Wall clock time and date at job start Wed Apr 1 2020 04:48:50
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.17403 * 1
3 3 C 1.47203 * 179.97438 * 2 1
4 4 N 1.46906 * 109.46968 * 202.28368 * 3 2 1
5 5 C 1.46897 * 110.99892 * 66.04590 * 4 3 2
6 6 C 1.38584 * 110.99663 * 190.00520 * 4 3 2
7 7 N 1.31217 * 126.47444 * 342.25759 * 6 4 3
8 8 N 1.28526 * 109.86244 * 180.02562 * 7 6 4
9 9 C 1.30301 * 110.04989 * 0.02562 * 8 7 6
10 10 C 1.50704 * 126.34347 * 180.02562 * 9 8 7
11 11 H 1.09001 * 109.46516 * 179.97438 * 10 9 8
12 12 C 1.52996 * 109.47457 * 299.96057 * 10 9 8
13 13 C 1.53001 * 109.46651 * 59.96371 * 10 9 8
14 14 C 1.50705 * 109.46833 * 174.99595 * 13 10 9
15 15 H 1.08000 * 119.99792 * 0.02562 * 14 13 10
16 16 C 1.37873 * 120.00049 * 179.97438 * 14 13 10
17 17 N 1.31517 * 119.99979 * 180.02562 * 16 14 13
18 18 Si 1.86799 * 119.99968 * 0.02562 * 16 14 13
19 19 H 1.48500 * 109.47400 * 90.00004 * 18 16 14
20 20 H 1.48505 * 109.47201 * 210.00183 * 18 16 14
21 21 H 1.48498 * 109.47142 * 329.99730 * 18 16 14
22 22 N 1.36451 * 126.47092 * 162.31094 * 6 4 3
23 23 C 1.46497 * 127.13724 * 359.69891 * 22 6 4
24 24 C 1.53004 * 109.47084 * 275.09856 * 23 22 6
25 25 H 1.08999 * 109.48372 * 54.73974 * 24 23 22
26 26 C 1.53089 * 109.48156 * 174.76735 * 24 23 22
27 27 C 1.53182 * 109.16310 * 177.59061 * 26 24 23
28 28 C 1.53182 * 109.03303 * 303.01913 * 27 26 24
29 29 C 1.53084 * 109.16769 * 56.97988 * 28 27 26
30 30 O 1.42906 * 109.42588 * 302.39865 * 29 28 27
31 31 H 4.40886 * 5.52210 * 180.02562 * 4 1 2
32 32 H 1.08999 * 109.47040 * 82.28307 * 3 2 1
33 33 H 1.08995 * 109.47227 * 322.28061 * 3 2 1
34 34 H 1.09004 * 109.46660 * 185.25799 * 5 4 3
35 35 H 1.08999 * 109.46982 * 305.26266 * 5 4 3
36 36 H 1.08996 * 109.47215 * 65.26749 * 5 4 3
37 37 H 1.09000 * 109.47251 * 179.97438 * 12 10 9
38 38 H 1.09001 * 109.47233 * 300.00302 * 12 10 9
39 39 H 1.09001 * 109.46781 * 60.00134 * 12 10 9
40 40 H 1.08996 * 109.47170 * 294.99271 * 13 10 9
41 41 H 1.08999 * 109.47366 * 55.00074 * 13 10 9
42 42 H 0.96999 * 119.99635 * 179.97438 * 17 16 14
43 43 H 1.09002 * 109.47219 * 35.09404 * 23 22 6
44 44 H 1.08997 * 109.47319 * 155.09427 * 23 22 6
45 45 H 1.08996 * 109.52368 * 297.49110 * 26 24 23
46 46 H 1.09001 * 109.52208 * 57.62047 * 26 24 23
47 47 H 1.09001 * 109.54279 * 62.88018 * 27 26 24
48 48 H 1.08996 * 109.54533 * 183.15610 * 27 26 24
49 49 H 1.09003 * 109.52280 * 176.88896 * 28 27 26
50 50 H 1.09008 * 109.52054 * 297.00638 * 28 27 26
51 51 H 1.09001 * 109.48100 * 62.37149 * 29 28 27
52 52 H 1.08995 * 109.48334 * 182.39609 * 29 28 27
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.1740 0.0000 0.0000
3 6 2.6461 0.0007 0.0000
4 7 3.1351 1.2825 0.5252
5 6 2.7856 1.4381 1.9435
6 6 4.5019 1.4086 0.3337
7 7 5.3459 0.4381 0.0737
8 7 6.5346 0.9128 -0.0430
9 6 6.5197 2.2035 0.1348
10 6 7.7095 3.1267 0.0783
11 1 7.3846 4.1499 0.2666
12 6 8.7281 2.7115 1.1417
13 6 8.3548 3.0427 -1.3064
14 6 9.4678 4.0541 -1.4041
15 1 9.6926 4.6925 -0.5625
16 6 10.1996 4.1636 -2.5674
17 7 11.1713 5.0458 -2.6525
18 14 9.8111 3.0588 -4.0228
19 1 8.8014 3.7183 -4.8893
20 1 11.0504 2.8151 -4.8040
21 1 9.2729 1.7647 -3.5321
22 7 5.2242 2.5653 0.3809
23 6 4.7162 3.9154 0.6360
24 6 4.2119 4.5264 -0.6730
25 1 3.4776 3.8603 -1.1259
26 6 3.5627 5.8829 -0.3865
27 6 3.1147 6.5150 -1.7080
28 6 4.3245 6.6347 -2.6400
29 6 4.9443 5.2492 -2.8394
30 8 5.3103 4.7050 -1.5697
31 1 -1.0501 -0.0004 0.0000
32 1 3.0094 -0.1372 -1.0184
33 1 3.0098 -0.8120 0.6287
34 1 3.0764 2.4324 2.2823
35 1 1.7102 1.3115 2.0686
36 1 3.3109 0.6858 2.5318
37 1 9.5889 3.3789 1.1005
38 1 8.2684 2.7712 2.1282
39 1 9.0530 1.6881 0.9536
40 1 8.7588 2.0419 -1.4589
41 1 7.6055 3.2523 -2.0698
42 1 11.6864 5.1226 -3.4708
43 1 3.8968 3.8659 1.3531
44 1 5.5167 4.5343 1.0412
45 1 2.6979 5.7432 0.2619
46 1 4.2845 6.5357 0.1044
47 1 2.3561 5.8863 -2.1742
48 1 2.7023 7.5057 -1.5170
49 1 4.0045 7.0326 -3.6030
50 1 5.0615 7.3041 -2.1961
51 1 4.2196 4.5926 -3.3208
52 1 5.8309 5.3346 -3.4676
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001344289361.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:48:50
Heat of formation + Delta-G solvation = 69.592935 kcal
Electronic energy + Delta-G solvation = -32453.768790 eV
Core-core repulsion = 28455.658448 eV
Total energy + Delta-G solvation = -3998.110342 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 346.211 amu
Computer time = 1.22 seconds
Orbital eigenvalues (eV)
-44.06646 -40.40497 -39.05891 -37.04413 -36.21704 -34.57328 -34.34480 -33.84030
-32.51946 -30.56475 -29.32995 -28.91665 -28.43167 -26.20542 -25.57286 -25.21050
-23.77826 -23.36667 -21.75061 -21.22230 -20.66122 -19.04880 -19.01259 -18.15951
-17.65306 -17.42701 -17.24495 -16.85138 -16.33393 -16.12354 -15.86409 -15.59019
-15.39593 -15.27946 -15.14332 -14.57031 -14.44747 -14.29318 -13.94009 -13.85750
-13.77411 -13.56746 -13.52113 -13.11128 -12.94688 -12.89602 -12.65116 -12.42769
-12.27709 -12.08853 -11.96814 -11.91380 -11.86737 -11.69900 -11.63703 -11.50089
-11.38161 -11.21759 -11.15117 -10.98913 -10.71707 -10.53965 -10.39255 -9.44359
-8.24915 -6.23890 0.72945 1.04719 1.29785 1.34046 1.47595 1.80330
1.82572 1.88219 2.37029 2.69615 2.75705 3.11272 3.36415 3.45719
3.60484 3.72392 3.80954 3.84170 3.89841 3.94717 4.03163 4.09625
4.16558 4.20354 4.28639 4.37784 4.40790 4.49288 4.54153 4.54235
4.55798 4.66439 4.74641 4.79269 4.84889 4.90425 4.96767 5.04475
5.04703 5.06169 5.11180 5.14499 5.16286 5.34828 5.36590 5.37931
5.42578 5.49880 5.62136 5.72345 6.12977 6.28319 6.32780 6.65015
6.80131 7.38774 7.74446 8.90898
Molecular weight = 346.21amu
Principal moments of inertia in cm(-1)
A = 0.009686 B = 0.004199 C = 0.003466
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2890.169632 B = 6667.342694 C = 8075.887292
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.154 4.154
2 C -0.225 4.225
3 C 0.184 3.816
4 N -0.449 5.449
5 C 0.024 3.976
6 C 0.346 3.654
7 N -0.353 5.353
8 N -0.327 5.327
9 C 0.218 3.782
10 C 0.023 3.977
11 H 0.087 0.913
12 C -0.122 4.122
13 C 0.020 3.980
14 C -0.502 4.502
15 H 0.054 0.946
16 C 0.021 3.979
17 N -0.943 5.943
18 Si 0.925 3.075
19 H -0.270 1.270
20 H -0.281 1.281
21 H -0.266 1.266
22 N -0.463 5.463
23 C 0.112 3.888
24 C 0.074 3.926
25 H 0.057 0.943
26 C -0.139 4.139
27 C -0.114 4.114
28 C -0.151 4.151
29 C 0.059 3.941
30 O -0.393 6.393
31 H 0.255 0.745
32 H 0.086 0.914
33 H 0.076 0.924
34 H 0.088 0.912
35 H 0.106 0.894
36 H 0.038 0.962
37 H 0.064 0.936
38 H 0.063 0.937
39 H 0.047 0.953
40 H 0.006 0.994
41 H 0.005 0.995
42 H 0.264 0.736
43 H 0.142 0.858
44 H 0.109 0.891
45 H 0.103 0.897
46 H 0.076 0.924
47 H 0.067 0.933
48 H 0.089 0.911
49 H 0.085 0.915
50 H 0.064 0.936
51 H 0.047 0.953
52 H 0.072 0.928
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -26.960 0.145 8.799 28.360
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.172 4.172
2 C -0.226 4.226
3 C 0.059 3.941
4 N -0.174 5.174
5 C -0.122 4.122
6 C -0.011 4.011
7 N -0.198 5.198
8 N -0.165 5.165
9 C -0.051 4.051
10 C 0.002 3.998
11 H 0.106 0.894
12 C -0.180 4.180
13 C -0.019 4.019
14 C -0.541 4.541
15 H 0.072 0.928
16 C -0.177 4.177
17 N -0.585 5.585
18 Si 0.750 3.250
19 H -0.195 1.195
20 H -0.207 1.207
21 H -0.191 1.191
22 N -0.155 5.155
23 C -0.010 4.010
24 C 0.016 3.984
25 H 0.075 0.925
26 C -0.177 4.177
27 C -0.152 4.152
28 C -0.189 4.189
29 C -0.018 4.018
30 O -0.313 6.313
31 H 0.271 0.729
32 H 0.105 0.895
33 H 0.094 0.906
34 H 0.106 0.894
35 H 0.124 0.876
36 H 0.057 0.943
37 H 0.083 0.917
38 H 0.082 0.918
39 H 0.066 0.934
40 H 0.024 0.976
41 H 0.023 0.977
42 H 0.073 0.927
43 H 0.159 0.841
44 H 0.127 0.873
45 H 0.122 0.878
46 H 0.095 0.905
47 H 0.086 0.914
48 H 0.107 0.893
49 H 0.103 0.897
50 H 0.083 0.917
51 H 0.065 0.935
52 H 0.091 0.909
Dipole moment (debyes) X Y Z Total
from point charges -26.358 -0.858 8.234 27.627
hybrid contribution 0.135 0.261 -0.775 0.829
sum -26.222 -0.597 7.459 27.269
Atomic orbital electron populations
1.25724 0.96401 0.96720 0.98357 1.22577 0.93807 1.03386 1.02816
1.18650 0.85834 0.88222 1.01435 1.58759 1.02935 1.35182 1.20495
1.22698 1.03638 1.02873 0.83033 1.22503 0.91077 0.83462 1.04058
1.74440 0.96330 1.25520 1.23464 1.73914 1.14272 1.07580 1.20721
1.25110 0.86121 0.93337 1.00524 1.19423 0.87870 0.94740 0.97813
0.89438 1.21627 0.98394 1.01492 0.96486 1.19285 0.94403 0.95645
0.92561 1.21238 1.14690 1.18343 0.99780 0.92829 1.25591 0.94844
0.96310 1.00910 1.70008 1.22804 1.37112 1.28545 0.86042 0.77846
0.80629 0.80443 1.19500 1.20666 1.19105 1.46203 1.06849 1.08679
1.53797 1.22372 1.02575 0.78233 0.97808 1.22528 0.88818 0.97299
0.89761 0.92538 1.22110 1.01844 0.94633 0.99101 1.21550 0.96682
1.02260 0.94693 1.22150 0.98694 0.96439 1.01612 1.22570 0.99761
0.94578 0.84893 1.88097 1.33198 1.84201 1.25769 0.72884 0.89540
0.90587 0.89377 0.87553 0.94338 0.91689 0.91839 0.93427 0.97566
0.97687 0.92652 0.84086 0.87292 0.87827 0.90507 0.91435 0.89267
0.89658 0.91694 0.93477 0.90935
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.00 19.25 74.32 1.43 -0.57 16
2 C -0.23 -4.15 12.36 31.13 0.38 -3.77 16
3 C 0.18 4.16 4.87 84.50 0.41 4.58 16
4 N -0.45 -10.26 4.75 -741.54 -3.53 -13.79 16
5 C 0.02 0.38 9.31 127.69 1.19 1.57 16
6 C 0.35 10.69 6.89 260.11 1.79 12.48 16
7 N -0.35 -13.63 11.44 -58.00 -0.66 -14.30 16
8 N -0.33 -14.17 12.18 -49.53 -0.60 -14.77 16
9 C 0.22 8.51 6.58 137.64 0.91 9.41 16
10 C 0.02 0.93 2.70 -11.54 -0.03 0.90 16
11 H 0.09 3.46 6.83 -2.39 -0.02 3.44 16
12 C -0.12 -4.70 8.99 71.98 0.65 -4.05 16
13 C 0.02 0.99 3.50 29.85 0.10 1.09 16
14 C -0.50 -28.80 8.96 25.60 0.23 -28.57 16
15 H 0.05 3.24 7.30 -2.91 -0.02 3.22 16
16 C 0.02 1.23 5.47 84.65 0.46 1.69 16
17 N -0.94 -58.98 13.96 21.45 0.30 -58.68 16
18 Si 0.92 47.28 27.47 68.60 1.88 49.16 16
19 H -0.27 -13.25 7.11 99.48 0.71 -12.55 16
20 H -0.28 -13.91 7.11 99.48 0.71 -13.21 16
21 H -0.27 -13.73 6.54 99.48 0.65 -13.08 16
22 N -0.46 -14.25 2.76 -514.85 -1.42 -15.67 16
23 C 0.11 2.46 5.64 86.38 0.49 2.95 16
24 C 0.07 1.73 2.89 30.63 0.09 1.82 16
25 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16
26 C -0.14 -2.19 5.42 30.68 0.17 -2.02 16
27 C -0.11 -1.80 6.03 30.72 0.19 -1.62 16
28 C -0.15 -3.22 6.14 30.68 0.19 -3.03 16
29 C 0.06 1.69 6.84 72.01 0.49 2.18 16
30 O -0.39 -12.86 10.36 -148.98 -1.54 -14.40 16
31 H 0.25 1.06 7.80 -4.41 -0.03 1.03 16
32 H 0.09 2.27 8.01 -2.39 -0.02 2.25 16
33 H 0.08 1.72 8.12 -2.39 -0.02 1.70 16
34 H 0.09 1.11 6.26 -2.39 -0.01 1.09 16
35 H 0.11 1.28 7.13 -2.39 -0.02 1.26 16
36 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16
37 H 0.06 2.66 6.95 -2.39 -0.02 2.64 16
38 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16
39 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16
40 H 0.01 0.33 7.20 -2.39 -0.02 0.31 16
41 H 0.00 0.25 7.57 -2.39 -0.02 0.24 16
42 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16
43 H 0.14 1.97 6.21 -2.39 -0.01 1.95 16
44 H 0.11 2.39 7.02 -2.39 -0.02 2.37 16
45 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16
46 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16
47 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16
48 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16
49 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16
50 H 0.06 1.52 8.14 -2.38 -0.02 1.50 16
51 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16
52 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16
Total: -1.00 -77.40 417.92 4.40 -73.00
By element:
Atomic # 1 Polarization: 13.56 SS G_CDS: 0.84 Total: 14.40 kcal
Atomic # 6 Polarization: -14.09 SS G_CDS: 9.13 Total: -4.96 kcal
Atomic # 7 Polarization: -111.29 SS G_CDS: -5.91 Total: -117.21 kcal
Atomic # 8 Polarization: -12.86 SS G_CDS: -1.54 Total: -14.40 kcal
Atomic # 14 Polarization: 47.28 SS G_CDS: 1.88 Total: 49.16 kcal
Total: -77.40 4.40 -73.00 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001344289361.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 142.596 kcal
(2) G-P(sol) polarization free energy of solvation -77.401 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.196 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.397 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.004 kcal
(6) G-S(sol) free energy of system = (1) + (5) 69.593 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.22 seconds