08997 * 109.46424 * 180.80330 * 7 6 5 37 37 H 1.08999 * 109.45508 * 60.82972 * 7 6 5 38 38 H 1.08994 * 109.47404 * 180.02562 * 15 13 12 39 39 H 1.09008 * 109.46527 * 300.00605 * 15 13 12 40 40 H 1.08999 * 109.46885 * 60.00026 * 15 13 12 41 41 H 1.09004 * 109.47547 * 305.00602 * 16 13 12 42 42 H 1.09002 * 109.47114 * 65.00326 * 16 13 12 43 43 H 0.97001 * 119.99833 * 179.97438 * 20 19 17 44 44 H 1.09002 * 109.47471 * 28.78904 * 26 25 9 45 45 H 1.09004 * 109.47433 * 148.78890 * 26 25 9 46 46 H 1.08997 * 109.46928 * 301.05146 * 27 26 25 47 47 H 1.08998 * 109.46873 * 61.05913 * 27 26 25 48 48 H 1.09005 * 109.47143 * 180.02562 * 29 28 27 49 49 H 1.08997 * 109.47222 * 300.00025 * 29 28 27 50 50 H 1.08996 * 109.47100 * 60.00207 * 29 28 27 51 51 H 1.08997 * 109.46189 * 58.27612 * 30 8 7 52 52 H 1.08994 * 109.46182 * 178.24743 * 30 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0109 -0.9983 0.2386 5 6 3.1568 0.9950 1.0464 6 6 4.6867 1.0337 0.9983 7 6 5.1383 1.4177 -0.4125 8 7 4.6251 0.4359 -1.3763 9 6 5.1231 0.6796 -2.6465 10 7 4.9544 1.7716 -3.3542 11 7 5.5529 1.6554 -4.4856 12 6 6.1336 0.4919 -4.5665 13 6 6.9364 -0.0267 -5.7318 14 1 7.2954 -1.0311 -5.5074 15 6 8.1297 0.8978 -5.9808 16 6 6.0538 -0.0679 -6.9809 17 6 6.8181 -0.7002 -8.1154 18 1 7.8318 -1.0391 -7.9608 19 6 6.2232 -0.8459 -9.3507 20 7 6.8905 -1.3973 -10.3408 21 14 4.4696 -0.2603 -9.6179 22 1 4.4836 1.1549 -10.0678 23 1 3.8189 -1.1026 -10.6533 24 1 3.7126 -0.3675 -8.3449 25 7 5.8764 -0.1731 -3.3997 26 6 6.3191 -1.5208 -3.0337 27 6 7.6885 -1.4414 -2.3560 28 8 8.1313 -2.7581 -2.0211 29 6 9.4074 -2.7964 -1.3791 30 6 3.1568 0.4147 -1.3820 31 1 -1.0499 -0.0011 -0.0002 32 1 2.8314 0.6797 2.0379 33 1 2.7603 1.9871 0.8303 34 1 5.0837 0.0509 1.2527 35 1 5.0553 1.7708 1.7117 36 1 6.2274 1.4322 -0.4539 37 1 4.7522 2.4063 -0.6608 38 1 8.7100 0.5230 -6.8238 39 1 7.7705 1.9023 -6.2052 40 1 8.7584 0.9272 -5.0909 41 1 5.1587 -0.6546 -6.7742 42 1 5.7672 0.9469 -7.2570 43 1 6.4719 -1.5002 -11.2098 44 1 5.5990 -1.9658 -2.3470 45 1 6.3929 -2.1352 -3.9310 46 1 8.4041 -0.9794 -3.0360 47 1 7.6105 -0.8425 -1.4486 48 1 9.6720 -3.8305 -1.1582 49 1 10.1590 -2.3624 -2.0385 50 1 9.3647 -2.2258 -0.4515 51 1 2.7801 1.4080 -1.6258 52 1 2.8067 -0.2994 -2.1274 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001341939362.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:50:51 Heat of formation + Delta-G solvation = 65.148024 kcal Electronic energy + Delta-G solvation = -31375.285422 eV Core-core repulsion = 27376.982335 eV Total energy + Delta-G solvation = -3998.303088 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -44.18424 -40.35366 -39.07439 -37.27183 -36.31067 -35.61040 -34.31844 -33.53394 -31.25813 -30.94708 -30.30258 -29.20905 -27.31453 -25.92457 -25.67712 -24.84154 -24.56081 -23.52851 -22.19989 -21.20952 -20.45109 -19.28073 -19.09964 -18.33854 -17.69999 -17.41706 -17.07572 -16.79307 -16.35940 -16.19839 -15.89738 -15.76675 -15.60272 -15.27580 -14.97419 -14.92470 -14.72292 -14.66947 -14.38102 -13.79644 -13.62317 -13.43888 -13.12666 -13.00103 -12.85750 -12.80229 -12.73721 -12.50870 -12.31062 -12.24711 -12.06354 -11.92014 -11.87681 -11.80248 -11.73035 -11.59149 -11.31145 -11.21431 -11.15081 -10.99205 -10.76528 -10.75453 -10.07861 -9.99548 -8.29013 -6.30501 0.55661 0.98482 1.32045 1.34771 1.44853 1.65970 1.81236 1.88058 2.33970 2.40223 2.87591 3.06557 3.32604 3.42956 3.51390 3.66815 3.77573 3.81511 3.84958 3.96352 4.09139 4.14624 4.15446 4.23006 4.28785 4.31025 4.39828 4.43643 4.47853 4.53794 4.55463 4.61779 4.65754 4.70981 4.76739 4.86339 4.87924 4.94258 4.99489 5.07404 5.08055 5.11732 5.15441 5.21401 5.30696 5.36886 5.42239 5.51433 5.60068 5.65520 6.01878 6.11561 6.26655 6.66853 6.75184 7.33335 7.60571 8.86446 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009279 B = 0.003359 C = 0.002767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3016.838302 B = 8334.845117 C =10115.149296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.216 4.216 3 C 0.034 3.966 4 H 0.112 0.888 5 C -0.109 4.109 6 C -0.103 4.103 7 C 0.062 3.938 8 N -0.449 5.449 9 C 0.343 3.657 10 N -0.340 5.340 11 N -0.319 5.319 12 C 0.209 3.791 13 C 0.014 3.986 14 H 0.092 0.908 15 C -0.119 4.119 16 C 0.008 3.992 17 C -0.513 4.513 18 H 0.057 0.943 19 C 0.019 3.981 20 N -0.941 5.941 21 Si 0.930 3.070 22 H -0.271 1.271 23 H -0.280 1.280 24 H -0.264 1.264 25 N -0.458 5.458 26 C 0.110 3.890 27 C 0.063 3.937 28 O -0.402 6.402 29 C 0.027 3.973 30 C 0.080 3.920 31 H 0.244 0.756 32 H 0.090 0.910 33 H 0.060 0.940 34 H 0.087 0.913 35 H 0.100 0.900 36 H 0.079 0.921 37 H 0.041 0.959 38 H 0.067 0.933 39 H 0.050 0.950 40 H 0.062 0.938 41 H 0.006 0.994 42 H 0.015 0.985 43 H 0.266 0.734 44 H 0.123 0.877 45 H 0.102 0.898 46 H 0.051 0.949 47 H 0.067 0.933 48 H 0.104 0.896 49 H 0.045 0.955 50 H 0.056 0.944 51 H 0.040 0.960 52 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.177 -0.029 29.772 29.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.216 4.216 3 C 0.016 3.984 4 H 0.130 0.870 5 C -0.146 4.146 6 C -0.141 4.141 7 C -0.064 4.064 8 N -0.175 5.175 9 C -0.014 4.014 10 N -0.183 5.183 11 N -0.158 5.158 12 C -0.060 4.060 13 C -0.007 4.007 14 H 0.110 0.890 15 C -0.177 4.177 16 C -0.030 4.030 17 C -0.551 4.551 18 H 0.075 0.925 19 C -0.179 4.179 20 N -0.582 5.582 21 Si 0.755 3.245 22 H -0.196 1.196 23 H -0.206 1.206 24 H -0.189 1.189 25 N -0.151 5.151 26 C -0.012 4.012 27 C -0.015 4.015 28 O -0.320 6.320 29 C -0.069 4.069 30 C -0.048 4.048 31 H 0.260 0.740 32 H 0.109 0.891 33 H 0.079 0.921 34 H 0.106 0.894 35 H 0.119 0.881 36 H 0.097 0.903 37 H 0.059 0.941 38 H 0.086 0.914 39 H 0.069 0.931 40 H 0.081 0.919 41 H 0.024 0.976 42 H 0.033 0.967 43 H 0.075 0.925 44 H 0.141 0.859 45 H 0.121 0.879 46 H 0.069 0.931 47 H 0.085 0.915 48 H 0.122 0.878 49 H 0.064 0.936 50 H 0.075 0.925 51 H 0.058 0.942 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.573 0.666 29.351 29.575 hybrid contribution -0.663 -0.098 -0.921 1.139 sum -4.236 0.568 28.430 28.749 Atomic orbital electron populations 1.25709 0.96844 0.99867 0.98686 1.23202 0.94764 1.01534 1.02112 1.18230 0.84127 1.02319 0.93774 0.87007 1.21626 0.95855 0.98351 0.98788 1.21605 0.94801 1.04239 0.93454 1.22317 1.00218 0.92120 0.91769 1.58755 1.09245 1.50818 0.98729 1.22465 0.98082 0.87509 0.93339 1.74496 1.21148 1.21526 1.01172 1.73979 1.12102 1.16878 1.12824 1.25308 1.01065 0.90251 0.89329 1.19580 0.94107 0.99435 0.87596 0.89022 1.21594 0.95821 0.98689 1.01631 1.19431 0.94778 0.96310 0.92482 1.21252 1.00797 1.38616 0.94484 0.92527 1.25671 1.01213 0.95008 0.95985 1.70005 1.39098 1.46112 1.02969 0.85962 0.81410 0.78843 0.78242 1.19588 1.20560 1.18864 1.46296 1.39706 1.15636 1.13496 1.21735 0.97540 0.78820 1.03133 1.22537 0.94052 0.85561 0.99319 1.87785 1.37724 1.26381 1.80124 1.22986 0.83105 1.04301 0.96511 1.22045 0.83746 1.00774 0.98198 0.73982 0.89116 0.92106 0.89401 0.88144 0.90281 0.94077 0.91450 0.93090 0.91894 0.97581 0.96671 0.92464 0.85896 0.87945 0.93078 0.91503 0.87790 0.93585 0.92521 0.94198 0.91695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.12 19.25 74.32 1.43 -1.69 16 2 C -0.22 -3.98 12.56 31.12 0.39 -3.59 16 3 C 0.03 0.55 2.73 -12.55 -0.03 0.52 16 4 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 5 C -0.11 -1.32 5.24 30.67 0.16 -1.16 16 6 C -0.10 -1.10 6.09 30.64 0.19 -0.91 16 7 C 0.06 1.12 5.37 86.32 0.46 1.58 16 8 N -0.45 -10.05 4.67 -706.18 -3.30 -13.35 16 9 C 0.34 10.40 6.42 260.11 1.67 12.07 16 10 N -0.34 -12.79 12.19 -58.00 -0.71 -13.50 16 11 N -0.32 -13.22 12.18 -49.53 -0.60 -13.82 16 12 C 0.21 7.76 6.58 137.64 0.91 8.67 16 13 C 0.01 0.54 2.70 -11.54 -0.03 0.51 16 14 H 0.09 3.33 6.98 -2.39 -0.02 3.32 16 15 C -0.12 -4.34 8.99 71.98 0.65 -3.69 16 16 C 0.01 0.41 3.50 29.85 0.10 0.51 16 17 C -0.51 -28.51 8.96 25.60 0.23 -28.28 16 18 H 0.06 3.31 7.30 -2.91 -0.02 3.29 16 19 C 0.02 1.11 5.47 84.65 0.46 1.57 16 20 N -0.94 -57.84 13.96 21.45 0.30 -57.54 16 21 Si 0.93 45.93 27.47 68.60 1.88 47.81 16 22 H -0.27 -13.11 7.11 99.48 0.71 -12.41 16 23 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 24 H -0.26 -12.82 6.54 99.48 0.65 -12.16 16 25 N -0.46 -13.90 2.81 -514.85 -1.45 -15.35 16 26 C 0.11 2.61 6.23 86.38 0.54 3.15 16 27 C 0.06 1.30 6.26 71.98 0.45 1.75 16 28 O -0.40 -8.29 10.70 -148.98 -1.59 -9.88 16 29 C 0.03 0.38 11.01 113.37 1.25 1.62 16 30 C 0.08 1.78 4.63 86.33 0.40 2.18 16 31 H 0.24 2.12 7.80 -4.42 -0.03 2.09 16 32 H 0.09 0.83 8.14 -2.38 -0.02 0.81 16 33 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.08 1.40 8.10 -2.39 -0.02 1.38 16 37 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.07 2.62 6.95 -2.39 -0.02 2.61 16 39 H 0.05 1.94 8.14 -2.38 -0.02 1.92 16 40 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 41 H 0.01 0.29 7.20 -2.39 -0.02 0.27 16 42 H 0.01 0.76 7.57 -2.39 -0.02 0.74 16 43 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 44 H 0.12 2.54 8.14 -2.39 -0.02 2.52 16 45 H 0.10 2.58 7.29 -2.38 -0.02 2.56 16 46 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 47 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 48 H 0.10 1.14 8.14 -2.38 -0.02 1.12 16 49 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 50 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 51 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 52 H 0.06 1.63 8.10 -2.39 -0.02 1.61 16 Total: -1.00 -72.63 424.44 4.58 -68.05 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: 0.82 Total: 12.76 kcal Atomic # 6 Polarization: -14.41 SS G_CDS: 9.22 Total: -5.19 kcal Atomic # 7 Polarization: -107.80 SS G_CDS: -5.75 Total: -113.56 kcal Atomic # 8 Polarization: -8.29 SS G_CDS: -1.59 Total: -9.88 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 1.88 Total: 47.81 kcal Total: -72.63 4.58 -68.05 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341939362.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.203 kcal (2) G-P(sol) polarization free energy of solvation -72.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds