Wall clock time and date at job start Wed Apr 1 2020 04:49:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17391 * 1 3 3 C 1.47210 * 179.97438 * 2 1 4 4 H 1.08999 * 109.46783 * 148.56798 * 3 2 1 5 5 C 1.53000 * 109.46892 * 28.56878 * 3 2 1 6 6 N 1.46897 * 109.46928 * 268.56917 * 3 2 1 7 7 C 1.46901 * 110.99975 * 303.95613 * 6 3 2 8 8 C 1.38582 * 110.99868 * 180.02562 * 6 3 2 9 9 N 1.31215 * 126.46963 * 21.91860 * 8 6 3 10 10 N 1.28528 * 109.85703 * 180.02562 * 9 8 6 11 11 C 1.30292 * 110.05620 * 359.71623 * 10 9 8 12 12 C 1.50702 * 126.35233 * 180.31042 * 11 10 9 13 13 H 1.08997 * 109.47095 * 180.15375 * 12 11 10 14 14 C 1.52999 * 109.47409 * 300.15972 * 12 11 10 15 15 C 1.53001 * 109.46916 * 60.15974 * 12 11 10 16 16 C 1.50699 * 109.47267 * 174.99919 * 15 12 11 17 17 H 1.08003 * 119.99986 * 0.02562 * 16 15 12 18 18 C 1.37874 * 120.00133 * 179.97438 * 16 15 12 19 19 N 1.31516 * 119.99868 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00290 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.46854 * 90.00106 * 20 18 16 22 22 H 1.48500 * 109.47071 * 210.00396 * 20 18 16 23 23 H 1.48497 * 109.46834 * 330.00496 * 20 18 16 24 24 N 1.36453 * 126.47487 * 201.96722 * 8 6 3 25 25 C 1.46504 * 127.13558 * 359.95984 * 24 8 6 26 26 C 1.52992 * 109.47022 * 93.55314 * 25 24 8 27 27 H 1.09002 * 110.35378 * 55.69413 * 26 25 24 28 28 C 1.54947 * 110.30986 * 177.83549 * 26 25 24 29 29 C 1.55308 * 100.94419 * 155.36163 * 28 26 25 30 30 C 1.54381 * 102.24902 * 325.86482 * 29 28 26 31 31 O 1.43230 * 107.59018 * 21.36098 * 30 29 28 32 32 H 4.18742 * 15.03842 * 0.02562 * 4 2 1 33 33 H 1.08999 * 109.47126 * 60.00072 * 5 3 2 34 34 H 1.09003 * 109.46398 * 179.97438 * 5 3 2 35 35 H 1.08999 * 109.47341 * 299.99578 * 5 3 2 36 36 H 1.09005 * 109.47095 * 301.25043 * 7 6 3 37 37 H 1.08990 * 109.47152 * 61.25858 * 7 6 3 38 38 H 1.09000 * 109.46820 * 181.25920 * 7 6 3 39 39 H 1.09003 * 109.47249 * 59.99263 * 14 12 11 40 40 H 1.08993 * 109.47424 * 179.97438 * 14 12 11 41 41 H 1.09000 * 109.46875 * 299.99991 * 14 12 11 42 42 H 1.09008 * 109.47076 * 294.99974 * 15 12 11 43 43 H 1.09000 * 109.47389 * 54.99737 * 15 12 11 44 44 H 0.97003 * 119.99894 * 179.97438 * 19 18 16 45 45 H 1.09006 * 109.46838 * 333.55514 * 25 24 8 46 46 H 1.09001 * 109.47104 * 213.55535 * 25 24 8 47 47 H 1.08997 * 111.12522 * 37.44082 * 28 26 25 48 48 H 1.09007 * 111.15759 * 273.29401 * 28 26 25 49 49 H 1.09001 * 110.84614 * 207.67378 * 29 28 26 50 50 H 1.09002 * 111.01822 * 84.13510 * 29 28 26 51 51 H 1.08994 * 109.83084 * 261.84071 * 30 29 28 52 52 H 1.09005 * 109.90147 * 140.91327 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0089 0.8777 -0.5359 5 6 3.1565 -1.2660 -0.6898 6 7 3.1356 0.0355 1.3845 7 6 2.5883 1.1912 2.1076 8 6 4.5209 0.0376 1.4215 9 7 5.3264 0.4083 0.4543 10 7 6.5486 0.2810 0.8310 11 6 6.5950 -0.1690 2.0529 12 6 7.8396 -0.4463 2.8560 13 1 7.5605 -0.8172 3.8422 14 6 8.6872 -1.4975 2.1367 15 6 8.6475 0.8443 3.0066 16 6 9.8269 0.5961 3.9111 17 1 9.9849 -0.3843 4.3358 18 6 10.7051 1.6203 4.1957 19 7 10.5131 2.8139 3.6781 20 14 12.1675 1.3124 5.3164 21 1 13.3304 0.8744 4.5034 22 1 12.5109 2.5645 6.0373 23 1 11.8237 0.2537 6.2992 24 7 5.3050 -0.3463 2.4702 25 6 4.8574 -0.8394 3.7751 26 6 4.8014 -2.3681 3.7507 27 1 5.7685 -2.7783 3.4596 28 6 4.3821 -2.9132 5.1392 29 6 3.7763 -4.2880 4.7456 30 6 3.1377 -3.9838 3.3734 31 8 3.7778 -2.8154 2.8476 32 1 -1.0501 -0.0005 0.0009 33 1 2.7932 -1.2918 -1.7172 34 1 4.2466 -1.2652 -0.6902 35 1 2.7936 -2.1430 -0.1539 36 1 2.8733 2.1094 1.5938 37 1 1.5015 1.1165 2.1425 38 1 2.9844 1.2053 3.1230 39 1 8.9663 -1.1265 1.1505 40 1 9.5876 -1.6977 2.7174 41 1 8.1117 -2.4169 2.0295 42 1 9.0019 1.1674 2.0276 43 1 8.0155 1.6204 3.4383 44 1 11.1307 3.5346 3.8786 45 1 3.8656 -0.4429 3.9927 46 1 5.5560 -0.5136 4.5458 47 1 3.6326 -2.2719 5.6030 48 1 5.2471 -3.0371 5.7909 49 1 3.0192 -4.5987 5.4656 50 1 4.5544 -5.0457 4.6521 51 1 2.0707 -3.7978 3.4953 52 1 3.2915 -4.8253 2.6978 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001343244130.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:49:14 Heat of formation + Delta-G solvation = 94.294014 kcal Electronic energy + Delta-G solvation = -32184.920957 eV Core-core repulsion = 28187.881734 eV Total energy + Delta-G solvation = -3997.039223 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.61271 -39.56562 -38.30196 -35.36246 -34.77485 -33.20462 -32.33429 -32.14805 -30.64701 -30.23757 -28.83743 -26.97485 -26.20711 -25.28483 -24.06529 -23.86259 -22.27365 -21.83588 -21.55278 -20.35792 -19.16666 -17.91573 -17.28049 -16.78755 -16.54161 -16.42333 -16.02823 -15.56704 -15.00772 -14.98777 -14.71602 -14.48497 -13.97945 -13.64099 -13.52872 -13.28089 -13.10748 -12.91634 -12.53750 -12.37322 -12.29362 -12.04610 -11.85697 -11.78786 -11.69180 -11.55940 -11.45608 -11.19503 -11.13067 -10.99182 -10.91527 -10.83591 -10.69489 -10.48312 -10.37612 -10.19490 -9.95854 -9.91574 -9.60668 -9.45906 -9.12241 -9.04680 -8.36984 -7.95905 -6.00774 -4.04475 2.17549 2.24631 2.71797 2.83522 3.30622 3.35433 3.37668 3.39150 3.58085 3.87394 4.19389 4.20915 4.41292 4.44215 4.61959 4.72064 4.83170 4.89795 4.98201 5.04089 5.12416 5.20523 5.26687 5.30957 5.33900 5.34884 5.43932 5.49519 5.53513 5.58624 5.60897 5.63580 5.68285 5.73764 5.84702 5.90511 6.05192 6.06757 6.10873 6.22545 6.31360 6.36379 6.68446 6.72777 6.85151 6.88784 6.95464 7.08043 7.43970 7.52673 7.62317 7.79251 7.98954 8.34650 9.01276 9.28451 9.59098 11.10219 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011427 B = 0.003412 C = 0.002888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2449.817385 B = 8203.502051 C = 9692.050181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.167 4.167 3 C 0.208 3.792 4 H 0.083 0.917 5 C -0.138 4.138 6 N -0.444 5.444 7 C 0.027 3.973 8 C 0.346 3.654 9 N -0.324 5.324 10 N -0.283 5.283 11 C 0.213 3.787 12 C 0.000 4.000 13 H 0.069 0.931 14 C -0.125 4.125 15 C 0.039 3.961 16 C -0.520 4.520 17 H 0.058 0.942 18 C 0.059 3.941 19 N -0.890 5.890 20 Si 0.891 3.109 21 H -0.280 1.280 22 H -0.287 1.287 23 H -0.274 1.274 24 N -0.469 5.469 25 C 0.114 3.886 26 C 0.068 3.932 27 H 0.079 0.921 28 C -0.148 4.148 29 C -0.154 4.154 30 C 0.051 3.949 31 O -0.357 6.357 32 H 0.218 0.782 33 H 0.063 0.937 34 H 0.077 0.923 35 H 0.064 0.936 36 H 0.041 0.959 37 H 0.083 0.917 38 H 0.069 0.931 39 H 0.061 0.939 40 H 0.074 0.926 41 H 0.031 0.969 42 H 0.032 0.968 43 H 0.013 0.987 44 H 0.261 0.739 45 H 0.099 0.901 46 H 0.109 0.891 47 H 0.082 0.918 48 H 0.089 0.911 49 H 0.081 0.919 50 H 0.077 0.923 51 H 0.067 0.933 52 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.320 -12.010 1.207 23.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.168 4.168 3 C 0.102 3.898 4 H 0.101 0.899 5 C -0.196 4.196 6 N -0.168 5.168 7 C -0.121 4.121 8 C -0.010 4.010 9 N -0.168 5.168 10 N -0.121 5.121 11 C -0.054 4.054 12 C -0.022 4.022 13 H 0.088 0.912 14 C -0.183 4.183 15 C 0.001 3.999 16 C -0.558 4.558 17 H 0.076 0.924 18 C -0.142 4.142 19 N -0.529 5.529 20 Si 0.719 3.281 21 H -0.206 1.206 22 H -0.213 1.213 23 H -0.199 1.199 24 N -0.163 5.163 25 C -0.010 4.010 26 C 0.009 3.991 27 H 0.097 0.903 28 C -0.186 4.186 29 C -0.191 4.191 30 C -0.026 4.026 31 O -0.276 6.276 32 H 0.235 0.765 33 H 0.082 0.918 34 H 0.096 0.904 35 H 0.083 0.917 36 H 0.060 0.940 37 H 0.101 0.899 38 H 0.088 0.912 39 H 0.080 0.920 40 H 0.093 0.907 41 H 0.050 0.950 42 H 0.051 0.949 43 H 0.031 0.969 44 H 0.071 0.929 45 H 0.117 0.883 46 H 0.127 0.873 47 H 0.100 0.900 48 H 0.108 0.892 49 H 0.100 0.900 50 H 0.096 0.904 51 H 0.085 0.915 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -20.008 -11.638 -0.117 23.147 hybrid contribution 0.288 0.018 1.861 1.883 sum -19.721 -11.620 1.745 22.956 Atomic orbital electron populations 1.24814 0.95673 1.01697 0.99491 1.22671 0.93679 0.99733 1.00701 1.18396 0.83923 1.00832 0.86665 0.89944 1.21789 1.02869 0.95628 0.99275 1.58589 1.00363 1.41793 1.16057 1.22511 1.00967 0.90211 0.98375 1.22011 0.89835 1.02020 0.87122 1.74549 0.96880 1.21087 1.24267 1.74000 1.11237 1.17603 1.09239 1.25548 0.85395 1.00692 0.93777 1.19960 0.86958 1.00904 0.94331 0.91237 1.21668 0.99462 0.95750 1.01435 1.19103 0.93566 0.89012 0.98260 1.21136 1.09354 0.96395 1.28965 0.92371 1.24999 0.97911 0.95158 0.96172 1.69983 1.37229 1.01496 1.44158 0.86621 0.83153 0.77558 0.80813 1.20588 1.21315 1.19914 1.46113 1.06584 1.50032 1.13537 1.22033 1.02525 0.93430 0.83026 1.23335 0.93076 0.93266 0.89376 0.90305 1.23249 1.02050 0.96513 0.96813 1.23097 1.00982 0.97698 0.97357 1.23085 0.97056 0.88539 0.93899 1.88606 1.50571 1.44007 1.44455 0.76519 0.91817 0.90437 0.91705 0.94018 0.89869 0.91201 0.92009 0.90745 0.95019 0.94945 0.96878 0.92932 0.88272 0.87255 0.89962 0.89212 0.90015 0.90446 0.91516 0.91768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.91 19.25 29.55 0.57 -1.34 16 2 C -0.17 -1.98 11.17 -37.12 -0.41 -2.40 16 3 C 0.21 2.82 2.20 -70.50 -0.16 2.67 16 4 H 0.08 1.19 7.90 -51.93 -0.41 0.78 16 5 C -0.14 -1.87 8.98 37.16 0.33 -1.54 16 6 N -0.44 -6.30 4.65 -177.98 -0.83 -7.13 16 7 C 0.03 0.33 9.06 60.07 0.54 0.87 16 8 C 0.35 5.94 6.00 -318.87 -1.91 4.03 16 9 N -0.32 -6.50 10.10 30.31 0.31 -6.20 16 10 N -0.28 -6.24 12.18 32.99 0.40 -5.84 16 11 C 0.21 4.24 6.58 -154.02 -1.01 3.22 16 12 C 0.00 -0.01 2.71 -91.77 -0.25 -0.26 16 13 H 0.07 1.27 7.02 -51.93 -0.36 0.90 16 14 C -0.13 -2.35 8.99 37.16 0.33 -2.02 16 15 C 0.04 0.98 4.43 -27.88 -0.12 0.86 16 16 C -0.52 -13.90 8.41 -34.44 -0.29 -14.19 16 17 H 0.06 1.47 7.06 -52.48 -0.37 1.10 16 18 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 19 N -0.89 -26.48 13.29 55.43 0.74 -25.75 16 20 Si 0.89 20.99 29.54 -169.99 -5.02 15.97 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 24 N -0.47 -7.85 2.79 -114.08 -0.32 -8.17 16 25 C 0.11 1.44 5.53 -4.04 -0.02 1.42 16 26 C 0.07 0.78 3.69 -25.71 -0.09 0.68 16 27 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 28 C -0.15 -1.20 6.57 -24.48 -0.16 -1.36 16 29 C -0.15 -1.12 7.02 -24.78 -0.17 -1.30 16 30 C 0.05 0.47 7.79 37.88 0.30 0.77 16 31 O -0.36 -4.56 11.02 -35.23 -0.39 -4.95 16 32 H 0.22 1.25 7.80 -54.09 -0.42 0.83 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.08 1.25 6.29 -51.93 -0.33 0.92 16 35 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.08 0.87 7.04 -51.93 -0.37 0.50 16 38 H 0.07 0.81 6.87 -51.93 -0.36 0.45 16 39 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 40 H 0.07 1.40 6.95 -51.93 -0.36 1.04 16 41 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 42 H 0.03 0.92 8.14 -51.92 -0.42 0.50 16 43 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 44 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 45 H 0.10 1.12 6.80 -51.93 -0.35 0.77 16 46 H 0.11 1.29 7.37 -51.93 -0.38 0.91 16 47 H 0.08 0.59 8.06 -51.93 -0.42 0.18 16 48 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 49 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 50 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 51 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 52 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 422.02 15.07 6.36 6.36 Total: -1.00 -33.35 422.02 -10.14 -43.49 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -8.76 Total: 0.53 kcal Atomic # 6 Polarization: -5.70 SS G_CDS: -2.63 Total: -8.33 kcal Atomic # 7 Polarization: -53.38 SS G_CDS: 0.30 Total: -53.08 kcal Atomic # 8 Polarization: -4.56 SS G_CDS: -0.39 Total: -4.95 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 6.36 Total: 6.36 kcal Total: -33.35 -10.14 -43.49 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343244130.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.784 kcal (2) G-P(sol) polarization free energy of solvation -33.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.490 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds