Wall clock time and date at job start Wed Apr 1 2020 04:53:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 H 1.08995 * 109.47184 * 23.69702 * 3 2 1 5 5 C 1.53008 * 109.46403 * 143.69192 * 3 2 1 6 6 N 1.46893 * 109.47141 * 263.69151 * 3 2 1 7 7 C 1.46902 * 110.99995 * 56.05149 * 6 3 2 8 8 C 1.38579 * 111.00036 * 180.02562 * 6 3 2 9 9 N 1.31223 * 126.47080 * 347.49739 * 8 6 3 10 10 N 1.28527 * 109.86148 * 179.97438 * 9 8 6 11 11 C 1.30298 * 110.05015 * 0.02562 * 10 9 8 12 12 C 1.50708 * 126.34500 * 179.97438 * 11 10 9 13 13 C 1.52994 * 109.46980 * 124.84176 * 12 11 10 14 14 C 1.53000 * 109.47007 * 244.84106 * 12 11 10 15 15 C 1.50699 * 109.47010 * 4.84235 * 12 11 10 16 16 H 1.08005 * 120.00239 * 358.35621 * 15 12 11 17 17 C 1.37873 * 119.99881 * 178.35514 * 15 12 11 18 18 N 1.31518 * 120.00246 * 2.98628 * 17 15 12 19 19 Si 1.86796 * 120.00190 * 182.99089 * 17 15 12 20 20 H 1.48500 * 109.47446 * 94.98877 * 19 17 15 21 21 H 1.48504 * 109.47464 * 214.98812 * 19 17 15 22 22 H 1.48508 * 109.47078 * 334.98690 * 19 17 15 23 23 N 1.36448 * 126.47443 * 167.18945 * 8 6 3 24 24 C 1.46493 * 127.13876 * 0.03742 * 23 8 6 25 25 C 1.53003 * 109.47401 * 96.98295 * 24 23 8 26 26 H 1.09000 * 110.27043 * 60.23943 * 25 24 23 27 27 C 1.54953 * 110.30789 * 182.32615 * 25 24 23 28 28 C 1.55418 * 100.88795 * 155.29266 * 27 25 24 29 29 C 1.54381 * 102.31017 * 325.98567 * 28 27 25 30 30 O 1.43243 * 107.58878 * 21.29113 * 29 28 27 31 31 H 4.18735 * 15.04022 * 0.02562 * 4 2 1 32 32 H 1.08995 * 109.47034 * 60.00418 * 5 3 2 33 33 H 1.09003 * 109.46565 * 179.97438 * 5 3 2 34 34 H 1.08997 * 109.47094 * 299.99884 * 5 3 2 35 35 H 1.09000 * 109.46898 * 209.15327 * 7 6 3 36 36 H 1.08999 * 109.47120 * 89.15323 * 7 6 3 37 37 H 1.09002 * 109.46684 * 329.15278 * 7 6 3 38 38 H 1.09006 * 109.47042 * 73.21351 * 13 12 11 39 39 H 1.08999 * 109.47084 * 193.20738 * 13 12 11 40 40 H 1.08999 * 109.47438 * 313.21160 * 13 12 11 41 41 H 1.09002 * 109.47068 * 30.01390 * 14 12 11 42 42 H 1.09000 * 109.46888 * 150.00441 * 14 12 11 43 43 H 1.08994 * 109.47403 * 270.01150 * 14 12 11 44 44 H 0.96996 * 120.00167 * 179.97438 * 18 17 15 45 45 H 1.09002 * 109.47676 * 216.98926 * 24 23 8 46 46 H 1.09004 * 109.47012 * 336.98110 * 24 23 8 47 47 H 1.09005 * 111.12308 * 273.27606 * 27 25 24 48 48 H 1.08992 * 111.12436 * 37.44056 * 27 25 24 49 49 H 1.09000 * 110.87414 * 207.75349 * 28 27 25 50 50 H 1.08994 * 110.94045 * 84.25198 * 28 27 25 51 51 H 1.09002 * 109.83338 * 261.77822 * 29 28 27 52 52 H 1.08994 * 109.90404 * 140.84264 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 1 3.0098 -0.9401 -0.4130 5 6 3.1554 1.1634 -0.8542 6 7 3.1356 0.1531 1.3765 7 6 2.5895 -0.8954 2.2486 8 6 4.5209 0.1583 1.4132 9 7 5.3284 -0.1788 0.4353 10 7 6.5499 -0.0552 0.8154 11 6 6.5939 0.3641 2.0483 12 6 7.8373 0.6326 2.8565 13 6 7.7981 2.0654 3.3916 14 6 7.9051 -0.3480 4.0290 15 6 9.0523 0.4557 1.9828 16 1 8.9373 0.1509 0.9531 17 6 10.3108 0.6831 2.4979 18 7 10.4552 0.9970 3.7669 19 14 11.8110 0.5453 1.3935 20 1 12.1679 1.8896 0.8732 21 1 12.9506 -0.0025 2.1724 22 1 11.5074 -0.3609 0.2568 23 7 5.3030 0.5205 2.4711 24 6 4.8529 0.9783 3.7878 25 6 4.8566 -0.1985 4.7656 26 1 5.8622 -0.6083 4.8595 27 6 4.3278 0.2516 6.1509 28 6 3.8123 -1.0991 6.7213 29 6 3.2987 -1.8168 5.4546 30 8 3.9427 -1.2155 4.3253 31 1 -1.0500 -0.0008 -0.0009 32 1 2.7916 2.1042 -0.4412 33 1 4.2454 1.1642 -0.8539 34 1 2.7921 1.0503 -1.8756 35 1 2.5113 -0.5161 3.2675 36 1 3.2507 -1.7617 2.2332 37 1 1.6013 -1.1861 1.8922 38 1 7.0673 2.1324 4.1976 39 1 8.7828 2.3388 3.7705 40 1 7.5162 2.7458 2.5881 41 1 7.4183 -1.2824 3.7497 42 1 8.9477 -0.5425 4.2801 43 1 7.3975 0.0822 4.8923 44 1 11.3406 1.1566 4.1294 45 1 5.5252 1.7553 4.1518 46 1 3.8430 1.3804 3.7071 47 1 5.1314 0.6580 6.7650 48 1 3.5142 0.9693 6.0464 49 1 3.0010 -0.9366 7.4310 50 1 4.6232 -1.6614 7.1840 51 1 2.2186 -1.6948 5.3727 52 1 3.5485 -2.8767 5.5017 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001343277029.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:11 Heat of formation + Delta-G solvation = 121.931753 kcal Electronic energy + Delta-G solvation = -33312.239086 eV Core-core repulsion = 29316.398325 eV Total energy + Delta-G solvation = -3995.840760 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.30118 -39.52732 -38.12408 -35.80983 -34.45979 -33.06900 -32.28012 -31.20353 -30.52044 -30.01013 -28.46947 -26.29358 -25.87310 -25.20059 -24.91832 -23.67543 -22.13558 -21.69521 -21.36444 -20.29158 -19.07492 -17.84135 -17.16201 -16.71827 -16.18585 -15.93635 -15.72446 -15.37582 -15.00626 -14.92513 -14.50742 -14.32481 -13.90027 -13.38617 -13.20153 -13.11701 -12.85198 -12.63899 -12.42843 -12.16223 -11.97497 -11.81977 -11.78008 -11.55134 -11.45754 -11.32367 -11.18853 -11.17774 -10.90993 -10.73135 -10.66380 -10.53013 -10.46970 -10.30128 -10.07811 -10.00145 -9.95705 -9.67651 -9.56547 -9.35308 -8.89872 -8.71284 -8.32554 -7.58764 -6.02591 -4.08169 2.41583 2.58778 2.79339 3.06804 3.34658 3.41491 3.50293 3.67414 3.76741 4.10081 4.32012 4.35786 4.45786 4.61881 4.73478 4.97515 5.02998 5.10870 5.17343 5.26240 5.28533 5.37753 5.43728 5.45406 5.54526 5.57695 5.60468 5.71538 5.74061 5.77381 5.83006 5.86110 6.02393 6.03129 6.12938 6.19219 6.30821 6.44598 6.50145 6.56669 6.65366 6.68490 6.76066 6.94054 6.98557 7.13972 7.26121 7.31733 7.53161 7.66373 7.86168 7.87653 8.08559 8.34728 9.00523 9.55207 9.72506 11.00657 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010548 B = 0.004472 C = 0.003364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2653.984240 B = 6259.135410 C = 8322.582896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.165 4.165 3 C 0.207 3.793 4 H 0.081 0.919 5 C -0.144 4.144 6 N -0.453 5.453 7 C 0.027 3.973 8 C 0.334 3.666 9 N -0.333 5.333 10 N -0.286 5.286 11 C 0.235 3.765 12 C 0.148 3.852 13 C -0.137 4.137 14 C -0.126 4.126 15 C -0.487 4.487 16 H 0.078 0.922 17 C 0.060 3.940 18 N -0.894 5.894 19 Si 0.898 3.102 20 H -0.282 1.282 21 H -0.288 1.288 22 H -0.271 1.271 23 N -0.470 5.470 24 C 0.109 3.891 25 C 0.045 3.955 26 H 0.103 0.897 27 C -0.147 4.147 28 C -0.152 4.152 29 C 0.047 3.953 30 O -0.366 6.366 31 H 0.218 0.782 32 H 0.057 0.943 33 H 0.088 0.912 34 H 0.062 0.938 35 H 0.094 0.906 36 H 0.047 0.953 37 H 0.064 0.936 38 H 0.015 0.985 39 H 0.101 0.899 40 H 0.026 0.974 41 H 0.021 0.979 42 H 0.093 0.907 43 H 0.023 0.977 44 H 0.260 0.740 45 H 0.115 0.885 46 H 0.094 0.906 47 H 0.089 0.911 48 H 0.079 0.921 49 H 0.080 0.920 50 H 0.078 0.922 51 H 0.066 0.934 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.857 -1.141 6.032 18.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.166 4.166 3 C 0.100 3.900 4 H 0.098 0.902 5 C -0.202 4.202 6 N -0.177 5.177 7 C -0.119 4.119 8 C -0.022 4.022 9 N -0.178 5.178 10 N -0.122 5.122 11 C -0.032 4.032 12 C 0.145 3.855 13 C -0.196 4.196 14 C -0.185 4.185 15 C -0.526 4.526 16 H 0.096 0.904 17 C -0.140 4.140 18 N -0.533 5.533 19 Si 0.726 3.274 20 H -0.208 1.208 21 H -0.214 1.214 22 H -0.196 1.196 23 N -0.164 5.164 24 C -0.015 4.015 25 C -0.012 4.012 26 H 0.120 0.880 27 C -0.185 4.185 28 C -0.190 4.190 29 C -0.030 4.030 30 O -0.286 6.286 31 H 0.235 0.765 32 H 0.077 0.923 33 H 0.107 0.893 34 H 0.081 0.919 35 H 0.112 0.888 36 H 0.065 0.935 37 H 0.082 0.918 38 H 0.034 0.966 39 H 0.120 0.880 40 H 0.046 0.954 41 H 0.040 0.960 42 H 0.112 0.888 43 H 0.042 0.958 44 H 0.070 0.930 45 H 0.132 0.868 46 H 0.113 0.887 47 H 0.108 0.892 48 H 0.098 0.902 49 H 0.099 0.901 50 H 0.096 0.904 51 H 0.085 0.915 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -17.445 -1.183 4.725 18.113 hybrid contribution 0.190 -0.270 0.838 0.900 sum -17.255 -1.453 5.563 18.188 Atomic orbital electron populations 1.24806 0.95664 1.01950 0.99686 1.22756 0.93792 0.99514 1.00492 1.18413 0.83584 1.00811 0.87214 0.90170 1.21892 1.03924 0.96347 0.98025 1.58682 1.00920 1.47725 1.10417 1.22868 0.98710 0.92643 0.97702 1.22088 0.89565 1.03373 0.87193 1.74515 0.97211 1.21765 1.24284 1.74041 1.10193 1.18392 1.09591 1.26042 0.85038 0.98894 0.93224 1.16865 0.84719 0.92880 0.91068 1.22068 1.03148 0.97008 0.97327 1.22041 1.03958 0.96762 0.95698 1.21137 0.88574 1.44787 0.98075 0.90424 1.24869 0.98827 0.95207 0.95110 1.69848 1.22953 1.48386 1.12135 0.86460 0.81906 0.78333 0.80727 1.20812 1.21429 1.19562 1.46052 1.06843 1.51599 1.11908 1.22185 1.02438 0.96481 0.80382 1.23925 0.96042 0.88844 0.92411 0.87997 1.23248 1.01750 0.97788 0.95753 1.23085 1.01668 0.96159 0.98073 1.23077 0.97174 0.97343 0.85386 1.88650 1.57559 1.52813 1.29596 0.76541 0.92348 0.89298 0.91870 0.88830 0.93454 0.91781 0.96613 0.88038 0.95441 0.96020 0.88833 0.95826 0.93001 0.86771 0.88749 0.89249 0.90217 0.90121 0.90372 0.91532 0.91648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.17 19.25 29.55 0.57 -1.60 16 2 C -0.16 -2.17 10.87 -37.12 -0.40 -2.57 16 3 C 0.21 3.11 2.19 -70.50 -0.15 2.96 16 4 H 0.08 1.29 7.98 -51.93 -0.41 0.87 16 5 C -0.14 -2.16 8.96 37.16 0.33 -1.83 16 6 N -0.45 -7.28 4.59 -177.98 -0.82 -8.10 16 7 C 0.03 0.39 7.90 60.07 0.47 0.86 16 8 C 0.33 6.45 6.13 -318.88 -1.96 4.50 16 9 N -0.33 -7.41 9.55 30.31 0.29 -7.12 16 10 N -0.29 -7.09 11.00 32.99 0.36 -6.73 16 11 C 0.24 5.37 6.11 -154.01 -0.94 4.43 16 12 C 0.15 3.46 0.54 -156.81 -0.08 3.38 16 13 C -0.14 -3.01 7.89 37.15 0.29 -2.72 16 14 C -0.13 -2.78 7.11 37.16 0.26 -2.52 16 15 C -0.49 -13.02 7.89 -34.44 -0.27 -13.29 16 16 H 0.08 2.22 6.95 -52.48 -0.36 1.85 16 17 C 0.06 1.56 4.87 -17.82 -0.09 1.48 16 18 N -0.89 -23.16 9.58 55.43 0.53 -22.63 16 19 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 21 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 23 N -0.47 -8.98 2.73 -114.08 -0.31 -9.29 16 24 C 0.11 1.63 4.96 -4.04 -0.02 1.61 16 25 C 0.05 0.61 3.46 -25.70 -0.09 0.52 16 26 H 0.10 1.62 4.11 -51.93 -0.21 1.41 16 27 C -0.15 -1.43 6.58 -24.42 -0.16 -1.59 16 28 C -0.15 -1.30 7.02 -24.72 -0.17 -1.47 16 29 C 0.05 0.47 7.68 37.88 0.29 0.76 16 30 O -0.37 -4.98 5.94 -35.23 -0.21 -5.19 16 31 H 0.22 1.45 7.80 -54.09 -0.42 1.02 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.09 1.59 5.91 -51.93 -0.31 1.28 16 34 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.09 1.26 5.40 -51.93 -0.28 0.98 16 36 H 0.05 0.77 7.09 -51.93 -0.37 0.40 16 37 H 0.06 0.82 6.29 -51.93 -0.33 0.49 16 38 H 0.02 0.29 5.10 -51.93 -0.27 0.02 16 39 H 0.10 2.45 5.80 -51.93 -0.30 2.15 16 40 H 0.03 0.60 8.07 -51.93 -0.42 0.18 16 41 H 0.02 0.47 7.41 -51.93 -0.38 0.08 16 42 H 0.09 2.30 5.97 -51.93 -0.31 1.99 16 43 H 0.02 0.45 5.85 -51.93 -0.30 0.14 16 44 H 0.26 6.52 8.31 -40.82 -0.34 6.19 16 45 H 0.11 1.69 4.96 -51.93 -0.26 1.43 16 46 H 0.09 1.28 7.93 -51.93 -0.41 0.87 16 47 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 48 H 0.08 0.68 8.06 -51.93 -0.42 0.26 16 49 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 50 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 51 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 52 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 389.66 15.07 5.87 5.87 Total: -1.00 -29.97 389.66 -9.28 -39.25 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: -7.86 Total: 4.91 kcal Atomic # 6 Polarization: -4.97 SS G_CDS: -2.11 Total: -7.08 kcal Atomic # 7 Polarization: -53.92 SS G_CDS: 0.06 Total: -53.87 kcal Atomic # 8 Polarization: -4.98 SS G_CDS: -0.21 Total: -5.19 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -29.97 -9.28 -39.25 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343277029.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.182 kcal (2) G-P(sol) polarization free energy of solvation -29.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds