Wall clock time and date at job start Wed Apr 1 2020 04:46:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50707 * 120.00065 * 2 1 4 4 C 1.50699 * 120.00464 * 180.02562 * 2 1 3 5 5 N 1.46501 * 109.47108 * 94.99606 * 4 2 1 6 6 C 1.36739 * 127.13561 * 270.18031 * 5 4 2 7 7 C 1.50697 * 126.34988 * 359.96274 * 6 5 4 8 8 H 1.09002 * 109.47293 * 0.29097 * 7 6 5 9 9 C 1.52996 * 109.47254 * 240.28827 * 7 6 5 10 10 C 1.53004 * 109.46978 * 120.29063 * 7 6 5 11 11 C 1.50701 * 109.47088 * 185.00193 * 10 7 6 12 12 H 1.08001 * 120.00161 * 359.97438 * 11 10 7 13 13 C 1.37875 * 119.99734 * 179.97438 * 11 10 7 14 14 N 1.31509 * 120.00420 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 119.99563 * 179.97438 * 13 11 10 16 16 H 1.48492 * 109.47542 * 0.02562 * 15 13 11 17 17 H 1.48499 * 109.47193 * 120.00567 * 15 13 11 18 18 H 1.48509 * 109.47094 * 240.00035 * 15 13 11 19 19 N 1.30297 * 107.30115 * 180.22975 * 6 5 4 20 20 N 1.28529 * 110.05464 * 359.77375 * 19 6 5 21 21 C 1.31209 * 109.86087 * 359.97438 * 20 19 6 22 22 N 1.38583 * 126.47530 * 179.97438 * 21 20 19 23 23 C 1.48709 * 111.04452 * 242.57088 * 22 21 20 24 24 C 1.55187 * 103.41594 * 159.08648 * 23 22 21 25 25 C 1.53557 * 102.61031 * 323.52799 * 24 23 22 26 26 C 1.52897 * 115.62188 * 151.59643 * 25 24 23 27 27 O 1.44402 * 85.14971 * 95.02754 * 26 25 24 28 28 C 1.44404 * 93.54135 * 23.37752 * 27 26 25 29 29 C 1.48213 * 110.99776 * 0.02612 * 22 21 20 30 30 H 1.08000 * 119.99736 * 359.97438 * 1 2 3 31 31 H 1.07996 * 120.00043 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47241 * 240.00173 * 3 2 1 33 33 H 1.09007 * 109.46903 * 0.02562 * 3 2 1 34 34 H 1.09002 * 109.46682 * 119.99673 * 3 2 1 35 35 H 1.09003 * 109.46451 * 335.00330 * 4 2 1 36 36 H 1.08992 * 109.47296 * 214.99839 * 4 2 1 37 37 H 1.08996 * 109.47278 * 60.00149 * 9 7 6 38 38 H 1.09000 * 109.47459 * 180.02562 * 9 7 6 39 39 H 1.08998 * 109.47264 * 299.99826 * 9 7 6 40 40 H 1.08999 * 109.46845 * 305.00015 * 10 7 6 41 41 H 1.08993 * 109.47486 * 64.99836 * 10 7 6 42 42 H 0.97004 * 120.00251 * 179.97438 * 14 13 11 43 43 H 1.09001 * 110.59922 * 40.61429 * 23 22 21 44 44 H 1.08994 * 110.78235 * 277.65008 * 23 22 21 45 45 H 1.09002 * 110.77924 * 205.24515 * 24 23 22 46 46 H 1.09007 * 110.94288 * 81.88168 * 24 23 22 47 47 H 1.09004 * 113.92098 * 209.07895 * 26 25 24 48 48 H 1.08993 * 113.92774 * 340.97350 * 26 25 24 49 49 H 1.08994 * 113.92761 * 222.57117 * 28 27 26 50 50 H 1.09008 * 113.92468 * 90.66867 * 28 27 26 51 51 H 1.09002 * 110.03338 * 95.04202 * 29 22 21 52 52 H 1.08995 * 110.03184 * 333.65985 * 29 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 2.0636 -1.3050 -0.0006 5 7 2.4120 -1.6672 -1.3767 6 6 1.6663 -2.4114 -2.2485 7 6 0.3164 -3.0221 -1.9735 8 1 0.0069 -2.7770 -0.9575 9 6 0.4031 -4.5417 -2.1277 10 6 -0.7066 -2.4663 -2.9663 11 6 -2.0786 -2.9815 -2.6153 12 1 -2.2080 -3.6399 -1.7690 13 6 -3.1686 -2.6124 -3.3745 14 7 -3.0112 -1.8103 -4.4047 15 14 -4.8691 -3.2517 -2.9398 16 1 -4.7776 -4.1300 -1.7459 17 1 -5.7676 -2.1070 -2.6439 18 1 -5.4143 -4.0259 -4.0838 19 7 2.3420 -2.4994 -3.3591 20 7 3.4531 -1.8624 -3.2507 21 6 3.5463 -1.3290 -2.0556 22 7 4.6007 -0.5709 -1.5718 23 6 5.2498 -1.2377 -0.4118 24 6 6.6564 -0.5841 -0.3615 25 6 6.9942 -0.4007 -1.8482 26 6 7.9297 0.7637 -2.1750 27 8 8.9803 -0.2255 -2.1211 28 6 8.0835 -1.3232 -2.3968 29 6 5.6605 -0.4198 -2.5968 30 1 -0.5400 0.9353 0.0004 31 1 -0.5400 -0.9353 -0.0004 32 1 2.6902 1.3629 -0.8900 33 1 1.3552 2.1337 0.0005 34 1 2.6902 1.3628 0.8901 35 1 1.4386 -2.0856 0.4334 36 1 2.9743 -1.1990 0.5888 37 1 1.1318 -4.9377 -1.4204 38 1 -0.5734 -4.9835 -1.9292 39 1 0.7125 -4.7868 -3.1437 40 1 -0.7043 -1.3773 -2.9189 41 1 -0.4453 -2.7865 -3.9748 42 1 -3.7781 -1.5510 -4.9391 43 1 5.3309 -2.3112 -0.5827 44 1 4.6997 -1.0368 0.5074 45 1 7.3745 -1.2483 0.1193 46 1 6.6206 0.3786 0.1485 47 1 7.7747 1.1905 -3.1660 48 1 7.9903 1.5161 -1.3887 49 1 8.2645 -2.2064 -1.7844 50 1 7.9767 -1.5511 -3.4574 51 1 5.5239 0.5152 -3.1402 52 1 5.6329 -1.2611 -3.2892 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001343751947.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:50 Heat of formation + Delta-G solvation = 75.667547 kcal Electronic energy + Delta-G solvation = -31916.126424 eV Core-core repulsion = 27918.279497 eV Total energy + Delta-G solvation = -3997.846927 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -44.05846 -42.04537 -38.93497 -37.92162 -36.88215 -34.50529 -34.27615 -32.86724 -30.65985 -29.64560 -28.73915 -28.45355 -27.86831 -27.62631 -25.91630 -25.79483 -23.68779 -23.57491 -22.00215 -20.76483 -20.03019 -19.63608 -18.64502 -18.20930 -17.54538 -17.25927 -17.08805 -16.76214 -16.53570 -16.38544 -16.16383 -15.59675 -15.43968 -15.09307 -14.95529 -14.73151 -14.28420 -14.13718 -13.98576 -13.71875 -13.59678 -13.32990 -13.09227 -12.92426 -12.87516 -12.86072 -12.77910 -12.61132 -12.50766 -12.47761 -12.26054 -12.24323 -11.94677 -11.61205 -11.54547 -11.47610 -11.45584 -11.15540 -11.03188 -10.67904 -10.60396 -10.54858 -10.18922 -9.30671 -8.15394 -6.26867 0.68616 0.92930 1.42869 1.44010 1.55946 1.58362 1.84573 2.43497 2.61379 2.73398 3.12120 3.18958 3.31929 3.44150 3.51924 3.55118 3.67819 3.89505 3.97359 4.08186 4.15612 4.17495 4.33800 4.38942 4.42277 4.44253 4.44853 4.56591 4.59482 4.63735 4.66024 4.74215 4.79948 4.84826 4.87371 4.94663 4.95693 5.02520 5.03322 5.08625 5.09873 5.12681 5.15402 5.16841 5.35094 5.44822 5.47926 5.52696 5.57707 5.70891 5.78028 5.84832 6.16490 6.22079 6.89170 7.42345 7.79871 8.97203 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.018740 B = 0.002739 C = 0.002584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.791979 B =10221.780069 C =10832.623713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.164 4.164 3 C -0.105 4.105 4 C 0.139 3.861 5 N -0.469 5.469 6 C 0.203 3.797 7 C 0.011 3.989 8 H 0.091 0.909 9 C -0.119 4.119 10 C 0.057 3.943 11 C -0.523 4.523 12 H 0.076 0.924 13 C -0.001 4.001 14 N -0.937 5.937 15 Si 0.963 3.037 16 H -0.252 1.252 17 H -0.282 1.282 18 H -0.285 1.285 19 N -0.328 5.328 20 N -0.363 5.363 21 C 0.349 3.651 22 N -0.424 5.424 23 C 0.032 3.968 24 C -0.084 4.084 25 C -0.132 4.132 26 C 0.055 3.945 27 O -0.401 6.401 28 C 0.046 3.954 29 C 0.055 3.945 30 H 0.107 0.893 31 H 0.095 0.905 32 H 0.055 0.945 33 H 0.060 0.940 34 H 0.091 0.909 35 H 0.110 0.890 36 H 0.129 0.871 37 H 0.063 0.937 38 H 0.074 0.926 39 H 0.039 0.961 40 H -0.022 1.022 41 H -0.015 1.015 42 H 0.261 0.739 43 H 0.048 0.952 44 H 0.112 0.888 45 H 0.101 0.899 46 H 0.105 0.895 47 H 0.089 0.911 48 H 0.113 0.887 49 H 0.103 0.897 50 H 0.083 0.917 51 H 0.091 0.909 52 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.325 4.441 16.043 26.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.165 4.165 3 C -0.162 4.162 4 C 0.018 3.982 5 N -0.163 5.163 6 C -0.066 4.066 7 C -0.010 4.010 8 H 0.109 0.891 9 C -0.177 4.177 10 C 0.018 3.982 11 C -0.561 4.561 12 H 0.094 0.906 13 C -0.198 4.198 14 N -0.577 5.577 15 Si 0.788 3.212 16 H -0.175 1.175 17 H -0.208 1.208 18 H -0.211 1.211 19 N -0.165 5.165 20 N -0.207 5.207 21 C -0.009 4.009 22 N -0.148 5.148 23 C -0.094 4.094 24 C -0.122 4.122 25 C -0.133 4.133 26 C -0.022 4.022 27 O -0.320 6.320 28 C -0.031 4.031 29 C -0.072 4.072 30 H 0.125 0.875 31 H 0.114 0.886 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.110 0.890 35 H 0.128 0.872 36 H 0.147 0.853 37 H 0.082 0.918 38 H 0.093 0.907 39 H 0.058 0.942 40 H -0.004 1.004 41 H 0.003 0.997 42 H 0.069 0.931 43 H 0.067 0.933 44 H 0.130 0.870 45 H 0.119 0.881 46 H 0.123 0.877 47 H 0.107 0.893 48 H 0.131 0.869 49 H 0.121 0.879 50 H 0.102 0.898 51 H 0.109 0.891 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 20.706 4.657 14.712 25.824 hybrid contribution -1.637 -0.328 0.048 1.670 sum 19.069 4.329 14.760 24.499 Atomic orbital electron populations 1.24080 0.95649 1.02848 0.97239 1.21928 0.95317 0.96086 1.03166 1.20764 0.99937 0.92690 1.02774 1.21238 1.02828 0.95927 0.78163 1.46388 1.14643 1.40838 1.14422 1.25267 0.97658 0.97086 0.86629 1.19723 0.84366 0.95974 1.00962 0.89078 1.21605 1.02360 0.92632 1.01142 1.18775 0.92830 0.93593 0.92961 1.21568 0.92128 1.28905 1.13499 0.90582 1.25975 1.03708 0.95303 0.94832 1.70162 1.31772 1.36504 1.19262 0.85426 0.78968 0.78223 0.78605 1.17544 1.20813 1.21125 1.73896 1.01733 1.19858 1.21038 1.74362 1.14739 1.14719 1.16871 1.22960 0.90382 0.97468 0.90079 1.61814 1.05402 1.39014 1.08617 1.23674 0.95867 0.96911 0.92966 1.22260 0.93900 1.03296 0.92715 1.23849 0.93547 0.97809 0.98093 1.24090 0.82802 0.92225 1.03048 1.89719 1.31290 1.18859 1.92167 1.24086 0.85779 0.91962 1.01230 1.22839 0.87680 1.03451 0.93240 0.87497 0.88650 0.92636 0.92051 0.89045 0.87191 0.85318 0.91831 0.90726 0.94189 1.00367 0.99664 0.93067 0.93299 0.87033 0.88083 0.87669 0.89269 0.86920 0.87874 0.89844 0.89100 0.91899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.41 13.90 67.78 0.94 -3.46 16 2 C -0.16 -3.95 5.64 -16.49 -0.09 -4.05 16 3 C -0.11 -2.11 10.12 71.24 0.72 -1.39 16 4 C 0.14 3.10 5.96 85.63 0.51 3.61 16 5 N -0.47 -14.77 2.79 -518.92 -1.45 -16.22 16 6 C 0.20 8.16 6.58 137.64 0.91 9.06 16 7 C 0.01 0.43 2.70 -11.54 -0.03 0.40 16 8 H 0.09 3.29 5.99 -2.39 -0.01 3.28 16 9 C -0.12 -4.43 8.99 71.98 0.65 -3.78 16 10 C 0.06 3.02 4.43 29.85 0.13 3.15 16 11 C -0.52 -28.31 8.41 25.60 0.22 -28.10 16 12 H 0.08 3.77 7.06 -2.91 -0.02 3.75 16 13 C 0.00 -0.04 5.46 84.65 0.46 0.42 16 14 N -0.94 -57.90 13.29 21.45 0.28 -57.62 16 15 Si 0.96 43.32 29.54 68.60 2.03 45.34 16 16 H -0.25 -10.42 7.11 99.48 0.71 -9.71 16 17 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 18 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 19 N -0.33 -15.01 12.18 -49.54 -0.60 -15.62 16 20 N -0.36 -14.72 10.70 -58.01 -0.62 -15.34 16 21 C 0.35 11.09 7.04 260.11 1.83 12.92 16 22 N -0.42 -9.45 5.33 -693.74 -3.70 -13.15 16 23 C 0.03 0.47 5.92 86.70 0.51 0.98 16 24 C -0.08 -0.86 6.46 31.53 0.20 -0.66 16 25 C -0.13 -1.85 1.17 -52.07 -0.06 -1.91 16 26 C 0.05 0.70 8.42 71.93 0.61 1.31 16 27 O -0.40 -7.09 12.46 -148.98 -1.86 -8.95 16 28 C 0.05 0.69 8.35 71.94 0.60 1.29 16 29 C 0.05 1.14 6.03 86.04 0.52 1.66 16 30 H 0.11 2.80 7.83 -2.91 -0.02 2.78 16 31 H 0.10 2.87 7.04 -2.91 -0.02 2.85 16 32 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.06 1.22 7.78 -2.38 -0.02 1.20 16 34 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.11 2.24 7.08 -2.39 -0.02 2.22 16 36 H 0.13 1.95 5.38 -2.39 -0.01 1.94 16 37 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 38 H 0.07 2.74 6.95 -2.39 -0.02 2.73 16 39 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 40 H -0.02 -1.32 8.14 -2.39 -0.02 -1.34 16 41 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 42 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 43 H 0.05 0.84 7.99 -2.39 -0.02 0.82 16 44 H 0.11 1.19 6.04 -2.39 -0.01 1.17 16 45 H 0.10 0.80 7.87 -2.39 -0.02 0.78 16 46 H 0.10 0.78 8.05 -2.38 -0.02 0.77 16 47 H 0.09 1.07 8.10 -2.38 -0.02 1.05 16 48 H 0.11 1.02 8.04 -2.39 -0.02 1.00 16 49 H 0.10 1.28 7.99 -2.39 -0.02 1.26 16 50 H 0.08 1.28 8.12 -2.38 -0.02 1.26 16 51 H 0.09 1.90 7.91 -2.39 -0.02 1.88 16 52 H 0.06 1.63 6.65 -2.39 -0.02 1.62 16 Total: -1.00 -76.75 412.20 3.61 -73.13 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: 0.91 Total: 16.95 kcal Atomic # 6 Polarization: -17.16 SS G_CDS: 8.62 Total: -8.54 kcal Atomic # 7 Polarization: -111.85 SS G_CDS: -6.09 Total: -117.94 kcal Atomic # 8 Polarization: -7.09 SS G_CDS: -1.86 Total: -8.95 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.34 kcal Total: -76.75 3.61 -73.13 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343751947.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.800 kcal (2) G-P(sol) polarization free energy of solvation -76.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.132 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds