Wall clock time and date at job start Wed Apr 1 2020 04:48:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46906 * 109.46968 * 202.28368 * 3 2 1 5 5 C 1.46897 * 110.99892 * 66.04590 * 4 3 2 6 6 C 1.38584 * 110.99663 * 190.00520 * 4 3 2 7 7 N 1.31217 * 126.47444 * 342.25759 * 6 4 3 8 8 N 1.28526 * 109.86244 * 180.02562 * 7 6 4 9 9 C 1.30301 * 110.04989 * 0.02562 * 8 7 6 10 10 C 1.50704 * 126.34347 * 180.02562 * 9 8 7 11 11 H 1.09001 * 109.46516 * 179.97438 * 10 9 8 12 12 C 1.52996 * 109.47457 * 299.96057 * 10 9 8 13 13 C 1.53001 * 109.46651 * 59.96371 * 10 9 8 14 14 C 1.50705 * 109.46833 * 174.99595 * 13 10 9 15 15 H 1.08000 * 119.99792 * 0.02562 * 14 13 10 16 16 C 1.37873 * 120.00049 * 179.97438 * 14 13 10 17 17 N 1.31517 * 119.99979 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 119.99968 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.47400 * 90.00004 * 18 16 14 20 20 H 1.48505 * 109.47201 * 210.00183 * 18 16 14 21 21 H 1.48498 * 109.47142 * 329.99730 * 18 16 14 22 22 N 1.36451 * 126.47092 * 162.31094 * 6 4 3 23 23 C 1.46497 * 127.13724 * 359.69891 * 22 6 4 24 24 C 1.53004 * 109.47084 * 275.09856 * 23 22 6 25 25 H 1.08999 * 109.48372 * 54.73974 * 24 23 22 26 26 C 1.53089 * 109.48156 * 174.76735 * 24 23 22 27 27 C 1.53182 * 109.16310 * 177.59061 * 26 24 23 28 28 C 1.53182 * 109.03303 * 303.01913 * 27 26 24 29 29 C 1.53084 * 109.16769 * 56.97988 * 28 27 26 30 30 O 1.42906 * 109.42588 * 302.39865 * 29 28 27 31 31 H 4.40886 * 5.52210 * 180.02562 * 4 1 2 32 32 H 1.08999 * 109.47040 * 82.28307 * 3 2 1 33 33 H 1.08995 * 109.47227 * 322.28061 * 3 2 1 34 34 H 1.09004 * 109.46660 * 185.25799 * 5 4 3 35 35 H 1.08999 * 109.46982 * 305.26266 * 5 4 3 36 36 H 1.08996 * 109.47215 * 65.26749 * 5 4 3 37 37 H 1.09000 * 109.47251 * 179.97438 * 12 10 9 38 38 H 1.09001 * 109.47233 * 300.00302 * 12 10 9 39 39 H 1.09001 * 109.46781 * 60.00134 * 12 10 9 40 40 H 1.08996 * 109.47170 * 294.99271 * 13 10 9 41 41 H 1.08999 * 109.47366 * 55.00074 * 13 10 9 42 42 H 0.96999 * 119.99635 * 179.97438 * 17 16 14 43 43 H 1.09002 * 109.47219 * 35.09404 * 23 22 6 44 44 H 1.08997 * 109.47319 * 155.09427 * 23 22 6 45 45 H 1.08996 * 109.52368 * 297.49110 * 26 24 23 46 46 H 1.09001 * 109.52208 * 57.62047 * 26 24 23 47 47 H 1.09001 * 109.54279 * 62.88018 * 27 26 24 48 48 H 1.08996 * 109.54533 * 183.15610 * 27 26 24 49 49 H 1.09003 * 109.52280 * 176.88896 * 28 27 26 50 50 H 1.09008 * 109.52054 * 297.00638 * 28 27 26 51 51 H 1.09001 * 109.48100 * 62.37149 * 29 28 27 52 52 H 1.08995 * 109.48334 * 182.39609 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1351 1.2825 0.5252 5 6 2.7856 1.4381 1.9435 6 6 4.5019 1.4086 0.3337 7 7 5.3459 0.4381 0.0737 8 7 6.5346 0.9128 -0.0430 9 6 6.5197 2.2035 0.1348 10 6 7.7095 3.1267 0.0783 11 1 7.3846 4.1499 0.2666 12 6 8.7281 2.7115 1.1417 13 6 8.3548 3.0427 -1.3064 14 6 9.4678 4.0541 -1.4041 15 1 9.6926 4.6925 -0.5625 16 6 10.1996 4.1636 -2.5674 17 7 11.1713 5.0458 -2.6525 18 14 9.8111 3.0588 -4.0228 19 1 8.8014 3.7183 -4.8893 20 1 11.0504 2.8151 -4.8040 21 1 9.2729 1.7647 -3.5321 22 7 5.2242 2.5653 0.3809 23 6 4.7162 3.9154 0.6360 24 6 4.2119 4.5264 -0.6730 25 1 3.4776 3.8603 -1.1259 26 6 3.5627 5.8829 -0.3865 27 6 3.1147 6.5150 -1.7080 28 6 4.3245 6.6347 -2.6400 29 6 4.9443 5.2492 -2.8394 30 8 5.3103 4.7050 -1.5697 31 1 -1.0501 -0.0004 0.0000 32 1 3.0094 -0.1372 -1.0184 33 1 3.0098 -0.8120 0.6287 34 1 3.0764 2.4324 2.2823 35 1 1.7102 1.3115 2.0686 36 1 3.3109 0.6858 2.5318 37 1 9.5889 3.3789 1.1005 38 1 8.2684 2.7712 2.1282 39 1 9.0530 1.6881 0.9536 40 1 8.7588 2.0419 -1.4589 41 1 7.6055 3.2523 -2.0698 42 1 11.6864 5.1226 -3.4708 43 1 3.8968 3.8659 1.3531 44 1 5.5167 4.5343 1.0412 45 1 2.6979 5.7432 0.2619 46 1 4.2845 6.5357 0.1044 47 1 2.3561 5.8863 -2.1742 48 1 2.7023 7.5057 -1.5170 49 1 4.0045 7.0326 -3.6030 50 1 5.0615 7.3041 -2.1961 51 1 4.2196 4.5926 -3.3208 52 1 5.8309 5.3346 -3.4676 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001344289361.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:48:50 Heat of formation + Delta-G solvation = 69.592935 kcal Electronic energy + Delta-G solvation = -32453.768790 eV Core-core repulsion = 28455.658448 eV Total energy + Delta-G solvation = -3998.110342 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -44.06646 -40.40497 -39.05891 -37.04413 -36.21704 -34.57328 -34.34480 -33.84030 -32.51946 -30.56475 -29.32995 -28.91665 -28.43167 -26.20542 -25.57286 -25.21050 -23.77826 -23.36667 -21.75061 -21.22230 -20.66122 -19.04880 -19.01259 -18.15951 -17.65306 -17.42701 -17.24495 -16.85138 -16.33393 -16.12354 -15.86409 -15.59019 -15.39593 -15.27946 -15.14332 -14.57031 -14.44747 -14.29318 -13.94009 -13.85750 -13.77411 -13.56746 -13.52113 -13.11128 -12.94688 -12.89602 -12.65116 -12.42769 -12.27709 -12.08853 -11.96814 -11.91380 -11.86737 -11.69900 -11.63703 -11.50089 -11.38161 -11.21759 -11.15117 -10.98913 -10.71707 -10.53965 -10.39255 -9.44359 -8.24915 -6.23890 0.72945 1.04719 1.29785 1.34046 1.47595 1.80330 1.82572 1.88219 2.37029 2.69615 2.75705 3.11272 3.36415 3.45719 3.60484 3.72392 3.80954 3.84170 3.89841 3.94717 4.03163 4.09625 4.16558 4.20354 4.28639 4.37784 4.40790 4.49288 4.54153 4.54235 4.55798 4.66439 4.74641 4.79269 4.84889 4.90425 4.96767 5.04475 5.04703 5.06169 5.11180 5.14499 5.16286 5.34828 5.36590 5.37931 5.42578 5.49880 5.62136 5.72345 6.12977 6.28319 6.32780 6.65015 6.80131 7.38774 7.74446 8.90898 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009686 B = 0.004199 C = 0.003466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2890.169632 B = 6667.342694 C = 8075.887292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.225 4.225 3 C 0.184 3.816 4 N -0.449 5.449 5 C 0.024 3.976 6 C 0.346 3.654 7 N -0.353 5.353 8 N -0.327 5.327 9 C 0.218 3.782 10 C 0.023 3.977 11 H 0.087 0.913 12 C -0.122 4.122 13 C 0.020 3.980 14 C -0.502 4.502 15 H 0.054 0.946 16 C 0.021 3.979 17 N -0.943 5.943 18 Si 0.925 3.075 19 H -0.270 1.270 20 H -0.281 1.281 21 H -0.266 1.266 22 N -0.463 5.463 23 C 0.112 3.888 24 C 0.074 3.926 25 H 0.057 0.943 26 C -0.139 4.139 27 C -0.114 4.114 28 C -0.151 4.151 29 C 0.059 3.941 30 O -0.393 6.393 31 H 0.255 0.745 32 H 0.086 0.914 33 H 0.076 0.924 34 H 0.088 0.912 35 H 0.106 0.894 36 H 0.038 0.962 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.047 0.953 40 H 0.006 0.994 41 H 0.005 0.995 42 H 0.264 0.736 43 H 0.142 0.858 44 H 0.109 0.891 45 H 0.103 0.897 46 H 0.076 0.924 47 H 0.067 0.933 48 H 0.089 0.911 49 H 0.085 0.915 50 H 0.064 0.936 51 H 0.047 0.953 52 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.960 0.145 8.799 28.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.226 4.226 3 C 0.059 3.941 4 N -0.174 5.174 5 C -0.122 4.122 6 C -0.011 4.011 7 N -0.198 5.198 8 N -0.165 5.165 9 C -0.051 4.051 10 C 0.002 3.998 11 H 0.106 0.894 12 C -0.180 4.180 13 C -0.019 4.019 14 C -0.541 4.541 15 H 0.072 0.928 16 C -0.177 4.177 17 N -0.585 5.585 18 Si 0.750 3.250 19 H -0.195 1.195 20 H -0.207 1.207 21 H -0.191 1.191 22 N -0.155 5.155 23 C -0.010 4.010 24 C 0.016 3.984 25 H 0.075 0.925 26 C -0.177 4.177 27 C -0.152 4.152 28 C -0.189 4.189 29 C -0.018 4.018 30 O -0.313 6.313 31 H 0.271 0.729 32 H 0.105 0.895 33 H 0.094 0.906 34 H 0.106 0.894 35 H 0.124 0.876 36 H 0.057 0.943 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.066 0.934 40 H 0.024 0.976 41 H 0.023 0.977 42 H 0.073 0.927 43 H 0.159 0.841 44 H 0.127 0.873 45 H 0.122 0.878 46 H 0.095 0.905 47 H 0.086 0.914 48 H 0.107 0.893 49 H 0.103 0.897 50 H 0.083 0.917 51 H 0.065 0.935 52 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -26.358 -0.858 8.234 27.627 hybrid contribution 0.135 0.261 -0.775 0.829 sum -26.222 -0.597 7.459 27.269 Atomic orbital electron populations 1.25724 0.96401 0.96720 0.98357 1.22577 0.93807 1.03386 1.02816 1.18650 0.85834 0.88222 1.01435 1.58759 1.02935 1.35182 1.20495 1.22698 1.03638 1.02873 0.83033 1.22503 0.91077 0.83462 1.04058 1.74440 0.96330 1.25520 1.23464 1.73914 1.14272 1.07580 1.20721 1.25110 0.86121 0.93337 1.00524 1.19423 0.87870 0.94740 0.97813 0.89438 1.21627 0.98394 1.01492 0.96486 1.19285 0.94403 0.95645 0.92561 1.21238 1.14690 1.18343 0.99780 0.92829 1.25591 0.94844 0.96310 1.00910 1.70008 1.22804 1.37112 1.28545 0.86042 0.77846 0.80629 0.80443 1.19500 1.20666 1.19105 1.46203 1.06849 1.08679 1.53797 1.22372 1.02575 0.78233 0.97808 1.22528 0.88818 0.97299 0.89761 0.92538 1.22110 1.01844 0.94633 0.99101 1.21550 0.96682 1.02260 0.94693 1.22150 0.98694 0.96439 1.01612 1.22570 0.99761 0.94578 0.84893 1.88097 1.33198 1.84201 1.25769 0.72884 0.89540 0.90587 0.89377 0.87553 0.94338 0.91689 0.91839 0.93427 0.97566 0.97687 0.92652 0.84086 0.87292 0.87827 0.90507 0.91435 0.89267 0.89658 0.91694 0.93477 0.90935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 19.25 74.32 1.43 -0.57 16 2 C -0.23 -4.15 12.36 31.13 0.38 -3.77 16 3 C 0.18 4.16 4.87 84.50 0.41 4.58 16 4 N -0.45 -10.26 4.75 -741.54 -3.53 -13.79 16 5 C 0.02 0.38 9.31 127.69 1.19 1.57 16 6 C 0.35 10.69 6.89 260.11 1.79 12.48 16 7 N -0.35 -13.63 11.44 -58.00 -0.66 -14.30 16 8 N -0.33 -14.17 12.18 -49.53 -0.60 -14.77 16 9 C 0.22 8.51 6.58 137.64 0.91 9.41 16 10 C 0.02 0.93 2.70 -11.54 -0.03 0.90 16 11 H 0.09 3.46 6.83 -2.39 -0.02 3.44 16 12 C -0.12 -4.70 8.99 71.98 0.65 -4.05 16 13 C 0.02 0.99 3.50 29.85 0.10 1.09 16 14 C -0.50 -28.80 8.96 25.60 0.23 -28.57 16 15 H 0.05 3.24 7.30 -2.91 -0.02 3.22 16 16 C 0.02 1.23 5.47 84.65 0.46 1.69 16 17 N -0.94 -58.98 13.96 21.45 0.30 -58.68 16 18 Si 0.92 47.28 27.47 68.60 1.88 49.16 16 19 H -0.27 -13.25 7.11 99.48 0.71 -12.55 16 20 H -0.28 -13.91 7.11 99.48 0.71 -13.21 16 21 H -0.27 -13.73 6.54 99.48 0.65 -13.08 16 22 N -0.46 -14.25 2.76 -514.85 -1.42 -15.67 16 23 C 0.11 2.46 5.64 86.38 0.49 2.95 16 24 C 0.07 1.73 2.89 30.63 0.09 1.82 16 25 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 26 C -0.14 -2.19 5.42 30.68 0.17 -2.02 16 27 C -0.11 -1.80 6.03 30.72 0.19 -1.62 16 28 C -0.15 -3.22 6.14 30.68 0.19 -3.03 16 29 C 0.06 1.69 6.84 72.01 0.49 2.18 16 30 O -0.39 -12.86 10.36 -148.98 -1.54 -14.40 16 31 H 0.25 1.06 7.80 -4.41 -0.03 1.03 16 32 H 0.09 2.27 8.01 -2.39 -0.02 2.25 16 33 H 0.08 1.72 8.12 -2.39 -0.02 1.70 16 34 H 0.09 1.11 6.26 -2.39 -0.01 1.09 16 35 H 0.11 1.28 7.13 -2.39 -0.02 1.26 16 36 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 37 H 0.06 2.66 6.95 -2.39 -0.02 2.64 16 38 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 39 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 40 H 0.01 0.33 7.20 -2.39 -0.02 0.31 16 41 H 0.00 0.25 7.57 -2.39 -0.02 0.24 16 42 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 43 H 0.14 1.97 6.21 -2.39 -0.01 1.95 16 44 H 0.11 2.39 7.02 -2.39 -0.02 2.37 16 45 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 46 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 47 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 48 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 49 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 50 H 0.06 1.52 8.14 -2.38 -0.02 1.50 16 51 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 52 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 Total: -1.00 -77.40 417.92 4.40 -73.00 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: 0.84 Total: 14.40 kcal Atomic # 6 Polarization: -14.09 SS G_CDS: 9.13 Total: -4.96 kcal Atomic # 7 Polarization: -111.29 SS G_CDS: -5.91 Total: -117.21 kcal Atomic # 8 Polarization: -12.86 SS G_CDS: -1.54 Total: -14.40 kcal Atomic # 14 Polarization: 47.28 SS G_CDS: 1.88 Total: 49.16 kcal Total: -77.40 4.40 -73.00 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344289361.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.596 kcal (2) G-P(sol) polarization free energy of solvation -77.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.004 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds