Wall clock time and date at job start Wed Apr 1 2020 04:49:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17391 * 1 3 3 C 1.47210 * 179.97438 * 2 1 4 4 H 1.08999 * 109.46783 * 148.56798 * 3 2 1 5 5 C 1.53000 * 109.46892 * 28.56878 * 3 2 1 6 6 N 1.46897 * 109.46928 * 268.56917 * 3 2 1 7 7 C 1.46901 * 110.99975 * 303.95613 * 6 3 2 8 8 C 1.38582 * 110.99868 * 180.02562 * 6 3 2 9 9 N 1.31215 * 126.46963 * 21.91860 * 8 6 3 10 10 N 1.28528 * 109.85703 * 180.02562 * 9 8 6 11 11 C 1.30292 * 110.05620 * 359.71623 * 10 9 8 12 12 C 1.50702 * 126.35233 * 180.31042 * 11 10 9 13 13 H 1.08997 * 109.47095 * 180.15375 * 12 11 10 14 14 C 1.52999 * 109.47409 * 300.15972 * 12 11 10 15 15 C 1.53001 * 109.46916 * 60.15974 * 12 11 10 16 16 C 1.50699 * 109.47267 * 174.99919 * 15 12 11 17 17 H 1.08003 * 119.99986 * 0.02562 * 16 15 12 18 18 C 1.37874 * 120.00133 * 179.97438 * 16 15 12 19 19 N 1.31516 * 119.99868 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00290 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.46854 * 90.00106 * 20 18 16 22 22 H 1.48500 * 109.47071 * 210.00396 * 20 18 16 23 23 H 1.48497 * 109.46834 * 330.00496 * 20 18 16 24 24 N 1.36453 * 126.47487 * 201.96722 * 8 6 3 25 25 C 1.46504 * 127.13558 * 359.95984 * 24 8 6 26 26 C 1.52992 * 109.47022 * 93.55314 * 25 24 8 27 27 H 1.09002 * 110.35378 * 55.69413 * 26 25 24 28 28 C 1.54947 * 110.30986 * 177.83549 * 26 25 24 29 29 C 1.55308 * 100.94419 * 155.36163 * 28 26 25 30 30 C 1.54381 * 102.24902 * 325.86482 * 29 28 26 31 31 O 1.43230 * 107.59018 * 21.36098 * 30 29 28 32 32 H 4.18742 * 15.03842 * 0.02562 * 4 2 1 33 33 H 1.08999 * 109.47126 * 60.00072 * 5 3 2 34 34 H 1.09003 * 109.46398 * 179.97438 * 5 3 2 35 35 H 1.08999 * 109.47341 * 299.99578 * 5 3 2 36 36 H 1.09005 * 109.47095 * 301.25043 * 7 6 3 37 37 H 1.08990 * 109.47152 * 61.25858 * 7 6 3 38 38 H 1.09000 * 109.46820 * 181.25920 * 7 6 3 39 39 H 1.09003 * 109.47249 * 59.99263 * 14 12 11 40 40 H 1.08993 * 109.47424 * 179.97438 * 14 12 11 41 41 H 1.09000 * 109.46875 * 299.99991 * 14 12 11 42 42 H 1.09008 * 109.47076 * 294.99974 * 15 12 11 43 43 H 1.09000 * 109.47389 * 54.99737 * 15 12 11 44 44 H 0.97003 * 119.99894 * 179.97438 * 19 18 16 45 45 H 1.09006 * 109.46838 * 333.55514 * 25 24 8 46 46 H 1.09001 * 109.47104 * 213.55535 * 25 24 8 47 47 H 1.08997 * 111.12522 * 37.44082 * 28 26 25 48 48 H 1.09007 * 111.15759 * 273.29401 * 28 26 25 49 49 H 1.09001 * 110.84614 * 207.67378 * 29 28 26 50 50 H 1.09002 * 111.01822 * 84.13510 * 29 28 26 51 51 H 1.08994 * 109.83084 * 261.84071 * 30 29 28 52 52 H 1.09005 * 109.90147 * 140.91327 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0089 0.8777 -0.5359 5 6 3.1565 -1.2660 -0.6898 6 7 3.1356 0.0355 1.3845 7 6 2.5883 1.1912 2.1076 8 6 4.5209 0.0376 1.4215 9 7 5.3264 0.4083 0.4543 10 7 6.5486 0.2810 0.8310 11 6 6.5950 -0.1690 2.0529 12 6 7.8396 -0.4463 2.8560 13 1 7.5605 -0.8172 3.8422 14 6 8.6872 -1.4975 2.1367 15 6 8.6475 0.8443 3.0066 16 6 9.8269 0.5961 3.9111 17 1 9.9849 -0.3843 4.3358 18 6 10.7051 1.6203 4.1957 19 7 10.5131 2.8139 3.6781 20 14 12.1675 1.3124 5.3164 21 1 13.3304 0.8744 4.5034 22 1 12.5109 2.5645 6.0373 23 1 11.8237 0.2537 6.2992 24 7 5.3050 -0.3463 2.4702 25 6 4.8574 -0.8394 3.7751 26 6 4.8014 -2.3681 3.7507 27 1 5.7685 -2.7783 3.4596 28 6 4.3821 -2.9132 5.1392 29 6 3.7763 -4.2880 4.7456 30 6 3.1377 -3.9838 3.3734 31 8 3.7778 -2.8154 2.8476 32 1 -1.0501 -0.0005 0.0009 33 1 2.7932 -1.2918 -1.7172 34 1 4.2466 -1.2652 -0.6902 35 1 2.7936 -2.1430 -0.1539 36 1 2.8733 2.1094 1.5938 37 1 1.5015 1.1165 2.1425 38 1 2.9844 1.2053 3.1230 39 1 8.9663 -1.1265 1.1505 40 1 9.5876 -1.6977 2.7174 41 1 8.1117 -2.4169 2.0295 42 1 9.0019 1.1674 2.0276 43 1 8.0155 1.6204 3.4383 44 1 11.1307 3.5346 3.8786 45 1 3.8656 -0.4429 3.9927 46 1 5.5560 -0.5136 4.5458 47 1 3.6326 -2.2719 5.6030 48 1 5.2471 -3.0371 5.7909 49 1 3.0192 -4.5987 5.4656 50 1 4.5544 -5.0457 4.6521 51 1 2.0707 -3.7978 3.4953 52 1 3.2915 -4.8253 2.6978 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001343244130.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:49:12 Heat of formation + Delta-G solvation = 75.844592 kcal Electronic energy + Delta-G solvation = -32185.720983 eV Core-core repulsion = 28187.881734 eV Total energy + Delta-G solvation = -3997.839250 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -44.04056 -40.37782 -39.44915 -37.04193 -36.10419 -34.43951 -33.91307 -33.06686 -31.63260 -31.23074 -30.34810 -28.86910 -27.22665 -26.36960 -25.82236 -25.01575 -23.79177 -22.73936 -22.43928 -21.60263 -20.67358 -18.85678 -18.61378 -18.25816 -17.70759 -17.63125 -17.13388 -16.69180 -16.48962 -16.12513 -16.03566 -15.63263 -15.36564 -14.99432 -14.64463 -14.45501 -14.31010 -13.98662 -13.90998 -13.65356 -13.49048 -13.32495 -13.00329 -12.91832 -12.77835 -12.73897 -12.66893 -12.62481 -12.53238 -12.33227 -12.23872 -12.14406 -11.94912 -11.79184 -11.72075 -11.47194 -11.38893 -11.19344 -11.16438 -11.05356 -10.54421 -10.45266 -10.37563 -9.37464 -8.14331 -6.25952 0.79267 1.09032 1.45134 1.46905 1.56986 1.82484 1.86349 1.89245 2.45222 2.71494 2.86495 3.19906 3.33561 3.43186 3.50970 3.56708 3.77268 3.81780 3.94870 3.96859 4.07826 4.15072 4.21220 4.25281 4.29861 4.38545 4.43633 4.47187 4.51859 4.54860 4.63849 4.69792 4.75981 4.84386 4.85568 4.87532 4.94872 5.01931 5.03278 5.08224 5.10589 5.15258 5.19213 5.26543 5.37290 5.47786 5.53809 5.61235 5.71622 5.85712 6.09565 6.20517 6.24104 6.65505 6.89945 7.43255 7.79816 8.98119 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011427 B = 0.003412 C = 0.002888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2449.817385 B = 8203.502051 C = 9692.050181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.219 4.219 3 C 0.210 3.790 4 H 0.064 0.936 5 C -0.128 4.128 6 N -0.438 5.438 7 C 0.027 3.973 8 C 0.363 3.637 9 N -0.357 5.357 10 N -0.326 5.326 11 C 0.201 3.799 12 C 0.012 3.988 13 H 0.095 0.905 14 C -0.117 4.117 15 C 0.052 3.948 16 C -0.526 4.526 17 H 0.078 0.922 18 C -0.002 4.002 19 N -0.937 5.937 20 Si 0.965 3.035 21 H -0.276 1.276 22 H -0.289 1.289 23 H -0.253 1.253 24 N -0.464 5.464 25 C 0.104 3.896 26 C 0.068 3.932 27 H 0.062 0.938 28 C -0.140 4.140 29 C -0.145 4.145 30 C 0.044 3.956 31 O -0.386 6.386 32 H 0.258 0.742 33 H 0.079 0.921 34 H 0.045 0.955 35 H 0.062 0.938 36 H 0.030 0.970 37 H 0.107 0.893 38 H 0.076 0.924 39 H 0.039 0.961 40 H 0.076 0.924 41 H 0.057 0.943 42 H -0.012 1.012 43 H -0.020 1.020 44 H 0.261 0.739 45 H 0.115 0.885 46 H 0.118 0.882 47 H 0.095 0.905 48 H 0.101 0.899 49 H 0.104 0.896 50 H 0.079 0.921 51 H 0.075 0.925 52 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.570 -14.180 3.647 26.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.220 4.220 3 C 0.104 3.896 4 H 0.082 0.918 5 C -0.186 4.186 6 N -0.162 5.162 7 C -0.119 4.119 8 C 0.005 3.995 9 N -0.201 5.201 10 N -0.164 5.164 11 C -0.068 4.068 12 C -0.009 4.009 13 H 0.113 0.887 14 C -0.175 4.175 15 C 0.014 3.986 16 C -0.564 4.564 17 H 0.096 0.904 18 C -0.199 4.199 19 N -0.578 5.578 20 Si 0.790 3.210 21 H -0.202 1.202 22 H -0.215 1.215 23 H -0.176 1.176 24 N -0.157 5.157 25 C -0.017 4.017 26 C 0.009 3.991 27 H 0.080 0.920 28 C -0.178 4.178 29 C -0.183 4.183 30 C -0.032 4.032 31 O -0.306 6.306 32 H 0.274 0.726 33 H 0.098 0.902 34 H 0.064 0.936 35 H 0.081 0.919 36 H 0.049 0.951 37 H 0.126 0.874 38 H 0.095 0.905 39 H 0.058 0.942 40 H 0.095 0.905 41 H 0.076 0.924 42 H 0.007 0.993 43 H -0.002 1.002 44 H 0.070 0.930 45 H 0.133 0.867 46 H 0.136 0.864 47 H 0.114 0.886 48 H 0.120 0.880 49 H 0.122 0.878 50 H 0.098 0.902 51 H 0.093 0.907 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -22.283 -13.841 2.343 26.336 hybrid contribution 0.787 0.697 1.030 1.472 sum -21.495 -13.144 3.373 25.420 Atomic orbital electron populations 1.25696 0.96254 0.98607 0.96398 1.22427 0.93456 1.02554 1.03547 1.18237 0.85705 0.99792 0.85902 0.91799 1.21677 1.00711 0.95814 1.00410 1.58808 0.98230 1.42365 1.16824 1.22594 1.02329 0.88863 0.98155 1.22325 0.90922 0.99808 0.86410 1.74453 0.96686 1.23033 1.25906 1.73894 1.12694 1.18945 1.10848 1.25311 0.86531 1.01419 0.93498 1.19727 0.86746 0.98480 0.95962 0.88692 1.21573 0.99654 0.96259 0.99987 1.18839 0.93673 0.90744 0.95387 1.21567 1.09306 0.97080 1.28423 0.90426 1.26003 1.01269 0.94791 0.97880 1.70158 1.38713 1.02754 1.46144 0.85444 0.78964 0.77766 0.78861 1.20210 1.21500 1.17647 1.46250 1.05356 1.49332 1.14714 1.22440 1.03435 0.94721 0.81143 1.23304 0.92388 0.91969 0.91403 0.91961 1.23255 1.02904 0.96836 0.94766 1.23084 1.01436 0.97276 0.96483 1.23253 0.97472 0.87484 0.95032 1.88580 1.50928 1.45329 1.45715 0.72622 0.90205 0.93551 0.91882 0.95145 0.87446 0.90512 0.94216 0.90506 0.92370 0.99348 1.00176 0.93040 0.86670 0.86356 0.88638 0.88008 0.87801 0.90210 0.90652 0.91935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.37 19.25 74.32 1.43 -0.94 16 2 C -0.22 -4.84 11.17 31.13 0.35 -4.49 16 3 C 0.21 5.76 2.20 43.11 0.09 5.85 16 4 H 0.06 1.96 7.90 -2.39 -0.02 1.94 16 5 C -0.13 -3.59 8.98 71.98 0.65 -2.94 16 6 N -0.44 -12.42 4.65 -717.00 -3.33 -15.75 16 7 C 0.03 0.64 9.06 127.69 1.16 1.80 16 8 C 0.36 12.83 6.00 260.11 1.56 14.39 16 9 N -0.36 -15.24 10.10 -58.00 -0.59 -15.83 16 10 N -0.33 -15.32 12.18 -49.54 -0.60 -15.92 16 11 C 0.20 8.33 6.58 137.64 0.91 9.24 16 12 C 0.01 0.48 2.71 -11.54 -0.03 0.45 16 13 H 0.09 3.38 7.02 -2.39 -0.02 3.37 16 14 C -0.12 -4.43 8.99 71.98 0.65 -3.78 16 15 C 0.05 2.75 4.43 29.85 0.13 2.88 16 16 C -0.53 -28.38 8.41 25.60 0.22 -28.16 16 17 H 0.08 3.81 7.06 -2.91 -0.02 3.79 16 18 C 0.00 -0.11 5.46 84.65 0.46 0.35 16 19 N -0.94 -57.72 13.29 21.45 0.28 -57.44 16 20 Si 0.97 43.02 29.54 68.60 2.03 45.05 16 21 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 22 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 23 H -0.25 -10.33 7.11 99.48 0.71 -9.62 16 24 N -0.46 -15.78 2.79 -514.85 -1.44 -17.21 16 25 C 0.10 2.53 5.53 86.38 0.48 3.01 16 26 C 0.07 1.45 3.69 31.26 0.12 1.56 16 27 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 28 C -0.14 -1.83 6.57 32.05 0.21 -1.62 16 29 C -0.15 -1.68 7.02 31.86 0.22 -1.46 16 30 C 0.04 0.73 7.79 72.45 0.56 1.29 16 31 O -0.39 -9.39 11.02 -148.98 -1.64 -11.03 16 32 H 0.26 1.59 7.80 -4.41 -0.03 1.55 16 33 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.05 1.58 6.29 -2.39 -0.01 1.57 16 35 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.03 0.78 8.14 -2.38 -0.02 0.76 16 37 H 0.11 2.01 7.04 -2.39 -0.02 1.99 16 38 H 0.08 1.68 6.87 -2.39 -0.02 1.67 16 39 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.08 2.84 6.95 -2.39 -0.02 2.83 16 41 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 42 H -0.01 -0.73 8.14 -2.38 -0.02 -0.75 16 43 H -0.02 -1.19 8.14 -2.39 -0.02 -1.21 16 44 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 45 H 0.12 2.40 6.80 -2.38 -0.02 2.38 16 46 H 0.12 2.63 7.37 -2.39 -0.02 2.61 16 47 H 0.10 1.03 8.06 -2.39 -0.02 1.01 16 48 H 0.10 1.13 8.14 -2.38 -0.02 1.11 16 49 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 50 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 51 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 52 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 Total: -1.00 -77.28 422.02 4.76 -72.52 By element: Atomic # 1 Polarization: 17.29 SS G_CDS: 0.89 Total: 18.17 kcal Atomic # 6 Polarization: -11.72 SS G_CDS: 9.16 Total: -2.56 kcal Atomic # 7 Polarization: -116.48 SS G_CDS: -5.67 Total: -122.15 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: -1.64 Total: -11.03 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.05 kcal Total: -77.28 4.76 -72.52 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343244130.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.362 kcal (2) G-P(sol) polarization free energy of solvation -77.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.518 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds