Wall clock time and date at job start Wed Apr 1 2020 04:53:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 H 1.08995 * 109.47184 * 23.69702 * 3 2 1 5 5 C 1.53008 * 109.46403 * 143.69192 * 3 2 1 6 6 N 1.46893 * 109.47141 * 263.69151 * 3 2 1 7 7 C 1.46902 * 110.99995 * 56.05149 * 6 3 2 8 8 C 1.38579 * 111.00036 * 180.02562 * 6 3 2 9 9 N 1.31223 * 126.47080 * 347.49739 * 8 6 3 10 10 N 1.28527 * 109.86148 * 179.97438 * 9 8 6 11 11 C 1.30298 * 110.05015 * 0.02562 * 10 9 8 12 12 C 1.50708 * 126.34500 * 179.97438 * 11 10 9 13 13 C 1.52994 * 109.46980 * 124.84176 * 12 11 10 14 14 C 1.53000 * 109.47007 * 244.84106 * 12 11 10 15 15 C 1.50699 * 109.47010 * 4.84235 * 12 11 10 16 16 H 1.08005 * 120.00239 * 358.35621 * 15 12 11 17 17 C 1.37873 * 119.99881 * 178.35514 * 15 12 11 18 18 N 1.31518 * 120.00246 * 2.98628 * 17 15 12 19 19 Si 1.86796 * 120.00190 * 182.99089 * 17 15 12 20 20 H 1.48500 * 109.47446 * 94.98877 * 19 17 15 21 21 H 1.48504 * 109.47464 * 214.98812 * 19 17 15 22 22 H 1.48508 * 109.47078 * 334.98690 * 19 17 15 23 23 N 1.36448 * 126.47443 * 167.18945 * 8 6 3 24 24 C 1.46493 * 127.13876 * 0.03742 * 23 8 6 25 25 C 1.53003 * 109.47401 * 96.98295 * 24 23 8 26 26 H 1.09000 * 110.27043 * 60.23943 * 25 24 23 27 27 C 1.54953 * 110.30789 * 182.32615 * 25 24 23 28 28 C 1.55418 * 100.88795 * 155.29266 * 27 25 24 29 29 C 1.54381 * 102.31017 * 325.98567 * 28 27 25 30 30 O 1.43243 * 107.58878 * 21.29113 * 29 28 27 31 31 H 4.18735 * 15.04022 * 0.02562 * 4 2 1 32 32 H 1.08995 * 109.47034 * 60.00418 * 5 3 2 33 33 H 1.09003 * 109.46565 * 179.97438 * 5 3 2 34 34 H 1.08997 * 109.47094 * 299.99884 * 5 3 2 35 35 H 1.09000 * 109.46898 * 209.15327 * 7 6 3 36 36 H 1.08999 * 109.47120 * 89.15323 * 7 6 3 37 37 H 1.09002 * 109.46684 * 329.15278 * 7 6 3 38 38 H 1.09006 * 109.47042 * 73.21351 * 13 12 11 39 39 H 1.08999 * 109.47084 * 193.20738 * 13 12 11 40 40 H 1.08999 * 109.47438 * 313.21160 * 13 12 11 41 41 H 1.09002 * 109.47068 * 30.01390 * 14 12 11 42 42 H 1.09000 * 109.46888 * 150.00441 * 14 12 11 43 43 H 1.08994 * 109.47403 * 270.01150 * 14 12 11 44 44 H 0.96996 * 120.00167 * 179.97438 * 18 17 15 45 45 H 1.09002 * 109.47676 * 216.98926 * 24 23 8 46 46 H 1.09004 * 109.47012 * 336.98110 * 24 23 8 47 47 H 1.09005 * 111.12308 * 273.27606 * 27 25 24 48 48 H 1.08992 * 111.12436 * 37.44056 * 27 25 24 49 49 H 1.09000 * 110.87414 * 207.75349 * 28 27 25 50 50 H 1.08994 * 110.94045 * 84.25198 * 28 27 25 51 51 H 1.09002 * 109.83338 * 261.77822 * 29 28 27 52 52 H 1.08994 * 109.90404 * 140.84264 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 1 3.0098 -0.9401 -0.4130 5 6 3.1554 1.1634 -0.8542 6 7 3.1356 0.1531 1.3765 7 6 2.5895 -0.8954 2.2486 8 6 4.5209 0.1583 1.4132 9 7 5.3284 -0.1788 0.4353 10 7 6.5499 -0.0552 0.8154 11 6 6.5939 0.3641 2.0483 12 6 7.8373 0.6326 2.8565 13 6 7.7981 2.0654 3.3916 14 6 7.9051 -0.3480 4.0290 15 6 9.0523 0.4557 1.9828 16 1 8.9373 0.1509 0.9531 17 6 10.3108 0.6831 2.4979 18 7 10.4552 0.9970 3.7669 19 14 11.8110 0.5453 1.3935 20 1 12.1679 1.8896 0.8732 21 1 12.9506 -0.0025 2.1724 22 1 11.5074 -0.3609 0.2568 23 7 5.3030 0.5205 2.4711 24 6 4.8529 0.9783 3.7878 25 6 4.8566 -0.1985 4.7656 26 1 5.8622 -0.6083 4.8595 27 6 4.3278 0.2516 6.1509 28 6 3.8123 -1.0991 6.7213 29 6 3.2987 -1.8168 5.4546 30 8 3.9427 -1.2155 4.3253 31 1 -1.0500 -0.0008 -0.0009 32 1 2.7916 2.1042 -0.4412 33 1 4.2454 1.1642 -0.8539 34 1 2.7921 1.0503 -1.8756 35 1 2.5113 -0.5161 3.2675 36 1 3.2507 -1.7617 2.2332 37 1 1.6013 -1.1861 1.8922 38 1 7.0673 2.1324 4.1976 39 1 8.7828 2.3388 3.7705 40 1 7.5162 2.7458 2.5881 41 1 7.4183 -1.2824 3.7497 42 1 8.9477 -0.5425 4.2801 43 1 7.3975 0.0822 4.8923 44 1 11.3406 1.1566 4.1294 45 1 5.5252 1.7553 4.1518 46 1 3.8430 1.3804 3.7071 47 1 5.1314 0.6580 6.7650 48 1 3.5142 0.9693 6.0464 49 1 3.0010 -0.9366 7.4310 50 1 4.6232 -1.6614 7.1840 51 1 2.2186 -1.6948 5.3727 52 1 3.5485 -2.8767 5.5017 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001343277029.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:10 Heat of formation + Delta-G solvation = 106.773921 kcal Electronic energy + Delta-G solvation = -33312.896379 eV Core-core repulsion = 29316.398325 eV Total energy + Delta-G solvation = -3996.498053 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -43.89264 -40.47283 -39.41456 -37.56001 -35.92688 -34.20584 -33.15403 -33.04746 -31.61772 -31.16082 -30.06130 -27.91452 -27.37000 -26.93645 -26.17289 -24.92134 -23.61675 -22.68478 -22.41895 -21.74757 -20.68386 -18.85431 -18.39526 -18.05485 -17.52284 -17.33305 -16.93927 -16.83976 -16.79412 -16.02341 -15.81221 -15.48227 -15.17280 -15.03672 -14.57778 -14.28788 -14.06886 -13.99523 -13.68592 -13.39462 -13.36634 -13.11647 -13.03932 -12.89084 -12.85680 -12.73852 -12.61846 -12.46841 -12.34628 -12.17878 -12.02416 -11.95884 -11.79432 -11.75228 -11.60905 -11.60289 -11.36017 -11.20044 -10.97283 -10.76895 -10.45808 -10.29702 -10.19261 -9.16509 -8.03948 -6.14183 0.98993 1.24765 1.43436 1.46367 1.57887 1.87588 1.90261 2.06998 2.49830 2.71810 2.95314 3.22383 3.36542 3.53788 3.61878 3.70270 3.87551 3.97593 3.99836 4.10483 4.17782 4.21419 4.28933 4.35982 4.47503 4.49018 4.58860 4.61999 4.69410 4.77324 4.82946 4.83754 4.86892 4.90001 4.95647 4.97422 5.02064 5.03835 5.08115 5.13334 5.18225 5.23576 5.28569 5.30356 5.44373 5.63620 5.69380 5.84661 6.01819 6.03472 6.08203 6.35746 6.46153 6.65088 6.89780 7.51105 8.04959 8.97219 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010548 B = 0.004472 C = 0.003364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2653.984240 B = 6259.135410 C = 8322.582896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.221 4.221 3 C 0.208 3.792 4 H 0.061 0.939 5 C -0.138 4.138 6 N -0.446 5.446 7 C 0.038 3.962 8 C 0.351 3.649 9 N -0.363 5.363 10 N -0.332 5.332 11 C 0.222 3.778 12 C 0.145 3.855 13 C -0.125 4.125 14 C -0.107 4.107 15 C -0.512 4.512 16 H 0.048 0.952 17 C 0.032 3.968 18 N -0.897 5.897 19 Si 0.943 3.057 20 H -0.278 1.278 21 H -0.278 1.278 22 H -0.285 1.285 23 N -0.465 5.465 24 C 0.102 3.898 25 C 0.046 3.954 26 H 0.074 0.926 27 C -0.138 4.138 28 C -0.144 4.144 29 C 0.039 3.961 30 O -0.389 6.389 31 H 0.260 0.740 32 H 0.061 0.939 33 H 0.054 0.946 34 H 0.080 0.920 35 H 0.107 0.893 36 H 0.022 0.978 37 H 0.083 0.917 38 H 0.050 0.950 39 H 0.081 0.919 40 H 0.016 0.984 41 H 0.010 0.990 42 H 0.067 0.933 43 H 0.052 0.948 44 H 0.263 0.737 45 H 0.117 0.883 46 H 0.114 0.886 47 H 0.097 0.903 48 H 0.099 0.901 49 H 0.108 0.892 50 H 0.074 0.926 51 H 0.087 0.913 52 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.254 -0.502 8.037 22.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.222 4.222 3 C 0.102 3.898 4 H 0.078 0.922 5 C -0.195 4.195 6 N -0.171 5.171 7 C -0.108 4.108 8 C -0.007 4.007 9 N -0.207 5.207 10 N -0.169 5.169 11 C -0.047 4.047 12 C 0.142 3.858 13 C -0.183 4.183 14 C -0.165 4.165 15 C -0.551 4.551 16 H 0.066 0.934 17 C -0.167 4.167 18 N -0.536 5.536 19 Si 0.770 3.230 20 H -0.204 1.204 21 H -0.203 1.203 22 H -0.210 1.210 23 N -0.158 5.158 24 C -0.019 4.019 25 C -0.012 4.012 26 H 0.091 0.909 27 C -0.176 4.176 28 C -0.182 4.182 29 C -0.037 4.037 30 O -0.309 6.309 31 H 0.276 0.724 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.099 0.901 35 H 0.125 0.875 36 H 0.041 0.959 37 H 0.101 0.899 38 H 0.068 0.932 39 H 0.099 0.901 40 H 0.035 0.965 41 H 0.029 0.971 42 H 0.086 0.914 43 H 0.071 0.929 44 H 0.073 0.927 45 H 0.134 0.866 46 H 0.132 0.868 47 H 0.115 0.885 48 H 0.117 0.883 49 H 0.126 0.874 50 H 0.093 0.907 51 H 0.105 0.895 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -20.854 -0.542 6.761 21.929 hybrid contribution 1.069 -0.505 0.182 1.196 sum -19.785 -1.048 6.943 20.994 Atomic orbital electron populations 1.25723 0.96230 0.98545 0.96273 1.22451 0.93491 1.02611 1.03622 1.18252 0.85568 0.99684 0.86316 0.92163 1.21800 1.01615 0.96746 0.99381 1.58901 0.98590 1.48078 1.11562 1.22838 0.98732 0.91147 0.98039 1.22416 0.90752 1.01096 0.86391 1.74421 0.96847 1.23681 1.25791 1.73932 1.11881 1.19947 1.11158 1.25763 0.86255 0.99723 0.92971 1.16797 0.84043 0.93941 0.91017 1.21893 1.02921 0.95640 0.97865 1.21808 1.02319 0.96137 0.96228 1.21205 0.90627 1.45803 0.97438 0.93408 1.25297 1.00250 0.95029 0.96157 1.69900 1.23409 1.47967 1.12369 0.85781 0.79996 0.78036 0.79207 1.20394 1.20291 1.21012 1.46140 1.05494 1.50909 1.13213 1.22528 1.03290 0.97402 0.78719 1.23775 0.95119 0.88251 0.94072 0.90886 1.23258 1.02509 0.98793 0.93075 1.23079 1.02379 0.95028 0.97695 1.23298 0.98068 0.97154 0.85197 1.88626 1.57603 1.53086 1.31605 0.72419 0.91971 0.92706 0.90112 0.87470 0.95914 0.89888 0.93150 0.90070 0.96516 0.97130 0.91443 0.92936 0.92730 0.86554 0.86754 0.88482 0.88258 0.87388 0.90746 0.89500 0.92042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.56 19.25 74.32 1.43 -1.12 16 2 C -0.22 -5.30 10.87 31.13 0.34 -4.97 16 3 C 0.21 6.26 2.19 43.11 0.09 6.36 16 4 H 0.06 2.02 7.98 -2.39 -0.02 2.00 16 5 C -0.14 -4.19 8.96 71.98 0.65 -3.55 16 6 N -0.45 -14.13 4.59 -717.01 -3.29 -17.42 16 7 C 0.04 1.04 7.90 127.69 1.01 2.05 16 8 C 0.35 13.87 6.13 260.11 1.60 15.46 16 9 N -0.36 -17.07 9.55 -58.00 -0.55 -17.62 16 10 N -0.33 -17.52 11.00 -49.53 -0.54 -18.06 16 11 C 0.22 10.54 6.11 137.64 0.84 11.38 16 12 C 0.14 7.01 0.54 -53.67 -0.03 6.98 16 13 C -0.13 -5.52 7.89 71.98 0.57 -4.96 16 14 C -0.11 -4.79 7.11 71.98 0.51 -4.28 16 15 C -0.51 -28.61 7.89 25.60 0.20 -28.41 16 16 H 0.05 2.91 6.95 -2.91 -0.02 2.89 16 17 C 0.03 1.72 4.87 84.65 0.41 2.13 16 18 N -0.90 -46.97 9.58 21.45 0.21 -46.77 16 19 Si 0.94 44.39 29.54 68.60 2.03 46.41 16 20 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 21 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 22 H -0.28 -13.94 7.11 99.48 0.71 -13.23 16 23 N -0.46 -17.95 2.73 -514.84 -1.41 -19.35 16 24 C 0.10 2.92 4.96 86.38 0.43 3.35 16 25 C 0.05 1.16 3.46 31.26 0.11 1.27 16 26 H 0.07 2.28 4.11 -2.39 -0.01 2.27 16 27 C -0.14 -2.21 6.58 32.09 0.21 -2.00 16 28 C -0.14 -1.97 7.02 31.89 0.22 -1.75 16 29 C 0.04 0.68 7.68 72.45 0.56 1.23 16 30 O -0.39 -10.01 5.94 -148.98 -0.88 -10.90 16 31 H 0.26 1.85 7.80 -4.42 -0.03 1.81 16 32 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.05 2.06 5.91 -2.39 -0.01 2.04 16 34 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 35 H 0.11 2.60 5.40 -2.39 -0.01 2.59 16 36 H 0.02 0.72 7.09 -2.39 -0.02 0.71 16 37 H 0.08 1.93 6.29 -2.39 -0.02 1.91 16 38 H 0.05 1.82 5.10 -2.38 -0.01 1.80 16 39 H 0.08 3.95 5.80 -2.39 -0.01 3.93 16 40 H 0.02 0.72 8.07 -2.39 -0.02 0.70 16 41 H 0.01 0.45 7.41 -2.39 -0.02 0.43 16 42 H 0.07 3.38 5.97 -2.39 -0.01 3.37 16 43 H 0.05 1.99 5.85 -2.39 -0.01 1.98 16 44 H 0.26 13.19 8.31 -92.71 -0.77 12.42 16 45 H 0.12 3.22 4.96 -2.39 -0.01 3.21 16 46 H 0.11 2.79 7.93 -2.38 -0.02 2.78 16 47 H 0.10 1.44 8.14 -2.38 -0.02 1.42 16 48 H 0.10 1.23 8.06 -2.39 -0.02 1.21 16 49 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 50 H 0.07 1.08 8.14 -2.39 -0.02 1.07 16 51 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 52 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -69.81 389.66 5.63 -64.18 By element: Atomic # 1 Polarization: 19.43 SS G_CDS: 0.93 Total: 20.36 kcal Atomic # 6 Polarization: -9.98 SS G_CDS: 9.15 Total: -0.83 kcal Atomic # 7 Polarization: -113.64 SS G_CDS: -5.59 Total: -119.23 kcal Atomic # 8 Polarization: -10.01 SS G_CDS: -0.88 Total: -10.90 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.41 kcal Total: -69.81 5.63 -64.18 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343277029.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.957 kcal (2) G-P(sol) polarization free energy of solvation -69.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds