Wall clock time and date at job start Wed Apr 1 2020 04:49:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 H 1.09006 * 109.46611 * 174.68615 * 3 2 1 5 5 C 1.52998 * 109.47093 * 54.69170 * 3 2 1 6 6 N 1.46892 * 109.47327 * 294.68639 * 3 2 1 7 7 C 1.46903 * 111.00169 * 303.95954 * 6 3 2 8 8 C 1.38580 * 111.00281 * 180.02562 * 6 3 2 9 9 N 1.31217 * 126.46977 * 27.85551 * 8 6 3 10 10 N 1.28526 * 109.86022 * 179.97438 * 9 8 6 11 11 C 1.30302 * 110.05361 * 359.97438 * 10 9 8 12 12 C 1.50701 * 126.34745 * 179.97438 * 11 10 9 13 13 H 1.08996 * 109.46601 * 180.02562 * 12 11 10 14 14 C 1.53003 * 109.46674 * 60.02823 * 12 11 10 15 15 C 1.52998 * 109.47386 * 300.02606 * 12 11 10 16 16 C 1.50695 * 109.47111 * 185.00019 * 15 12 11 17 17 H 1.07996 * 120.00308 * 359.97438 * 16 15 12 18 18 C 1.37880 * 119.99848 * 180.02562 * 16 15 12 19 19 N 1.31511 * 119.99745 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99889 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47111 * 60.00032 * 20 18 16 22 22 H 1.48497 * 109.47067 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47095 * 299.99907 * 20 18 16 24 24 N 1.36448 * 126.47215 * 207.82364 * 8 6 3 25 25 C 1.46492 * 127.14184 * 0.02562 * 24 8 6 26 26 C 1.53006 * 109.47031 * 95.47545 * 25 24 8 27 27 H 1.08995 * 110.27237 * 55.63997 * 26 25 24 28 28 C 1.54946 * 110.30829 * 177.83630 * 26 25 24 29 29 C 1.55305 * 100.94358 * 155.35785 * 28 26 25 30 30 C 1.54387 * 102.25252 * 325.86900 * 29 28 26 31 31 O 1.43237 * 107.58859 * 21.35394 * 30 29 28 32 32 H 4.18737 * 15.03851 * 359.97438 * 4 2 1 33 33 H 1.09000 * 109.46845 * 180.02562 * 5 3 2 34 34 H 1.08997 * 109.47157 * 299.99389 * 5 3 2 35 35 H 1.08999 * 109.47300 * 59.99799 * 5 3 2 36 36 H 1.09004 * 109.46798 * 302.14694 * 7 6 3 37 37 H 1.08996 * 109.47418 * 62.14250 * 7 6 3 38 38 H 1.08998 * 109.47373 * 182.14677 * 7 6 3 39 39 H 1.09002 * 109.46400 * 179.97438 * 14 12 11 40 40 H 1.08996 * 109.47025 * 299.99671 * 14 12 11 41 41 H 1.08989 * 109.47474 * 60.00023 * 14 12 11 42 42 H 1.09001 * 109.46641 * 305.00401 * 15 12 11 43 43 H 1.09005 * 109.47058 * 64.99893 * 15 12 11 44 44 H 0.97009 * 119.99846 * 180.02562 * 19 18 16 45 45 H 1.08998 * 109.47650 * 215.47801 * 25 24 8 46 46 H 1.09004 * 109.47284 * 335.47858 * 25 24 8 47 47 H 1.08999 * 111.12964 * 273.27828 * 28 26 25 48 48 H 1.09007 * 111.12492 * 37.44135 * 28 26 25 49 49 H 1.08990 * 110.85428 * 207.67424 * 29 28 26 50 50 H 1.09005 * 111.01867 * 84.13131 * 29 28 26 51 51 H 1.08998 * 109.82980 * 261.84141 * 30 29 28 52 52 H 1.09001 * 109.90305 * 140.90844 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0088 1.0242 -0.0952 5 6 3.1564 -0.8328 -1.1771 6 7 3.1360 -0.5775 1.2583 7 6 2.5889 0.1418 2.4165 8 6 4.5213 -0.5918 1.2922 9 7 5.3253 0.2377 0.6699 10 7 6.5480 -0.0663 0.9237 11 6 6.5963 -1.0990 1.7169 12 6 7.8422 -1.7617 2.2456 13 1 7.5646 -2.6003 2.8840 14 6 8.6530 -0.7493 3.0572 15 6 8.6860 -2.2695 1.0746 16 6 9.8687 -3.0387 1.6041 17 1 10.0052 -3.1536 2.6692 18 6 10.7771 -3.5951 0.7287 19 7 10.6111 -3.4547 -0.5683 20 14 12.2435 -4.5481 1.3850 21 1 11.7649 -5.7026 2.1870 22 1 13.0630 -5.0399 0.2485 23 1 13.0688 -3.6587 2.2413 24 7 5.3068 -1.4708 1.9793 25 6 4.8613 -2.5820 2.8236 26 6 4.8566 -3.8745 2.0049 27 1 5.8402 -4.0489 1.5689 28 6 4.4401 -5.0730 2.8943 29 6 3.8850 -6.0541 1.8261 30 6 3.2521 -5.0934 0.7964 31 8 3.8587 -3.8080 0.9738 32 1 -1.0500 -0.0012 -0.0004 33 1 4.2464 -0.8327 -1.1768 34 1 2.7936 -1.8563 -1.0820 35 1 2.7929 -0.4038 -2.1109 36 1 2.8603 1.1955 2.3510 37 1 1.5032 0.0461 2.4240 38 1 2.9974 -0.2823 3.3337 39 1 9.5539 -1.2288 3.4400 40 1 8.9305 0.0894 2.4188 41 1 8.0520 -0.3876 3.8914 42 1 8.0798 -2.9220 0.4462 43 1 9.0376 -1.4222 0.4859 44 1 11.2500 -3.8464 -1.1843 45 1 5.5398 -2.6903 3.6697 46 1 3.8544 -2.3797 3.1890 47 1 5.3017 -5.4987 3.4087 48 1 3.6644 -4.7847 3.6038 49 1 3.1306 -6.7116 2.2579 50 1 4.6888 -6.6340 1.3725 51 1 2.1781 -5.0223 0.9684 52 1 3.4415 -5.4554 -0.2141 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001343244126.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:49:08 Heat of formation + Delta-G solvation = 93.363700 kcal Electronic energy + Delta-G solvation = -32390.499370 eV Core-core repulsion = 28393.419806 eV Total energy + Delta-G solvation = -3997.079564 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.60629 -39.42072 -38.28815 -35.35228 -34.73538 -33.20012 -32.19926 -32.14040 -30.59492 -30.16967 -28.82986 -26.95599 -26.14992 -25.28958 -24.05973 -23.85163 -22.18158 -21.71730 -21.48787 -20.33863 -19.14934 -17.91462 -17.21667 -16.71797 -16.57334 -16.31275 -15.94880 -15.58295 -14.96751 -14.85151 -14.64397 -14.48380 -14.02042 -13.59054 -13.44348 -13.25667 -13.03899 -12.85905 -12.46075 -12.36101 -12.27416 -11.95806 -11.82795 -11.69648 -11.67201 -11.51681 -11.33990 -11.19675 -11.02137 -10.93111 -10.91272 -10.80676 -10.71581 -10.49042 -10.36865 -10.21129 -9.91705 -9.82239 -9.64118 -9.37768 -9.11796 -8.95668 -8.36106 -8.02396 -5.99576 -4.03476 2.13848 2.28724 2.73373 2.85096 3.31393 3.35637 3.37452 3.38808 3.68871 3.89865 4.21672 4.33786 4.42975 4.52260 4.74813 4.80756 4.84184 5.00311 5.01996 5.13554 5.16819 5.25368 5.31884 5.32053 5.35515 5.37545 5.52946 5.58445 5.61568 5.61749 5.64979 5.72697 5.74463 5.85478 5.92092 6.01693 6.04739 6.10241 6.12444 6.24430 6.34785 6.41637 6.68251 6.72851 6.84782 6.94667 7.03194 7.07626 7.45402 7.53538 7.64214 7.80266 8.00145 8.35447 9.02055 9.27686 9.59875 11.11254 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011427 B = 0.003620 C = 0.003161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2449.659289 B = 7732.139877 C = 8855.759071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.166 4.166 3 C 0.209 3.791 4 H 0.083 0.917 5 C -0.138 4.138 6 N -0.446 5.446 7 C 0.030 3.970 8 C 0.344 3.656 9 N -0.322 5.322 10 N -0.283 5.283 11 C 0.213 3.787 12 C -0.001 4.001 13 H 0.069 0.931 14 C -0.126 4.126 15 C 0.041 3.959 16 C -0.521 4.521 17 H 0.057 0.943 18 C 0.060 3.940 19 N -0.889 5.889 20 Si 0.890 3.110 21 H -0.278 1.278 22 H -0.288 1.288 23 H -0.276 1.276 24 N -0.468 5.468 25 C 0.117 3.883 26 C 0.065 3.935 27 H 0.088 0.912 28 C -0.147 4.147 29 C -0.154 4.154 30 C 0.052 3.948 31 O -0.359 6.359 32 H 0.218 0.782 33 H 0.074 0.926 34 H 0.067 0.933 35 H 0.063 0.937 36 H 0.040 0.960 37 H 0.082 0.918 38 H 0.067 0.933 39 H 0.074 0.926 40 H 0.061 0.939 41 H 0.030 0.970 42 H 0.014 0.986 43 H 0.032 0.968 44 H 0.261 0.739 45 H 0.104 0.896 46 H 0.099 0.901 47 H 0.089 0.911 48 H 0.079 0.921 49 H 0.080 0.920 50 H 0.079 0.921 51 H 0.065 0.935 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.384 -0.644 7.947 21.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.167 4.167 3 C 0.102 3.898 4 H 0.100 0.900 5 C -0.196 4.196 6 N -0.171 5.171 7 C -0.118 4.118 8 C -0.012 4.012 9 N -0.166 5.166 10 N -0.121 5.121 11 C -0.054 4.054 12 C -0.022 4.022 13 H 0.088 0.912 14 C -0.184 4.184 15 C 0.003 3.997 16 C -0.560 4.560 17 H 0.075 0.925 18 C -0.142 4.142 19 N -0.527 5.527 20 Si 0.718 3.282 21 H -0.204 1.204 22 H -0.213 1.213 23 H -0.202 1.202 24 N -0.161 5.161 25 C -0.006 4.006 26 C 0.006 3.994 27 H 0.105 0.895 28 C -0.185 4.185 29 C -0.192 4.192 30 C -0.025 4.025 31 O -0.278 6.278 32 H 0.235 0.765 33 H 0.093 0.907 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.059 0.941 37 H 0.100 0.900 38 H 0.086 0.914 39 H 0.093 0.907 40 H 0.080 0.920 41 H 0.049 0.951 42 H 0.032 0.968 43 H 0.050 0.950 44 H 0.071 0.929 45 H 0.122 0.878 46 H 0.117 0.883 47 H 0.108 0.892 48 H 0.097 0.903 49 H 0.099 0.901 50 H 0.098 0.902 51 H 0.083 0.917 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -20.065 0.174 6.805 21.189 hybrid contribution 0.313 -1.284 1.112 1.727 sum -19.752 -1.110 7.918 21.309 Atomic orbital electron populations 1.24808 0.95662 1.01516 0.99763 1.22679 0.93672 0.99756 1.00598 1.18416 0.83928 0.98758 0.88682 0.89973 1.21777 1.02707 1.00030 0.95053 1.58567 1.00393 1.54291 1.03837 1.22478 1.00935 0.96619 0.91760 1.21953 0.89828 0.91175 0.98247 1.74541 0.96994 1.21964 1.23119 1.74013 1.11178 1.12988 1.13953 1.25572 0.85435 0.96076 0.98286 1.19976 0.87040 0.95557 0.99644 0.91231 1.21679 0.99669 0.98940 0.98128 1.19080 0.93149 0.96524 0.90977 1.21093 1.08338 1.33725 0.92805 0.92453 1.24991 0.97946 0.96405 0.94816 1.69975 1.36532 1.44808 1.01424 0.86696 0.82839 0.80287 0.78379 1.20352 1.21342 1.20163 1.46151 1.06593 1.24586 1.38738 1.21980 1.02158 0.84119 0.92389 1.23396 0.94137 0.93317 0.88533 0.89459 1.23226 1.01999 0.95150 0.98115 1.23094 1.01229 0.98394 0.96435 1.23077 0.97134 0.83433 0.98852 1.88574 1.53339 1.29619 1.56252 0.76528 0.90700 0.91409 0.91769 0.94141 0.89955 0.91388 0.90721 0.92011 0.95060 0.96799 0.94988 0.92876 0.87807 0.88287 0.89230 0.90252 0.90138 0.90191 0.91667 0.91658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.95 19.25 29.55 0.57 -1.38 16 2 C -0.17 -2.01 11.19 -37.12 -0.42 -2.42 16 3 C 0.21 2.89 2.23 -70.50 -0.16 2.74 16 4 H 0.08 1.19 7.88 -51.93 -0.41 0.78 16 5 C -0.14 -2.04 8.99 37.16 0.33 -1.70 16 6 N -0.45 -6.34 4.61 -177.98 -0.82 -7.16 16 7 C 0.03 0.34 9.14 60.07 0.55 0.89 16 8 C 0.34 5.90 5.80 -318.88 -1.85 4.05 16 9 N -0.32 -6.48 10.48 30.31 0.32 -6.16 16 10 N -0.28 -6.24 12.18 32.99 0.40 -5.84 16 11 C 0.21 4.24 6.58 -154.00 -1.01 3.23 16 12 C 0.00 -0.02 2.71 -91.77 -0.25 -0.27 16 13 H 0.07 1.27 7.08 -51.93 -0.37 0.90 16 14 C -0.13 -2.35 8.99 37.16 0.33 -2.01 16 15 C 0.04 1.03 4.43 -27.89 -0.12 0.91 16 16 C -0.52 -13.91 8.41 -34.44 -0.29 -14.20 16 17 H 0.06 1.44 7.05 -52.49 -0.37 1.07 16 18 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 19 N -0.89 -26.47 13.29 55.43 0.74 -25.73 16 20 Si 0.89 20.99 29.54 -169.99 -5.02 15.97 16 21 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 22 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 24 N -0.47 -7.83 2.79 -114.08 -0.32 -8.15 16 25 C 0.12 1.49 5.49 -4.04 -0.02 1.47 16 26 C 0.06 0.86 3.69 -25.70 -0.09 0.76 16 27 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 28 C -0.15 -1.40 6.57 -24.48 -0.16 -1.56 16 29 C -0.15 -1.43 7.02 -24.78 -0.17 -1.61 16 30 C 0.05 0.58 7.79 37.88 0.30 0.88 16 31 O -0.36 -5.25 11.02 -35.23 -0.39 -5.64 16 32 H 0.22 1.28 7.80 -54.09 -0.42 0.86 16 33 H 0.07 1.33 6.52 -51.93 -0.34 1.00 16 34 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.08 0.82 7.07 -51.93 -0.37 0.45 16 38 H 0.07 0.72 7.61 -51.93 -0.40 0.32 16 39 H 0.07 1.40 6.95 -51.93 -0.36 1.04 16 40 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 41 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 45 H 0.10 1.12 7.48 -51.93 -0.39 0.73 16 46 H 0.10 1.10 7.62 -51.93 -0.40 0.70 16 47 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 48 H 0.08 0.63 8.06 -51.93 -0.42 0.21 16 49 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 50 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 51 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 52 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 424.24 15.07 6.39 6.39 Total: -1.00 -33.29 424.24 -10.13 -43.41 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -8.86 Total: 1.56 kcal Atomic # 6 Polarization: -6.08 SS G_CDS: -2.56 Total: -8.65 kcal Atomic # 7 Polarization: -53.37 SS G_CDS: 0.32 Total: -53.05 kcal Atomic # 8 Polarization: -5.25 SS G_CDS: -0.39 Total: -5.64 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 6.39 Total: 6.39 kcal Total: -33.29 -10.13 -43.41 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343244126.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.777 kcal (2) G-P(sol) polarization free energy of solvation -33.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds