Wall clock time and date at job start Wed Apr 1 2020 04:46:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50707 * 120.00065 * 2 1 4 4 C 1.50699 * 120.00464 * 180.02562 * 2 1 3 5 5 N 1.46501 * 109.47108 * 94.99606 * 4 2 1 6 6 C 1.36739 * 127.13561 * 270.18031 * 5 4 2 7 7 C 1.50697 * 126.34988 * 359.96274 * 6 5 4 8 8 H 1.09002 * 109.47293 * 0.29097 * 7 6 5 9 9 C 1.52996 * 109.47254 * 240.28827 * 7 6 5 10 10 C 1.53004 * 109.46978 * 120.29063 * 7 6 5 11 11 C 1.50701 * 109.47088 * 185.00193 * 10 7 6 12 12 H 1.08001 * 120.00161 * 359.97438 * 11 10 7 13 13 C 1.37875 * 119.99734 * 179.97438 * 11 10 7 14 14 N 1.31509 * 120.00420 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 119.99563 * 179.97438 * 13 11 10 16 16 H 1.48492 * 109.47542 * 0.02562 * 15 13 11 17 17 H 1.48499 * 109.47193 * 120.00567 * 15 13 11 18 18 H 1.48509 * 109.47094 * 240.00035 * 15 13 11 19 19 N 1.30297 * 107.30115 * 180.22975 * 6 5 4 20 20 N 1.28529 * 110.05464 * 359.77375 * 19 6 5 21 21 C 1.31209 * 109.86087 * 359.97438 * 20 19 6 22 22 N 1.38583 * 126.47530 * 179.97438 * 21 20 19 23 23 C 1.48709 * 111.04452 * 242.57088 * 22 21 20 24 24 C 1.55187 * 103.41594 * 159.08648 * 23 22 21 25 25 C 1.53557 * 102.61031 * 323.52799 * 24 23 22 26 26 C 1.52897 * 115.62188 * 151.59643 * 25 24 23 27 27 O 1.44402 * 85.14971 * 95.02754 * 26 25 24 28 28 C 1.44404 * 93.54135 * 23.37752 * 27 26 25 29 29 C 1.48213 * 110.99776 * 0.02612 * 22 21 20 30 30 H 1.08000 * 119.99736 * 359.97438 * 1 2 3 31 31 H 1.07996 * 120.00043 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47241 * 240.00173 * 3 2 1 33 33 H 1.09007 * 109.46903 * 0.02562 * 3 2 1 34 34 H 1.09002 * 109.46682 * 119.99673 * 3 2 1 35 35 H 1.09003 * 109.46451 * 335.00330 * 4 2 1 36 36 H 1.08992 * 109.47296 * 214.99839 * 4 2 1 37 37 H 1.08996 * 109.47278 * 60.00149 * 9 7 6 38 38 H 1.09000 * 109.47459 * 180.02562 * 9 7 6 39 39 H 1.08998 * 109.47264 * 299.99826 * 9 7 6 40 40 H 1.08999 * 109.46845 * 305.00015 * 10 7 6 41 41 H 1.08993 * 109.47486 * 64.99836 * 10 7 6 42 42 H 0.97004 * 120.00251 * 179.97438 * 14 13 11 43 43 H 1.09001 * 110.59922 * 40.61429 * 23 22 21 44 44 H 1.08994 * 110.78235 * 277.65008 * 23 22 21 45 45 H 1.09002 * 110.77924 * 205.24515 * 24 23 22 46 46 H 1.09007 * 110.94288 * 81.88168 * 24 23 22 47 47 H 1.09004 * 113.92098 * 209.07895 * 26 25 24 48 48 H 1.08993 * 113.92774 * 340.97350 * 26 25 24 49 49 H 1.08994 * 113.92761 * 222.57117 * 28 27 26 50 50 H 1.09008 * 113.92468 * 90.66867 * 28 27 26 51 51 H 1.09002 * 110.03338 * 95.04202 * 29 22 21 52 52 H 1.08995 * 110.03184 * 333.65985 * 29 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 2.0636 -1.3050 -0.0006 5 7 2.4120 -1.6672 -1.3767 6 6 1.6663 -2.4114 -2.2485 7 6 0.3164 -3.0221 -1.9735 8 1 0.0069 -2.7770 -0.9575 9 6 0.4031 -4.5417 -2.1277 10 6 -0.7066 -2.4663 -2.9663 11 6 -2.0786 -2.9815 -2.6153 12 1 -2.2080 -3.6399 -1.7690 13 6 -3.1686 -2.6124 -3.3745 14 7 -3.0112 -1.8103 -4.4047 15 14 -4.8691 -3.2517 -2.9398 16 1 -4.7776 -4.1300 -1.7459 17 1 -5.7676 -2.1070 -2.6439 18 1 -5.4143 -4.0259 -4.0838 19 7 2.3420 -2.4994 -3.3591 20 7 3.4531 -1.8624 -3.2507 21 6 3.5463 -1.3290 -2.0556 22 7 4.6007 -0.5709 -1.5718 23 6 5.2498 -1.2377 -0.4118 24 6 6.6564 -0.5841 -0.3615 25 6 6.9942 -0.4007 -1.8482 26 6 7.9297 0.7637 -2.1750 27 8 8.9803 -0.2255 -2.1211 28 6 8.0835 -1.3232 -2.3968 29 6 5.6605 -0.4198 -2.5968 30 1 -0.5400 0.9353 0.0004 31 1 -0.5400 -0.9353 -0.0004 32 1 2.6902 1.3629 -0.8900 33 1 1.3552 2.1337 0.0005 34 1 2.6902 1.3628 0.8901 35 1 1.4386 -2.0856 0.4334 36 1 2.9743 -1.1990 0.5888 37 1 1.1318 -4.9377 -1.4204 38 1 -0.5734 -4.9835 -1.9292 39 1 0.7125 -4.7868 -3.1437 40 1 -0.7043 -1.3773 -2.9189 41 1 -0.4453 -2.7865 -3.9748 42 1 -3.7781 -1.5510 -4.9391 43 1 5.3309 -2.3112 -0.5827 44 1 4.6997 -1.0368 0.5074 45 1 7.3745 -1.2483 0.1193 46 1 6.6206 0.3786 0.1485 47 1 7.7747 1.1905 -3.1660 48 1 7.9903 1.5161 -1.3887 49 1 8.2645 -2.2064 -1.7844 50 1 7.9767 -1.5511 -3.4574 51 1 5.5239 0.5152 -3.1402 52 1 5.6329 -1.2611 -3.2892 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001343751947.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:51 Heat of formation + Delta-G solvation = 94.406381 kcal Electronic energy + Delta-G solvation = -31915.313847 eV Core-core repulsion = 27918.279497 eV Total energy + Delta-G solvation = -3997.034350 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.70679 -41.32773 -38.02670 -36.77023 -35.18643 -33.23827 -32.49214 -31.73424 -29.88243 -28.17928 -27.47241 -27.02559 -26.92868 -26.77201 -24.99683 -24.07560 -22.79824 -21.92333 -20.80612 -19.42602 -19.21906 -18.49587 -17.28334 -16.73812 -16.63712 -16.12433 -15.99295 -15.85465 -15.54804 -15.26985 -14.59451 -14.52483 -14.24178 -13.86210 -13.67151 -13.41588 -13.25825 -13.08854 -12.83820 -12.50906 -12.41471 -12.24821 -12.10314 -11.90347 -11.81804 -11.59280 -11.36094 -11.28154 -11.12588 -10.95457 -10.94340 -10.86244 -10.66129 -10.48109 -10.36886 -10.00873 -9.98910 -9.74954 -9.71340 -9.31494 -9.12746 -9.08377 -8.37820 -7.98083 -6.01089 -4.04829 1.91591 2.15008 2.73995 3.26354 3.29040 3.30645 3.37263 3.39413 3.66070 3.85904 4.01168 4.22989 4.42664 4.46901 4.67994 4.70479 4.81076 4.91800 4.96736 4.98829 5.06522 5.14849 5.19176 5.25294 5.34317 5.35276 5.38854 5.45558 5.53532 5.54315 5.57400 5.64504 5.70363 5.72197 5.75521 5.79784 5.96133 6.03400 6.05276 6.07274 6.16161 6.26975 6.45585 6.61458 6.69030 6.77949 6.82173 6.89677 7.02879 7.40015 7.63696 7.78625 7.98541 8.34004 9.01075 9.22601 9.58814 11.09859 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.018740 B = 0.002739 C = 0.002584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.791979 B =10221.780069 C =10832.623713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.170 4.170 3 C -0.109 4.109 4 C 0.148 3.852 5 N -0.475 5.475 6 C 0.218 3.782 7 C -0.001 4.001 8 H 0.070 0.930 9 C -0.127 4.127 10 C 0.041 3.959 11 C -0.519 4.519 12 H 0.058 0.942 13 C 0.060 3.940 14 N -0.889 5.889 15 Si 0.889 3.111 16 H -0.273 1.273 17 H -0.285 1.285 18 H -0.284 1.284 19 N -0.284 5.284 20 N -0.324 5.324 21 C 0.326 3.674 22 N -0.428 5.428 23 C 0.034 3.966 24 C -0.094 4.094 25 C -0.140 4.140 26 C 0.053 3.947 27 O -0.382 6.382 28 C 0.049 3.951 29 C 0.056 3.944 30 H 0.104 0.896 31 H 0.109 0.891 32 H 0.071 0.929 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.098 0.902 36 H 0.094 0.906 37 H 0.030 0.970 38 H 0.075 0.925 39 H 0.060 0.940 40 H 0.015 0.985 41 H 0.030 0.970 42 H 0.260 0.740 43 H 0.056 0.944 44 H 0.090 0.910 45 H 0.084 0.916 46 H 0.087 0.913 47 H 0.086 0.914 48 H 0.094 0.906 49 H 0.092 0.908 50 H 0.087 0.913 51 H 0.093 0.907 52 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.181 4.380 12.464 23.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.171 4.171 3 C -0.166 4.166 4 C 0.026 3.974 5 N -0.169 5.169 6 C -0.050 4.050 7 C -0.022 4.022 8 H 0.088 0.912 9 C -0.185 4.185 10 C 0.003 3.997 11 C -0.557 4.557 12 H 0.076 0.924 13 C -0.142 4.142 14 N -0.528 5.528 15 Si 0.717 3.283 16 H -0.197 1.197 17 H -0.211 1.211 18 H -0.210 1.210 19 N -0.122 5.122 20 N -0.168 5.168 21 C -0.031 4.031 22 N -0.152 5.152 23 C -0.093 4.093 24 C -0.132 4.132 25 C -0.141 4.141 26 C -0.023 4.023 27 O -0.300 6.300 28 C -0.028 4.028 29 C -0.071 4.071 30 H 0.122 0.878 31 H 0.128 0.872 32 H 0.089 0.911 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.117 0.883 36 H 0.112 0.888 37 H 0.049 0.951 38 H 0.093 0.907 39 H 0.080 0.920 40 H 0.033 0.967 41 H 0.049 0.951 42 H 0.070 0.930 43 H 0.075 0.925 44 H 0.109 0.891 45 H 0.103 0.897 46 H 0.106 0.894 47 H 0.104 0.896 48 H 0.112 0.888 49 H 0.110 0.890 50 H 0.105 0.895 51 H 0.111 0.889 52 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 19.542 4.601 11.098 22.940 hybrid contribution -1.405 -0.409 1.173 1.875 sum 18.137 4.192 12.272 22.296 Atomic orbital electron populations 1.24070 0.94933 1.03260 0.95470 1.21701 0.95560 0.95019 1.04832 1.20758 0.99941 0.93677 1.02175 1.20827 1.00887 0.95861 0.79833 1.46319 1.15308 1.41692 1.13564 1.25571 0.97563 0.95782 0.86048 1.19990 0.85261 0.95176 1.01773 0.91223 1.21688 1.01545 0.93764 1.01481 1.19081 0.91026 0.95914 0.93711 1.21156 0.91756 1.29398 1.13437 0.92375 1.24988 0.99029 0.95119 0.95035 1.69991 1.30486 1.34609 1.17673 0.86585 0.84611 0.78693 0.78387 1.19726 1.21115 1.20992 1.74002 1.00474 1.18303 1.19376 1.74450 1.14932 1.12835 1.14559 1.22549 0.89762 0.99640 0.91137 1.61638 1.05774 1.40164 1.07583 1.23503 0.94605 0.97321 0.93888 1.22220 0.95176 1.02204 0.93596 1.23879 0.95411 0.97269 0.97569 1.23936 0.84019 0.92324 1.02060 1.89733 1.30253 1.17972 1.92076 1.23995 0.86043 0.91708 1.01027 1.22816 0.86437 1.04529 0.93307 0.87797 0.87241 0.91065 0.92196 0.92141 0.88347 0.88817 0.95096 0.90660 0.92045 0.96678 0.95130 0.92992 0.92540 0.89139 0.89746 0.89435 0.89607 0.88810 0.89024 0.89472 0.88874 0.89649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 13.90 29.01 0.40 -1.54 16 2 C -0.17 -2.19 5.64 -101.06 -0.57 -2.76 16 3 C -0.11 -1.23 10.12 36.01 0.36 -0.86 16 4 C 0.15 1.84 5.96 -5.19 -0.03 1.81 16 5 N -0.47 -7.66 2.79 -115.37 -0.32 -7.98 16 6 C 0.22 4.29 6.58 -154.01 -1.01 3.28 16 7 C 0.00 -0.02 2.70 -91.77 -0.25 -0.27 16 8 H 0.07 1.28 5.99 -51.93 -0.31 0.97 16 9 C -0.13 -2.36 8.99 37.16 0.33 -2.03 16 10 C 0.04 1.03 4.43 -27.88 -0.12 0.91 16 11 C -0.52 -13.83 8.41 -34.44 -0.29 -14.12 16 12 H 0.06 1.47 7.06 -52.49 -0.37 1.10 16 13 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 14 N -0.89 -26.45 13.29 55.43 0.74 -25.72 16 15 Si 0.89 21.01 29.54 -169.99 -5.02 15.99 16 16 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 17 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 18 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 19 N -0.28 -6.22 12.18 32.99 0.40 -5.82 16 20 N -0.32 -6.35 10.70 30.31 0.32 -6.02 16 21 C 0.33 5.25 7.04 -318.88 -2.25 3.01 16 22 N -0.43 -5.14 5.33 -170.63 -0.91 -6.05 16 23 C 0.03 0.31 5.92 -1.66 -0.01 0.30 16 24 C -0.09 -0.66 6.46 -25.28 -0.16 -0.83 16 25 C -0.14 -1.14 1.17 -154.34 -0.18 -1.32 16 26 C 0.05 0.40 8.42 37.08 0.31 0.72 16 27 O -0.38 -3.76 12.46 -35.23 -0.44 -4.19 16 28 C 0.05 0.40 8.35 37.09 0.31 0.71 16 29 C 0.06 0.61 6.03 -3.12 -0.02 0.59 16 30 H 0.10 1.36 7.83 -52.49 -0.41 0.95 16 31 H 0.11 1.64 7.04 -52.49 -0.37 1.27 16 32 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.06 0.65 7.78 -51.93 -0.40 0.24 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.10 1.14 7.08 -51.93 -0.37 0.77 16 36 H 0.09 0.91 5.38 -51.93 -0.28 0.63 16 37 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.07 1.41 6.95 -51.93 -0.36 1.05 16 39 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 40 H 0.01 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 43 H 0.06 0.57 7.99 -51.93 -0.41 0.15 16 44 H 0.09 0.70 6.04 -51.93 -0.31 0.39 16 45 H 0.08 0.52 7.87 -51.93 -0.41 0.11 16 46 H 0.09 0.55 8.05 -51.93 -0.42 0.13 16 47 H 0.09 0.58 8.10 -51.93 -0.42 0.16 16 48 H 0.09 0.58 8.04 -51.93 -0.42 0.17 16 49 H 0.09 0.66 7.99 -51.93 -0.42 0.25 16 50 H 0.09 0.68 8.12 -51.92 -0.42 0.26 16 51 H 0.09 0.99 7.91 -51.93 -0.41 0.58 16 52 H 0.09 1.08 6.65 -51.93 -0.35 0.74 16 LS Contribution 412.20 15.07 6.21 6.21 Total: -1.00 -33.21 412.20 -10.82 -44.02 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -8.53 Total: 0.40 kcal Atomic # 6 Polarization: -7.57 SS G_CDS: -3.27 Total: -10.84 kcal Atomic # 7 Polarization: -51.82 SS G_CDS: 0.23 Total: -51.59 kcal Atomic # 8 Polarization: -3.76 SS G_CDS: -0.44 Total: -4.19 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -33.21 -10.82 -44.02 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343751947.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.430 kcal (2) G-P(sol) polarization free energy of solvation -33.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.023 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds