Wall clock time and date at job start Wed Apr 1 2020 04:48:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46906 * 109.46968 * 202.28368 * 3 2 1 5 5 C 1.46897 * 110.99892 * 66.04590 * 4 3 2 6 6 C 1.38584 * 110.99663 * 190.00520 * 4 3 2 7 7 N 1.31217 * 126.47444 * 342.25759 * 6 4 3 8 8 N 1.28526 * 109.86244 * 180.02562 * 7 6 4 9 9 C 1.30301 * 110.04989 * 0.02562 * 8 7 6 10 10 C 1.50704 * 126.34347 * 180.02562 * 9 8 7 11 11 H 1.09001 * 109.46516 * 179.97438 * 10 9 8 12 12 C 1.52996 * 109.47457 * 299.96057 * 10 9 8 13 13 C 1.53001 * 109.46651 * 59.96371 * 10 9 8 14 14 C 1.50705 * 109.46833 * 174.99595 * 13 10 9 15 15 H 1.08000 * 119.99792 * 0.02562 * 14 13 10 16 16 C 1.37873 * 120.00049 * 179.97438 * 14 13 10 17 17 N 1.31517 * 119.99979 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 119.99968 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.47400 * 90.00004 * 18 16 14 20 20 H 1.48505 * 109.47201 * 210.00183 * 18 16 14 21 21 H 1.48498 * 109.47142 * 329.99730 * 18 16 14 22 22 N 1.36451 * 126.47092 * 162.31094 * 6 4 3 23 23 C 1.46497 * 127.13724 * 359.69891 * 22 6 4 24 24 C 1.53004 * 109.47084 * 275.09856 * 23 22 6 25 25 H 1.08999 * 109.48372 * 54.73974 * 24 23 22 26 26 C 1.53089 * 109.48156 * 174.76735 * 24 23 22 27 27 C 1.53182 * 109.16310 * 177.59061 * 26 24 23 28 28 C 1.53182 * 109.03303 * 303.01913 * 27 26 24 29 29 C 1.53084 * 109.16769 * 56.97988 * 28 27 26 30 30 O 1.42906 * 109.42588 * 302.39865 * 29 28 27 31 31 H 4.40886 * 5.52210 * 180.02562 * 4 1 2 32 32 H 1.08999 * 109.47040 * 82.28307 * 3 2 1 33 33 H 1.08995 * 109.47227 * 322.28061 * 3 2 1 34 34 H 1.09004 * 109.46660 * 185.25799 * 5 4 3 35 35 H 1.08999 * 109.46982 * 305.26266 * 5 4 3 36 36 H 1.08996 * 109.47215 * 65.26749 * 5 4 3 37 37 H 1.09000 * 109.47251 * 179.97438 * 12 10 9 38 38 H 1.09001 * 109.47233 * 300.00302 * 12 10 9 39 39 H 1.09001 * 109.46781 * 60.00134 * 12 10 9 40 40 H 1.08996 * 109.47170 * 294.99271 * 13 10 9 41 41 H 1.08999 * 109.47366 * 55.00074 * 13 10 9 42 42 H 0.96999 * 119.99635 * 179.97438 * 17 16 14 43 43 H 1.09002 * 109.47219 * 35.09404 * 23 22 6 44 44 H 1.08997 * 109.47319 * 155.09427 * 23 22 6 45 45 H 1.08996 * 109.52368 * 297.49110 * 26 24 23 46 46 H 1.09001 * 109.52208 * 57.62047 * 26 24 23 47 47 H 1.09001 * 109.54279 * 62.88018 * 27 26 24 48 48 H 1.08996 * 109.54533 * 183.15610 * 27 26 24 49 49 H 1.09003 * 109.52280 * 176.88896 * 28 27 26 50 50 H 1.09008 * 109.52054 * 297.00638 * 28 27 26 51 51 H 1.09001 * 109.48100 * 62.37149 * 29 28 27 52 52 H 1.08995 * 109.48334 * 182.39609 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1351 1.2825 0.5252 5 6 2.7856 1.4381 1.9435 6 6 4.5019 1.4086 0.3337 7 7 5.3459 0.4381 0.0737 8 7 6.5346 0.9128 -0.0430 9 6 6.5197 2.2035 0.1348 10 6 7.7095 3.1267 0.0783 11 1 7.3846 4.1499 0.2666 12 6 8.7281 2.7115 1.1417 13 6 8.3548 3.0427 -1.3064 14 6 9.4678 4.0541 -1.4041 15 1 9.6926 4.6925 -0.5625 16 6 10.1996 4.1636 -2.5674 17 7 11.1713 5.0458 -2.6525 18 14 9.8111 3.0588 -4.0228 19 1 8.8014 3.7183 -4.8893 20 1 11.0504 2.8151 -4.8040 21 1 9.2729 1.7647 -3.5321 22 7 5.2242 2.5653 0.3809 23 6 4.7162 3.9154 0.6360 24 6 4.2119 4.5264 -0.6730 25 1 3.4776 3.8603 -1.1259 26 6 3.5627 5.8829 -0.3865 27 6 3.1147 6.5150 -1.7080 28 6 4.3245 6.6347 -2.6400 29 6 4.9443 5.2492 -2.8394 30 8 5.3103 4.7050 -1.5697 31 1 -1.0501 -0.0004 0.0000 32 1 3.0094 -0.1372 -1.0184 33 1 3.0098 -0.8120 0.6287 34 1 3.0764 2.4324 2.2823 35 1 1.7102 1.3115 2.0686 36 1 3.3109 0.6858 2.5318 37 1 9.5889 3.3789 1.1005 38 1 8.2684 2.7712 2.1282 39 1 9.0530 1.6881 0.9536 40 1 8.7588 2.0419 -1.4589 41 1 7.6055 3.2523 -2.0698 42 1 11.6864 5.1226 -3.4708 43 1 3.8968 3.8659 1.3531 44 1 5.5167 4.5343 1.0412 45 1 2.6979 5.7432 0.2619 46 1 4.2845 6.5357 0.1044 47 1 2.3561 5.8863 -2.1742 48 1 2.7023 7.5057 -1.5170 49 1 4.0045 7.0326 -3.6030 50 1 5.0615 7.3041 -2.1961 51 1 4.2196 4.5926 -3.3208 52 1 5.8309 5.3346 -3.4676 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001344289361.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:48:51 Heat of formation + Delta-G solvation = 88.543455 kcal Electronic energy + Delta-G solvation = -32452.947033 eV Core-core repulsion = 28455.658448 eV Total energy + Delta-G solvation = -3997.288586 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.72384 -39.39601 -38.04838 -35.42734 -34.89839 -33.64821 -33.16086 -32.10477 -31.45103 -29.09305 -28.14409 -27.50014 -27.30672 -25.14475 -24.26225 -23.87604 -22.70831 -21.69257 -20.55968 -20.33076 -19.13332 -18.24542 -17.19982 -16.81932 -16.49750 -16.27370 -16.08208 -15.86313 -15.11999 -14.94131 -14.57762 -14.38471 -14.16836 -13.81234 -13.62258 -13.49121 -13.25179 -13.07569 -12.87543 -12.69559 -12.61384 -12.47084 -12.07408 -11.91338 -11.47096 -11.32936 -11.20761 -11.11440 -11.02972 -10.96177 -10.90019 -10.74654 -10.53283 -10.38081 -10.27806 -9.99878 -9.95278 -9.80750 -9.62572 -9.38785 -9.28829 -9.05667 -8.44786 -8.14308 -5.96926 -3.93084 2.02429 2.08722 2.58831 2.72926 3.22906 3.37963 3.46152 3.56707 3.68468 3.72475 4.13749 4.48913 4.54714 4.63065 4.66837 4.71048 4.74607 4.91011 4.93564 4.99914 5.07488 5.09889 5.19125 5.25770 5.35808 5.38373 5.43102 5.46804 5.50971 5.56047 5.64907 5.66208 5.67156 5.74112 5.80344 5.91610 6.00777 6.06371 6.09244 6.17574 6.20376 6.31100 6.44660 6.72725 6.76036 6.85909 7.07188 7.28514 7.32119 7.35931 7.40321 7.55468 7.86352 8.59079 9.06635 9.13898 9.66735 11.16093 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009686 B = 0.004199 C = 0.003466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2890.169632 B = 6667.342694 C = 8075.887292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.179 4.179 3 C 0.180 3.820 4 N -0.454 5.454 5 C 0.025 3.975 6 C 0.323 3.677 7 N -0.319 5.319 8 N -0.291 5.291 9 C 0.232 3.768 10 C 0.012 3.988 11 H 0.081 0.919 12 C -0.130 4.130 13 C 0.006 3.994 14 C -0.508 4.508 15 H 0.074 0.926 16 C 0.070 3.930 17 N -0.905 5.905 18 Si 0.871 3.129 19 H -0.280 1.280 20 H -0.289 1.289 21 H -0.262 1.262 22 N -0.468 5.468 23 C 0.120 3.880 24 C 0.075 3.925 25 H 0.066 0.934 26 C -0.146 4.146 27 C -0.118 4.118 28 C -0.157 4.157 29 C 0.064 3.936 30 O -0.355 6.355 31 H 0.219 0.781 32 H 0.108 0.892 33 H 0.080 0.920 34 H 0.071 0.929 35 H 0.084 0.916 36 H 0.043 0.957 37 H 0.079 0.921 38 H 0.031 0.969 39 H 0.059 0.941 40 H 0.025 0.975 41 H 0.017 0.983 42 H 0.261 0.739 43 H 0.102 0.898 44 H 0.106 0.894 45 H 0.072 0.928 46 H 0.077 0.923 47 H 0.061 0.939 48 H 0.067 0.933 49 H 0.071 0.929 50 H 0.076 0.924 51 H 0.043 0.957 52 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.881 -0.353 7.590 24.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.179 4.179 3 C 0.054 3.946 4 N -0.178 5.178 5 C -0.123 4.123 6 C -0.033 4.033 7 N -0.163 5.163 8 N -0.129 5.129 9 C -0.036 4.036 10 C -0.009 4.009 11 H 0.099 0.901 12 C -0.188 4.188 13 C -0.032 4.032 14 C -0.546 4.546 15 H 0.092 0.908 16 C -0.130 4.130 17 N -0.545 5.545 18 Si 0.698 3.302 19 H -0.206 1.206 20 H -0.215 1.215 21 H -0.186 1.186 22 N -0.162 5.162 23 C -0.003 4.003 24 C 0.016 3.984 25 H 0.084 0.916 26 C -0.184 4.184 27 C -0.155 4.155 28 C -0.195 4.195 29 C -0.013 4.013 30 O -0.274 6.274 31 H 0.236 0.764 32 H 0.126 0.874 33 H 0.098 0.902 34 H 0.090 0.910 35 H 0.103 0.897 36 H 0.062 0.938 37 H 0.098 0.902 38 H 0.051 0.949 39 H 0.078 0.922 40 H 0.043 0.957 41 H 0.035 0.965 42 H 0.071 0.929 43 H 0.120 0.880 44 H 0.124 0.876 45 H 0.091 0.909 46 H 0.095 0.905 47 H 0.080 0.920 48 H 0.086 0.914 49 H 0.090 0.910 50 H 0.095 0.905 51 H 0.062 0.938 52 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -22.253 -1.366 7.013 23.372 hybrid contribution -0.983 0.423 -0.445 1.159 sum -23.236 -0.943 6.568 24.165 Atomic orbital electron populations 1.24875 0.95768 0.99372 1.01080 1.22729 0.93900 1.00944 1.00345 1.18831 0.84387 0.88630 1.02707 1.58532 1.05767 1.34878 1.18613 1.22567 1.02325 1.02099 0.85291 1.22157 0.90049 0.84100 1.07026 1.74526 0.96431 1.24196 1.21166 1.74017 1.12666 1.06427 1.19768 1.25605 0.85075 0.93891 0.98985 1.19722 0.87109 0.93882 1.00162 0.90112 1.21727 0.99048 1.02815 0.95177 1.19523 0.95687 0.98037 0.89943 1.21022 1.14288 1.18569 1.00683 0.90751 1.24898 0.94776 0.95022 0.98329 1.69905 1.21567 1.35406 1.27607 0.86904 0.77642 0.82518 0.83088 1.20567 1.21543 1.18619 1.46128 1.08056 1.07363 1.54631 1.21931 1.01228 0.80193 0.96991 1.22373 0.89864 0.95583 0.90556 0.91637 1.22124 1.01024 0.96828 0.98464 1.21536 0.97721 1.00924 0.95362 1.22207 0.98156 0.98869 1.00219 1.22559 1.00699 0.92535 0.85519 1.88160 1.30807 1.83655 1.24753 0.76448 0.87395 0.90243 0.91007 0.89713 0.93825 0.90214 0.94946 0.92227 0.95665 0.96462 0.92895 0.87958 0.87560 0.90936 0.90452 0.92028 0.91422 0.91049 0.90535 0.93831 0.88155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.62 19.25 29.55 0.57 -1.05 16 2 C -0.18 -1.85 12.36 -37.12 -0.46 -2.31 16 3 C 0.18 2.10 4.87 -6.61 -0.03 2.06 16 4 N -0.45 -5.58 4.75 -185.73 -0.88 -6.47 16 5 C 0.02 0.23 9.31 60.06 0.56 0.79 16 6 C 0.32 5.10 6.89 -318.87 -2.20 2.91 16 7 N -0.32 -6.06 11.44 30.31 0.35 -5.71 16 8 N -0.29 -6.16 12.18 32.99 0.40 -5.76 16 9 C 0.23 4.48 6.58 -154.01 -1.01 3.47 16 10 C 0.01 0.25 2.70 -91.77 -0.25 0.00 16 11 H 0.08 1.58 6.83 -51.93 -0.35 1.23 16 12 C -0.13 -2.46 8.99 37.16 0.33 -2.13 16 13 C 0.01 0.16 3.50 -27.88 -0.10 0.06 16 14 C -0.51 -14.07 8.96 -34.44 -0.31 -14.38 16 15 H 0.07 2.16 7.30 -52.49 -0.38 1.78 16 16 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 17 N -0.91 -27.63 13.96 55.43 0.77 -26.86 16 18 Si 0.87 22.35 27.47 -169.99 -4.67 17.68 16 19 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 20 H -0.29 -7.36 7.11 56.52 0.40 -6.95 16 21 H -0.26 -6.73 6.54 56.52 0.37 -6.36 16 22 N -0.47 -7.43 2.76 -114.08 -0.31 -7.75 16 23 C 0.12 1.46 5.64 -4.04 -0.02 1.43 16 24 C 0.08 0.94 2.89 -26.68 -0.08 0.87 16 25 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 26 C -0.15 -1.39 5.42 -26.59 -0.14 -1.53 16 27 C -0.12 -1.10 6.03 -26.54 -0.16 -1.26 16 28 C -0.16 -1.75 6.14 -26.59 -0.16 -1.91 16 29 C 0.06 0.90 6.84 37.20 0.25 1.16 16 30 O -0.36 -5.78 10.36 -35.23 -0.36 -6.14 16 31 H 0.22 1.03 7.80 -54.08 -0.42 0.61 16 32 H 0.11 1.38 8.01 -51.93 -0.42 0.96 16 33 H 0.08 0.90 8.12 -51.93 -0.42 0.48 16 34 H 0.07 0.60 6.26 -51.93 -0.33 0.28 16 35 H 0.08 0.67 7.13 -51.93 -0.37 0.30 16 36 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.08 1.59 6.95 -51.93 -0.36 1.23 16 38 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.03 0.66 7.20 -51.93 -0.37 0.28 16 41 H 0.02 0.44 7.57 -51.93 -0.39 0.04 16 42 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 43 H 0.10 0.93 6.21 -51.93 -0.32 0.61 16 44 H 0.11 1.27 7.02 -51.93 -0.36 0.91 16 45 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 47 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 48 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 49 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 50 H 0.08 0.92 8.14 -51.92 -0.42 0.49 16 51 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 52 H 0.10 1.56 8.14 -51.93 -0.42 1.14 16 LS Contribution 417.92 15.07 6.30 6.30 Total: -1.00 -34.06 417.92 -10.46 -44.52 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -8.75 Total: 0.07 kcal Atomic # 6 Polarization: -6.58 SS G_CDS: -3.30 Total: -9.89 kcal Atomic # 7 Polarization: -52.87 SS G_CDS: 0.32 Total: -52.54 kcal Atomic # 8 Polarization: -5.78 SS G_CDS: -0.36 Total: -6.14 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -4.67 Total: 17.68 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -34.06 -10.46 -44.52 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344289361.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.063 kcal (2) G-P(sol) polarization free energy of solvation -34.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.519 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds