Wall clock time and date at job start Wed Apr 1 2020 04:49:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 H 1.09006 * 109.46611 * 174.68615 * 3 2 1 5 5 C 1.52998 * 109.47093 * 54.69170 * 3 2 1 6 6 N 1.46892 * 109.47327 * 294.68639 * 3 2 1 7 7 C 1.46903 * 111.00169 * 303.95954 * 6 3 2 8 8 C 1.38580 * 111.00281 * 180.02562 * 6 3 2 9 9 N 1.31217 * 126.46977 * 27.85551 * 8 6 3 10 10 N 1.28526 * 109.86022 * 179.97438 * 9 8 6 11 11 C 1.30302 * 110.05361 * 359.97438 * 10 9 8 12 12 C 1.50701 * 126.34745 * 179.97438 * 11 10 9 13 13 H 1.08996 * 109.46601 * 180.02562 * 12 11 10 14 14 C 1.53003 * 109.46674 * 60.02823 * 12 11 10 15 15 C 1.52998 * 109.47386 * 300.02606 * 12 11 10 16 16 C 1.50695 * 109.47111 * 185.00019 * 15 12 11 17 17 H 1.07996 * 120.00308 * 359.97438 * 16 15 12 18 18 C 1.37880 * 119.99848 * 180.02562 * 16 15 12 19 19 N 1.31511 * 119.99745 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99889 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47111 * 60.00032 * 20 18 16 22 22 H 1.48497 * 109.47067 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47095 * 299.99907 * 20 18 16 24 24 N 1.36448 * 126.47215 * 207.82364 * 8 6 3 25 25 C 1.46492 * 127.14184 * 0.02562 * 24 8 6 26 26 C 1.53006 * 109.47031 * 95.47545 * 25 24 8 27 27 H 1.08995 * 110.27237 * 55.63997 * 26 25 24 28 28 C 1.54946 * 110.30829 * 177.83630 * 26 25 24 29 29 C 1.55305 * 100.94358 * 155.35785 * 28 26 25 30 30 C 1.54387 * 102.25252 * 325.86900 * 29 28 26 31 31 O 1.43237 * 107.58859 * 21.35394 * 30 29 28 32 32 H 4.18737 * 15.03851 * 359.97438 * 4 2 1 33 33 H 1.09000 * 109.46845 * 180.02562 * 5 3 2 34 34 H 1.08997 * 109.47157 * 299.99389 * 5 3 2 35 35 H 1.08999 * 109.47300 * 59.99799 * 5 3 2 36 36 H 1.09004 * 109.46798 * 302.14694 * 7 6 3 37 37 H 1.08996 * 109.47418 * 62.14250 * 7 6 3 38 38 H 1.08998 * 109.47373 * 182.14677 * 7 6 3 39 39 H 1.09002 * 109.46400 * 179.97438 * 14 12 11 40 40 H 1.08996 * 109.47025 * 299.99671 * 14 12 11 41 41 H 1.08989 * 109.47474 * 60.00023 * 14 12 11 42 42 H 1.09001 * 109.46641 * 305.00401 * 15 12 11 43 43 H 1.09005 * 109.47058 * 64.99893 * 15 12 11 44 44 H 0.97009 * 119.99846 * 180.02562 * 19 18 16 45 45 H 1.08998 * 109.47650 * 215.47801 * 25 24 8 46 46 H 1.09004 * 109.47284 * 335.47858 * 25 24 8 47 47 H 1.08999 * 111.12964 * 273.27828 * 28 26 25 48 48 H 1.09007 * 111.12492 * 37.44135 * 28 26 25 49 49 H 1.08990 * 110.85428 * 207.67424 * 29 28 26 50 50 H 1.09005 * 111.01867 * 84.13131 * 29 28 26 51 51 H 1.08998 * 109.82980 * 261.84141 * 30 29 28 52 52 H 1.09001 * 109.90305 * 140.90844 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0088 1.0242 -0.0952 5 6 3.1564 -0.8328 -1.1771 6 7 3.1360 -0.5775 1.2583 7 6 2.5889 0.1418 2.4165 8 6 4.5213 -0.5918 1.2922 9 7 5.3253 0.2377 0.6699 10 7 6.5480 -0.0663 0.9237 11 6 6.5963 -1.0990 1.7169 12 6 7.8422 -1.7617 2.2456 13 1 7.5646 -2.6003 2.8840 14 6 8.6530 -0.7493 3.0572 15 6 8.6860 -2.2695 1.0746 16 6 9.8687 -3.0387 1.6041 17 1 10.0052 -3.1536 2.6692 18 6 10.7771 -3.5951 0.7287 19 7 10.6111 -3.4547 -0.5683 20 14 12.2435 -4.5481 1.3850 21 1 11.7649 -5.7026 2.1870 22 1 13.0630 -5.0399 0.2485 23 1 13.0688 -3.6587 2.2413 24 7 5.3068 -1.4708 1.9793 25 6 4.8613 -2.5820 2.8236 26 6 4.8566 -3.8745 2.0049 27 1 5.8402 -4.0489 1.5689 28 6 4.4401 -5.0730 2.8943 29 6 3.8850 -6.0541 1.8261 30 6 3.2521 -5.0934 0.7964 31 8 3.8587 -3.8080 0.9738 32 1 -1.0500 -0.0012 -0.0004 33 1 4.2464 -0.8327 -1.1768 34 1 2.7936 -1.8563 -1.0820 35 1 2.7929 -0.4038 -2.1109 36 1 2.8603 1.1955 2.3510 37 1 1.5032 0.0461 2.4240 38 1 2.9974 -0.2823 3.3337 39 1 9.5539 -1.2288 3.4400 40 1 8.9305 0.0894 2.4188 41 1 8.0520 -0.3876 3.8914 42 1 8.0798 -2.9220 0.4462 43 1 9.0376 -1.4222 0.4859 44 1 11.2500 -3.8464 -1.1843 45 1 5.5398 -2.6903 3.6697 46 1 3.8544 -2.3797 3.1890 47 1 5.3017 -5.4987 3.4087 48 1 3.6644 -4.7847 3.6038 49 1 3.1306 -6.7116 2.2579 50 1 4.6888 -6.6340 1.3725 51 1 2.1781 -5.0223 0.9684 52 1 3.4415 -5.4554 -0.2141 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001343244126.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:49:06 Heat of formation + Delta-G solvation = 74.428022 kcal Electronic energy + Delta-G solvation = -32391.320483 eV Core-core repulsion = 28393.419806 eV Total energy + Delta-G solvation = -3997.900677 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -44.03423 -40.39162 -39.43627 -37.04307 -36.08550 -34.44560 -33.92494 -33.09008 -31.63458 -31.25210 -30.33909 -28.85448 -27.22149 -26.37040 -25.81678 -25.03914 -23.78776 -22.76773 -22.46156 -21.59573 -20.66396 -18.87309 -18.62260 -18.29481 -17.70034 -17.59009 -17.15605 -16.69959 -16.52936 -16.06646 -16.00992 -15.66127 -15.45208 -14.99643 -14.60231 -14.48870 -14.27959 -13.98886 -13.81185 -13.67943 -13.46101 -13.35526 -13.04784 -12.87864 -12.80435 -12.73876 -12.72558 -12.63742 -12.51006 -12.34230 -12.26476 -12.19378 -11.98350 -11.74437 -11.68703 -11.52292 -11.40309 -11.20600 -11.16412 -11.07244 -10.52939 -10.46312 -10.32408 -9.42588 -8.14629 -6.26830 0.75732 1.12997 1.43857 1.47555 1.54753 1.83911 1.85531 1.89476 2.44489 2.71240 2.87007 3.19249 3.33346 3.43471 3.50325 3.56092 3.77562 3.84218 3.95014 3.96348 4.08033 4.12821 4.19981 4.26492 4.30704 4.39543 4.43662 4.49296 4.53154 4.56173 4.60696 4.72913 4.74960 4.80131 4.83213 4.85601 4.92620 4.99340 5.04876 5.08296 5.11213 5.12894 5.18917 5.24683 5.38811 5.47354 5.55106 5.61280 5.71331 5.84801 6.06876 6.20256 6.24524 6.65816 6.89070 7.42458 7.79329 8.97678 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011427 B = 0.003620 C = 0.003161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2449.659289 B = 7732.139877 C = 8855.759071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.219 4.219 3 C 0.213 3.787 4 H 0.068 0.932 5 C -0.129 4.129 6 N -0.443 5.443 7 C 0.030 3.970 8 C 0.363 3.637 9 N -0.357 5.357 10 N -0.327 5.327 11 C 0.202 3.798 12 C 0.010 3.990 13 H 0.095 0.905 14 C -0.118 4.118 15 C 0.055 3.945 16 C -0.527 4.527 17 H 0.079 0.921 18 C -0.002 4.002 19 N -0.938 5.938 20 Si 0.966 3.034 21 H -0.260 1.260 22 H -0.292 1.292 23 H -0.264 1.264 24 N -0.463 5.463 25 C 0.110 3.890 26 C 0.061 3.939 27 H 0.042 0.958 28 C -0.134 4.134 29 C -0.149 4.149 30 C 0.044 3.956 31 O -0.388 6.388 32 H 0.258 0.742 33 H 0.034 0.966 34 H 0.061 0.939 35 H 0.079 0.921 36 H 0.034 0.966 37 H 0.104 0.896 38 H 0.081 0.919 39 H 0.075 0.925 40 H 0.038 0.962 41 H 0.065 0.935 42 H -0.027 1.027 43 H -0.014 1.014 44 H 0.261 0.739 45 H 0.129 0.871 46 H 0.124 0.876 47 H 0.099 0.901 48 H 0.107 0.893 49 H 0.110 0.890 50 H 0.067 0.933 51 H 0.084 0.916 52 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.056 -1.988 11.459 25.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.220 4.220 3 C 0.106 3.894 4 H 0.085 0.915 5 C -0.187 4.187 6 N -0.168 5.168 7 C -0.117 4.117 8 C 0.005 3.995 9 N -0.201 5.201 10 N -0.165 5.165 11 C -0.067 4.067 12 C -0.010 4.010 13 H 0.113 0.887 14 C -0.176 4.176 15 C 0.017 3.983 16 C -0.565 4.565 17 H 0.097 0.903 18 C -0.200 4.200 19 N -0.578 5.578 20 Si 0.790 3.210 21 H -0.185 1.185 22 H -0.218 1.218 23 H -0.189 1.189 24 N -0.155 5.155 25 C -0.011 4.011 26 C 0.002 3.998 27 H 0.060 0.940 28 C -0.172 4.172 29 C -0.186 4.186 30 C -0.033 4.033 31 O -0.308 6.308 32 H 0.274 0.726 33 H 0.053 0.947 34 H 0.080 0.920 35 H 0.098 0.902 36 H 0.053 0.947 37 H 0.123 0.877 38 H 0.100 0.900 39 H 0.094 0.906 40 H 0.057 0.943 41 H 0.084 0.916 42 H -0.009 1.009 43 H 0.005 0.995 44 H 0.069 0.931 45 H 0.147 0.853 46 H 0.142 0.858 47 H 0.117 0.883 48 H 0.126 0.874 49 H 0.129 0.871 50 H 0.086 0.914 51 H 0.102 0.898 52 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -22.758 -1.178 10.353 25.030 hybrid contribution 0.948 -0.858 -0.091 1.282 sum -21.811 -2.035 10.262 24.190 Atomic orbital electron populations 1.25695 0.96219 0.98306 0.96544 1.22380 0.93367 1.02671 1.03562 1.18190 0.85810 0.97447 0.87922 0.91453 1.21658 0.99962 1.00173 0.96879 1.58809 0.98182 1.54718 1.05105 1.22591 1.02169 0.96025 0.90880 1.22277 0.90943 0.90036 0.96196 1.74436 0.96810 1.23913 1.24943 1.73902 1.12653 1.14732 1.15213 1.25332 0.86598 0.96098 0.98673 1.19742 0.86739 0.96789 0.97774 0.88715 1.21594 0.99955 0.97638 0.98406 1.18787 0.93425 0.94012 0.92040 1.21536 1.08213 1.32897 0.93812 0.90315 1.26025 1.01437 0.97622 0.94878 1.70166 1.37955 1.46453 1.03222 0.85493 0.78640 0.79179 0.77699 1.18455 1.21819 1.18857 1.46277 1.05349 1.25102 1.38782 1.22418 1.04081 0.82387 0.92245 1.23346 0.92041 0.95364 0.89009 0.94005 1.23228 1.03130 0.93020 0.97804 1.23096 1.01520 0.98194 0.95798 1.23254 0.98139 0.82842 0.99029 1.88548 1.53556 1.31551 1.57150 0.72554 0.94691 0.92024 0.90238 0.94719 0.87722 0.90041 0.90619 0.94264 0.91647 1.00859 0.99533 0.93070 0.85315 0.85761 0.88289 0.87412 0.87110 0.91397 0.89772 0.92929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.36 19.25 74.32 1.43 -0.93 16 2 C -0.22 -4.90 11.19 31.13 0.35 -4.55 16 3 C 0.21 5.99 2.23 43.11 0.10 6.08 16 4 H 0.07 2.06 7.88 -2.38 -0.02 2.04 16 5 C -0.13 -4.04 8.99 71.98 0.65 -3.39 16 6 N -0.44 -12.42 4.61 -717.02 -3.31 -15.73 16 7 C 0.03 0.63 9.14 127.69 1.17 1.80 16 8 C 0.36 12.78 5.80 260.11 1.51 14.29 16 9 N -0.36 -15.31 10.48 -58.01 -0.61 -15.91 16 10 N -0.33 -15.43 12.18 -49.53 -0.60 -16.03 16 11 C 0.20 8.38 6.58 137.64 0.91 9.28 16 12 C 0.01 0.43 2.71 -11.54 -0.03 0.40 16 13 H 0.09 3.39 7.08 -2.39 -0.02 3.37 16 14 C -0.12 -4.38 8.99 71.98 0.65 -3.73 16 15 C 0.06 3.01 4.43 29.85 0.13 3.14 16 16 C -0.53 -28.73 8.41 25.60 0.22 -28.51 16 17 H 0.08 3.88 7.05 -2.91 -0.02 3.86 16 18 C 0.00 -0.12 5.46 84.66 0.46 0.34 16 19 N -0.94 -58.58 13.29 21.45 0.28 -58.30 16 20 Si 0.97 43.34 29.54 68.60 2.03 45.36 16 21 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 22 H -0.29 -13.23 7.11 99.48 0.71 -12.53 16 23 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 24 N -0.46 -15.69 2.79 -514.85 -1.44 -17.13 16 25 C 0.11 2.63 5.49 86.38 0.47 3.11 16 26 C 0.06 1.60 3.69 31.26 0.12 1.71 16 27 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 28 C -0.13 -2.20 6.57 32.05 0.21 -1.99 16 29 C -0.15 -2.48 7.02 31.86 0.22 -2.25 16 30 C 0.04 0.95 7.79 72.45 0.56 1.51 16 31 O -0.39 -11.46 11.02 -148.98 -1.64 -13.10 16 32 H 0.26 1.58 7.80 -4.42 -0.03 1.55 16 33 H 0.03 1.35 6.52 -2.39 -0.02 1.34 16 34 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 36 H 0.03 0.78 8.14 -2.38 -0.02 0.76 16 37 H 0.10 1.75 7.07 -2.39 -0.02 1.73 16 38 H 0.08 1.49 7.61 -2.39 -0.02 1.47 16 39 H 0.07 2.76 6.95 -2.39 -0.02 2.75 16 40 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 42 H -0.03 -1.65 8.14 -2.39 -0.02 -1.67 16 43 H -0.01 -0.86 8.14 -2.38 -0.02 -0.88 16 44 H 0.26 15.43 8.31 -92.70 -0.77 14.66 16 45 H 0.13 2.41 7.48 -2.39 -0.02 2.39 16 46 H 0.12 2.35 7.62 -2.38 -0.02 2.33 16 47 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 48 H 0.11 1.20 8.06 -2.38 -0.02 1.19 16 49 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 50 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 51 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 52 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 Total: -1.00 -79.98 424.24 4.72 -75.27 By element: Atomic # 1 Polarization: 18.38 SS G_CDS: 0.88 Total: 19.26 kcal Atomic # 6 Polarization: -12.80 SS G_CDS: 9.12 Total: -3.68 kcal Atomic # 7 Polarization: -117.43 SS G_CDS: -5.67 Total: -123.10 kcal Atomic # 8 Polarization: -11.46 SS G_CDS: -1.64 Total: -13.10 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.36 kcal Total: -79.98 4.72 -75.27 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343244126.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.694 kcal (2) G-P(sol) polarization free energy of solvation -79.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds